RCSB PDB: Search

Warning You are using a web browser that we do not support. Our website will not work properly. Please update to a newer version or download a new web browser, such as Chrome or Firefox.

Help

Help

RCSB PDB

Deposit
- PDBx/mmCIF file
- pdb_extract
- SF-Tool
- Ligand Expo
- MAXIT
- Validation Server
- Validation API
- Information for Journals
- Validation Task Forces
- wwPDB OneDep System
- PDB-IHM
Search
Visualize
Analyze
Download
Learn
- Training Courses
- Guide to PDB Data
- Molecule of the Month
- Educational Resources
- Curricula
- Browse
- News
- SciArt Galleries
- Irving Geis
- David Goodsell
About
Careers
COVID-19

233,249 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

	Include CSM
Advanced Search \| Browse Annotations		Help

Search
Query History
Browse Annotations
MyPDB

QUERY: Citation Author = "Ferrer, J.-L."

MyPDB Login

Search API

Advanced Search Query Builder

Help

Full Text

Structure Attributes

Help

NOT

Count

Add Subquery

Chemical Attributes

Sequence Similarity

Sequence Motif

Structure Similarity

Structure Motif

Chemical Similarity

Return

grouped by

Include Computed Structure Models (CSM)

Count

Clear

Search Summary

This query matches 37 Structures.

Refinements

Structure Determination Methodology

experimental (37)

Scientific Name of Source Organism

	Synechocystis sp. PCC 6803 (10)
	Arabidopsis thaliana (9)
	Homo sapiens (4)
	Medicago sativa (4)
	Bacillus subtilis (2)
	Biomphalaria glabrata (1)
	Escherichia coli (1)
	Gerbera hybrid cultivar (1)
	HIV-1 M:B_HXB2R (1)
	Human immunodeficiency virus 1 (1)

More...

Taxonomy

	Eukaryota (20)
	Bacteria (15)
	Riboviria (2)
	Eukaryota (eukaryotes) (1)

Experimental Method

X-RAY DIFFRACTION (37)

Polymer Entity Type

Protein (37)

Refinement Resolution (Å)

	1.5 - 2.0 (8)
	2.0 - 2.5 (13)
	2.5 - 3.0 (14)
	3.0 - 3.5 (2)

Release Date

	2000 - 2004 (10)
	2005 - 2009 (25)
	2010 - 2014 (2)

Enzyme Classification Name

	Transferases (16)
	Hydrolases (16)
	Oxidoreductases (1)

Symmetry Type

	Cyclic (20)
	Asymmetric (17)
	Dihedral (1)

SCOP Classification

	Alpha and beta proteins (a/b) (21)
	All alpha proteins (5)
	Artifacts (5)
	Alpha and beta proteins (a+b) (4)
	All beta proteins (1)
	Multi-domain proteins (alpha and beta) (1)

AllSelected

1 to 25 of 37 Structures

Page 1 of 2

Sort by

Explore in 3D

1ND7 \| pdb_00001nd7	Download File View File

Conformational Flexibility Underlies Ubiquitin Ligation Mediated by the WWP1 HECT domain E3 Ligase

Verdecia, M.A., Joaziero, C.A.P., Wells, N.J., Ferrer, J.-L., Bowman, M.E., Hunter, T., Noel, J.P.

(2003) Mol Cell 11: 249-259

Released	2003-09-23
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens
Macromolecule	WW domain-containing protein 1 (protein)

Explore in 3D

1OSH \| pdb_00001osh	Download File View File

A Chemical, Genetic, and Structural Analysis of the nuclear bile acid receptor FXR

Downes, M., Verdecia, M.A., Roecker, A.J., Hughes, R., Hogenesch, J.B., Kast-Woelbern, H.R., Bowman, M.E., Ferrer, J.-L., Anisfeld, A.M., Edwards, P.A., Rosenfeld, J.M., Alvarez, J.G.A., Noel, J.P., Nicolaou, K.C., Evans, R.M.

(2003) Mol Cell 11: 1079-1092

Released	2003-09-23
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Homo sapiens
Macromolecule	Bile acid receptor (protein)
Unique Ligands	FEX

Explore in 3D

1QLV \| pdb_00001qlv	Download File View File

Pyrone synthase (PYS) from Gerbera hybrida

Ferrer, J.-L., Jez, J.M., Bowman, M.E., Schroder, J., Noel, J.P.

