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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Fischer, E.S."

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Search Summary

This query matches 96 Structures.

Refinements

Structure Determination Methodology

experimental (96)

Scientific Name of Source Organism

	Homo sapiens (95)
	synthetic construct (8)
	Danio rerio (6)
	Escherichia coli (3)
	Gallus gallus (3)
	Mus musculus (3)
	Mycolicibacterium thermoresistibile ATCC 19527 (1)
	Saccharomyces cerevisiae (1)

Taxonomy

	Eukaryota (95)
	other sequences (8)
	Bacteria (4)

Experimental Method

	X-RAY DIFFRACTION (68)
	ELECTRON MICROSCOPY (28)

Polymer Entity Type

	Protein (96)
	DNA (8)
	RNA (2)

Refinement Resolution (Å)

	1.5 - 2.0 (10)
	2.0 - 2.5 (8)
	2.5 - 3.0 (11)
	3.0 - 3.5 (39)
	3.5 - 4.0 (21)
	4.0 - 4.5 (2)
	> 4.5 (5)

Release Date

	2010 - 2014 (15)
	2015 - 2019 (14)
	2020 - 2024 (64)
	2025 - 2029 (3)

Enzyme Classification Name

	Transferases (58)
	Ligases (11)
	Hydrolases (8)

Membrane Protein Annotation

PDBTM (1)

Symmetry Type

	Asymmetric (81)
	Cyclic (11)
	Dihedral (3)
	Helical (1)

SCOP Classification

	Alpha and beta proteins (a+b) (6)
	Alpha and beta proteins (a/b) (3)
	Artifacts (4)

AllSelected

1 to 25 of 96 Structures

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4A08 \| pdb_00004a08	Download File View File

Structure of hsDDB1-drDDB2 bound to a 13 bp CPD-duplex (purine at D-1 position) at 3.0 A resolution (CPD 1)

Scrima, A., Fischer, E.S., Iwai, S., Gut, H., Thoma, N.H.

(2011) Cell 147: 1024

Released	2011-11-30
Method	X-RAY DIFFRACTION 3 Å
Organisms	Danio rerio Homo sapiens synthetic construct
Macromolecule	DNA DAMAGE-BINDING PROTEIN 1 (protein) DNA DAMAGE-BINDING PROTEIN 2 (protein) 5'-D(APCPGPCPGPAP(TTD)PGPCPGPCPCPC)-3' (nucleic acid) 5'-D(TPGPGPGPCPGPCPCPCPTPCPGPCP*G)-3' (nucleic acid)
Unique Ligands	CA, MES

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4A09 \| pdb_00004a09	Download File View File

Structure of hsDDB1-drDDB2 bound to a 15 bp CPD-duplex (purine at D-1 position) at 3.1 A resolution (CPD 2)

Scrima, A., Fischer, E.S., Iwai, S., Gut, H., Thoma, N.H.

(2011) Cell 147: 1024

Released	2011-11-30
Method	X-RAY DIFFRACTION 3.1 Å
Organisms	Danio rerio Homo sapiens synthetic construct
Macromolecule	DNA DAMAGE-BINDING PROTEIN 1 (protein) DNA DAMAGE-BINDING PROTEIN 2 (protein) 5'-D(CPCPTPGPCPTPCPCPTPTPTPCPAPCPCPC)-3' (nucleic acid) 5'-D(GPGPTPGPAPAPAP(TTD)PAPGPCPAPGPGP)-3' (nucleic acid)
Unique Ligands	CA

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4A0A \| pdb_00004a0a	Download File View File

Structure of hsDDB1-drDDB2 bound to a 16 bp CPD-duplex (pyrimidine at D-1 position) at 3.6 A resolution (CPD 3)

Scrima, A., Fischer, E.S., Iwai, S., Gut, H., Thoma, N.H.

(2011) Cell 147: 1024

Released	2011-11-30
Method	X-RAY DIFFRACTION 3.6 Å
Organisms	Danio rerio Homo sapiens synthetic construct
Macromolecule	DNA DAMAGE-BINDING PROTEIN 1 (protein) DNA DAMAGE-BINDING PROTEIN 2 (protein) 5'-D(CPCPTPGPCPTPCPCPTPTPTPCPAPCPCPC)-3' (nucleic acid) 5'-D(GPGPTPGPAPAPAP(TTD)PAPGPCPAPGPDGP)-3' (nucleic acid)
Unique Ligands	CA

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4A0B \| pdb_00004a0b	Download File View File

Structure of hsDDB1-drDDB2 bound to a 16 bp CPD-duplex (pyrimidine at D-1 position) at 3.8 A resolution (CPD 4)

Scrima, A., Fischer, E.S., Iwai, S., Gut, H., Thoma, N.H.

(2011) Cell 147: 1024

Released	2011-11-30
Method	X-RAY DIFFRACTION 3.8 Å
Organisms	Danio rerio Homo sapiens synthetic construct
Macromolecule	DNA DAMAGE-BINDING PROTEIN 1 (protein) DNA DAMAGE-BINDING PROTEIN 2 (protein) 5'-D(CPCPTPGPCPTPCPCPTPTPTPCPAPCPCPC)-3' (nucleic acid) 5'-D(DGPGPTPGPAPAPAP(TTD)PAPGPCPAPGPDGP)-3' (nucleic acid)

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4A0C \| pdb_00004a0c	Download File View File

Structure of the CAND1-CUL4B-RBX1 complex

Scrima, A., Fischer, E.S., Faty, M., Gut, H., Thoma, N.H.