To be published

Released	2000-09-24
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Gerbera hybrid cultivar
Macromolecule	PYRONE SYNTHASE (protein)

Explore in 3D

1SUI \| pdb_00001sui	Download File View File

Alfalfa caffeoyl coenzyme A 3-O-methyltransferase

Ferrer, J.-L., Zubieta, C., Dixon, R.A., Noel, J.P.

(2005) Plant Physiol 137: 1009-1017

Released	2005-03-15
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Medicago sativa
Macromolecule	Caffeoyl-CoA O-methyltransferase (protein)
Unique Ligands	CA, FRE, SAH

Explore in 3D

1SUS \| pdb_00001sus	Download File View File

Crystal structure of alfalfa feruoyl coenzyme A 3-O-methyltransferase

Ferrer, J.-L., Zubieta, C., Dixon, R.A., Noel, J.P.

(2005) Plant Physiol 137: 1009-1017

Released	2005-03-15
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Medicago sativa
Macromolecule	Caffeoyl-CoA O-methyltransferase (protein)
Unique Ligands	CA, SAH, SPF

Explore in 3D

1TJ3 \| pdb_00001tj3	Download File View File

X-Ray structure of the Sucrose-Phosphatase (SPP) from Synechocystis sp. PCC6803 in a closed conformation

Fieulaine, S., Lunn, J.E., Borel, F., Ferrer, J.-L.

(2005) Plant Cell 17: 2049-2058

Released	2005-06-14
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Synechocystis sp. PCC 6803
Macromolecule	Sucrose-Phosphatase (protein)
Unique Ligands	MG

Explore in 3D

1TJ4 \| pdb_00001tj4	Download File View File

X-Ray structure of the Sucrose-Phosphatase (SPP) from Synechocystis sp. PCC6803 in complex with sucrose

Fieulaine, S., Lunn, J.E., Borel, F., Ferrer, J.-L.

(2005) Plant Cell 17: 2049-2058

Released	2005-06-14
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Synechocystis sp. PCC 6803
Macromolecule	Sucrose-Phosphatase (protein)
Unique Ligands	MG
Unique branched monosaccharides	FRU, GLC

Explore in 3D

1TJ5 \| pdb_00001tj5	Download File View File

X-Ray structure of the Sucrose-Phosphatase (SPP) from Synechocystis sp. PCC6803 in complex with sucrose and phosphate

Fieulaine, S., Lunn, J.E., Borel, F., Ferrer, J.-L.

(2005) Plant Cell 17: 2049-2058

Released	2005-06-14
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Synechocystis sp. PCC 6803
Macromolecule	Sucrose-Phosphatase (protein)
Unique Ligands	MG, PO4
Unique branched monosaccharides	FRU, GLC

Explore in 3D

1U0U \| pdb_00001u0u	Download File View File

An Aldol Switch Discovered in Stilbene Synthases Mediates Cyclization Specificity of Type III Polyketide Synthases: Pine stilbene synthase structure

Austin, M.B., Bowman, M.E., Ferrer, J.-L., Schroder, J., Noel, J.P.

(2004) Chem Biol 11: 1179-1194

Released	2004-10-12
Method	X-RAY DIFFRACTION 2.11 Å
Organisms	Pinus sylvestris
Macromolecule	Dihydropinosylvin synthase (protein)

Explore in 3D

1U0V \| pdb_00001u0v	Download File View File

An Aldol Switch Discovered in Stilbene Synthases Mediates Cyclization of Specificity of Type III Polyketide Synthases: 18xCHS structure

Austin, M.B., Bowman, M.E., Ferrer, J.-L., Schroder, J., Noel, J.P.

(2004) Chem Biol 11: 1179-1194

Released	2004-10-12
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Medicago sativa
Macromolecule	Chalcone synthase 2 (protein)

Explore in 3D

1U0W \| pdb_00001u0w	Download File View File

An Aldol Switch Discovered in Stilbene Synthases Mediates Cyclization Specificity of Type III Polyketide Synthases: 18xCHS+resveratrol Structure

Austin, M.B., Bowman, M.E., Ferrer, J.-L., Schroder, J., Noel, J.P.

(2004) Chem Biol 11: 1179-1194

Released	2004-10-12
Method	X-RAY DIFFRACTION 2 Å
Organisms	Medicago sativa
Macromolecule	Chalcone synthase 2 (protein)
Unique Ligands	STL

Explore in 3D

1U1H \| pdb_00001u1h	Download File View File

A. thaliana cobalamine independent methionine synthase

Ferrer, J.-L., Ravanel, S., Robert, M., Dumas, R.

(2004) J Biological Chem 279: 44235-44238

Released	2004-09-02
Method	X-RAY DIFFRACTION 2.55 Å
Organisms	Arabidopsis thaliana
Macromolecule	5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (protein)
Unique Ligands	MET, SO4, ZN

Explore in 3D

1U1J \| pdb_00001u1j	Download File View File

A. thaliana cobalamine independent methionine synthase

Ferrer, J.-L., Ravanel, S., Robert, M., Dumas, R.

(2004) J Biological Chem 279: 44235-44238

Released	2004-09-14
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Arabidopsis thaliana
Macromolecule	5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (protein)
Unique Ligands	C2F, MET, SO4, ZN

Explore in 3D

1U1U \| pdb_00001u1u	Download File View File

A. thaliana cobalamine independent methionine synthase

Ferrer, J.-L., Ravanel, S., Robert, M., Dumas, R.

(2004) J Biological Chem 279: 44235-44238

Released	2004-09-07
Method	X-RAY DIFFRACTION 2.95 Å
Organisms	Arabidopsis thaliana
Macromolecule	5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (protein)
Unique Ligands	SO4, ZN

Explore in 3D

1U22 \| pdb_00001u22	Download File View File

A. thaliana cobalamine independent methionine synthase

Ferrer, J.-L., Ravanel, S., Robert, M., Dumas, R.

(2004) J Biological Chem 279: 44235-44238

Released	2004-09-07
Method	X-RAY DIFFRACTION 2.65 Å
Organisms	Arabidopsis thaliana
Macromolecule	5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (protein)
Unique Ligands	HCS, SO4, THG, ZN

Explore in 3D

1U2S \| pdb_00001u2s	Download File View File

X-Ray structure of the sucrose-phosphatase (SPP) from Synechocystis sp. PCC6803 in complex with glucose

Fieulaine, S., Lunn, J.E., Borel, F., Ferrer, J.-L.

(2005) Plant Cell 17: 2049-2058

Released	2005-06-14
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Synechocystis sp. PCC 6803
Macromolecule	sucrose-phosphatase (protein)
Unique Ligands	GLC, MG

Explore in 3D

1U2T \| pdb_00001u2t	Download File View File

X-Ray structure of the sucrose-phosphatase (SPP) from Synechocystis sp. PCC6803 in complex with sucrose6P

Fieulaine, S., Lunn, J.E., Borel, F., Ferrer, J.-L.

(2005) Plant Cell 17: 2049-2058

Released	2005-06-14
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Synechocystis sp. PCC 6803
Macromolecule	sucrose-phosphatase (SPP) (protein)
Unique branched monosaccharides	F6P, GLC

Explore in 3D

1XIU \| pdb_00001xiu	Download File View File

Crystal structure of the agonist-bound ligand-binding domain of Biomphalaria glabrata RXR

De Groot, A., De Rosny, E., Juillan-Binard, C., Ferrer, J.-L., Laudet, V., Pebay-Peroula, E., Fontecilla-Camps, J.-C., Borel, F.

(2005) J Mol Biology 354: 841-853

Released	2005-09-13
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Biomphalaria glabrata Homo sapiens
Macromolecule	Nuclear receptor coactivator 1 (protein) RXR-like protein (protein)
Unique Ligands	9CR

Explore in 3D

1ZC2 \| pdb_00001zc2	Download File View File

Crystal Structure of plasmid-encoded class C beta-lactamase CMY-2 complexed with citrate molecule

Bauvois, C., Jacquamet, L., Fieulaine, S., Frere, J.-M., Galleni, M., Ferrer, J.-L.

To be published

Released	2006-04-25
Method	X-RAY DIFFRACTION 2.09 Å
Organisms	Klebsiella pneumoniae
Macromolecule	beta-lactamase class C (protein)
Unique Ligands	CIT

Explore in 3D

1ZXZ \| pdb_00001zxz	Download File View File

X-ray structure of peptide deformylase from Arabidopsis thaliana (AtPDF1A); crystals grown in PEG-5000 MME as precipitant

Fieulaine, S., Juillan-Binard, C., Serero, A., Dardel, F., Giglione, C., Meinnel, T., Ferrer, J.-L.

(2005) J Biological Chem 280: 42315-42324

Released	2005-09-27
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Arabidopsis thaliana
Macromolecule	Peptide deformylase, mitochondrial (protein)
Unique Ligands	ZN

Explore in 3D

1ZY0 \| pdb_00001zy0	Download File View File

X-ray structure of peptide deformylase from Arabidopsis thaliana (AtPDF1A); crystals grown in PEG-6000

Fieulaine, S., Juillan-Binard, C., Serero, A., Dardel, F., Giglione, C., Meinnel, T., Ferrer, J.-L.

(2005) J Biological Chem 280: 42315-42324

Released	2005-09-27
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Arabidopsis thaliana
Macromolecule	Peptide deformylase, mitochondrial (protein)
Unique Ligands	ZN

Explore in 3D

1ZY1 \| pdb_00001zy1	Download File View File

X-ray structure of peptide deformylase from Arabidopsis thaliana (AtPDF1A) in complex with Met-Ala-Ser

Fieulaine, S., Juillan-Binard, C., Serero, A., Dardel, F., Giglione, C., Meinnel, T., Ferrer, J.-L.

(2005) J Biological Chem 280: 42315-42324

Released	2005-09-27
Method	X-RAY DIFFRACTION 3 Å
Organisms	Arabidopsis thaliana
Macromolecule	Peptide deformylase, mitochondrial (protein) tripeptide fragment (protein)
Unique Ligands	ZN

Explore in 3D

2B1Q \| pdb_00002b1q	Download File View File

X-ray structure of the sucrose-phosphatase (SPP) from Synechocystis sp.PCC6803 in complex with trehalose

Fieulaine, S., Lunn, J.E., Ferrer, J.-L.

(2007) Proteins 68: 796-801

Released	2006-09-12
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Synechocystis sp. PCC 6803
Macromolecule	hypothetical protein slr0953 (protein)
Unique Ligands	MG
Unique branched monosaccharides	GLC

Explore in 3D

2B1R \| pdb_00002b1r	Download File View File

X-ray structure of the sucrose-phosphatase (SPP) from Synechocystis sp.PCC6803 in complex with cellobiose

Fieulaine, S., Lunn, J.E., Ferrer, J.-L.

(2007) Proteins 68: 796-801

Released	2006-09-12
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Synechocystis sp. PCC 6803
Macromolecule	hypothetical protein slr0953 (protein)
Unique Ligands	MG
Unique branched monosaccharides	BGC

Explore in 3D

2D2V \| pdb_00002d2v	Download File View File

X-ray structure of the sucrose-phosphatase (SPP) from Synechocystis sp.PCC6803 in complex with maltose

Fieulaine, S., Lunn, J.E., Ferrer, J.-L.

(2007) Proteins 68: 796-801

Released	2006-09-12
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Synechocystis sp. PCC 6803
Macromolecule	hypothetical protein slr0953 (protein)
Unique Ligands	MG
Unique branched monosaccharides	GLC

1 to 25 of 37 Structures

Page 1 of 2

Sort by

About
About Us
Citing Us
Publications
Team
Careers
Usage & Privacy

Support
Contact Us
Help
Website FAQ
Glossary
Service Status

RCSB PDB is hosted by

RCSB PDB is a member of the

RCSB Partners
Nucleic Acid Knowledgebase

wwPDB Partners
RCSB PDB
PDBe
PDBj
BMRB
EMDB

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

Prepare Data

Validate Data

Deposit Data

Help and Resources

Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

1ND7 | pdb_00001nd7

1OSH | pdb_00001osh

1QLV | pdb_00001qlv

1SUI | pdb_00001sui

1SUS | pdb_00001sus

1TJ3 | pdb_00001tj3

1TJ4 | pdb_00001tj4

1TJ5 | pdb_00001tj5

1U0U | pdb_00001u0u

1U0V | pdb_00001u0v

1U0W | pdb_00001u0w

1U1H | pdb_00001u1h

1U1J | pdb_00001u1j

1U1U | pdb_00001u1u

1U22 | pdb_00001u22

1U2S | pdb_00001u2s

1U2T | pdb_00001u2t

1XIU | pdb_00001xiu

1ZC2 | pdb_00001zc2

1ZXZ | pdb_00001zxz

1ZY0 | pdb_00001zy0

1ZY1 | pdb_00001zy1

2B1Q | pdb_00002b1q

2B1R | pdb_00002b1r

2D2V | pdb_00002d2v