(2011) Cell 147: 1024

Released	2011-11-30
Method	X-RAY DIFFRACTION 3.8 Å
Organisms	Homo sapiens Mus musculus
Macromolecule	CULLIN-4B (protein) CULLIN-ASSOCIATED NEDD8-DISSOCIATED PROTEIN 1 (protein) E3 UBIQUITIN-PROTEIN LIGASE RBX1 (protein)
Unique Ligands	ZN

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4A0K \| pdb_00004a0k	Download File View File

STRUCTURE OF DDB1-DDB2-CUL4A-RBX1 BOUND TO A 12 BP ABASIC SITE CONTAINING DNA-DUPLEX

Fischer, E.S., Scrima, A., Gut, H., Thoma, N.H.

(2011) Cell 147: 1024

Released	2011-12-14
Method	X-RAY DIFFRACTION 5.93 Å
Organisms	Danio rerio Homo sapiens Mus musculus synthetic construct
Macromolecule	Unique protein chains: 4 Unique nucleic acid chains: 2

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4A0L \| pdb_00004a0l	Download File View File

Structure of DDB1-DDB2-CUL4B-RBX1 bound to a 12 bp abasic site containing DNA-duplex

Fischer, E.S., Scrima, A., Gut, H., Thoma, N.H.

(2011) Cell 147: 1024

Released	2011-12-14
Method	X-RAY DIFFRACTION 7.4 Å
Organisms	Danio rerio Homo sapiens Mus musculus synthetic construct
Macromolecule	Unique protein chains: 4 Unique nucleic acid chains: 2

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4A11 \| pdb_00004a11	Download File View File

Structure of the hsDDB1-hsCSA complex

Bohm, K., Scrima, A., Fischer, E.S., Gut, H., Thomae, N.H.

(2011) Cell 147: 1024

Released	2011-12-07
Method	X-RAY DIFFRACTION 3.31 Å
Organisms	Homo sapiens
Macromolecule	DNA DAMAGE-BINDING PROTEIN 1 (protein) DNA EXCISION REPAIR PROTEIN ERCC-8 (protein)

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4CI1 \| pdb_00004ci1	Download File View File

Structure of the DDB1-CRBN E3 ubiquitin ligase bound to thalidomide

Fischer, E.S., Boehm, K., Thoma, N.H.

(2014) Nature 512: 49

Released	2014-07-16
Method	X-RAY DIFFRACTION 2.98 Å
Organisms	Gallus gallus Homo sapiens
Macromolecule	DNA DAMAGE-BINDING PROTEIN 1 (protein) PROTEIN CEREBLON (protein)
Unique Ligands	EF2, ZN

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4CI2 \| pdb_00004ci2	Download File View File

Structure of the DDB1-CRBN E3 ubiquitin ligase bound to lenalidomide

Fischer, E.S., Boehm, K., Thoma, N.H.

(2014) Nature 512: 49

Released	2014-07-16
Method	X-RAY DIFFRACTION 2.95 Å
Organisms	Gallus gallus Homo sapiens
Macromolecule	DNA DAMAGE-BINDING PROTEIN 1 (protein) PROTEIN CEREBLON (protein)
Unique Ligands	LVY, ZN

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4CI3 \| pdb_00004ci3	Download File View File

Structure of the DDB1-CRBN E3 ubiquitin ligase bound to Pomalidomide

Fischer, E.S., Boehm, K., Thoma, N.H.

(2014) Nature 512: 49

Released	2014-07-16
Method	X-RAY DIFFRACTION 3.5 Å
Organisms	Gallus gallus Homo sapiens
Macromolecule	DNA DAMAGE-BINDING PROTEIN 1 (protein) PROTEIN CEREBLON (protein)
Unique Ligands	Y70, ZN

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4D0P \| pdb_00004d0p	Download File View File

Crystal structure of human CSN4

Bunker, R.D., Lingaraju, G.M., Thoma, N.H.

(2014) Nature 512: 161

Released	2014-07-23
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Homo sapiens
Macromolecule	COP9 SIGNALOSOME COMPLEX SUBUNIT 4 (protein)
Unique Ligands	CL, EDO, NA

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4D10 \| pdb_00004d10	Download File View File

Crystal structure of the COP9 signalosome

Bunker, R.D., Lingaraju, G.M., Thoma, N.H.

(2014) Nature 512: 161

Released	2014-07-23
Method	X-RAY DIFFRACTION 3.8 Å
Organisms	Homo sapiens
Macromolecule	Unique protein chains: 8
Unique Ligands	ZN

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4D18 \| pdb_00004d18	Download File View File

Crystal structure of the COP9 signalosome

Bunker, R.D., Lingaraju, G.M., Thoma, N.H.

(2014) Nature 512: 161

Released	2014-07-23
Method	X-RAY DIFFRACTION 4.08 Å
Organisms	Homo sapiens
Macromolecule	Unique protein chains: 8
Unique Ligands	ZN

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4U7J \| pdb_00004u7j	Download File View File

Crystal structure of Argininosuccinate synthase from Mycobacterium thermoresistibile

Seattle Structural Genomics Center for Infectious Disease (SSGCID)

To be published

Released	2014-09-24
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Mycolicibacterium thermoresistibile ATCC 19527
Macromolecule	Argininosuccinate synthase (protein)
Unique Ligands	CL, EDO

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4WSN \| pdb_00004wsn	Download File View File

Crystal structure of the COP9 signalosome, a P1 crystal form

Bunker, R.D., Lingaraju, G.M., Thoma, N.H.

(2016) Nature 531: 598-603

Released	2015-12-23
Method	X-RAY DIFFRACTION 5.5 Å
Organisms	Homo sapiens
Macromolecule	Unique protein chains: 8
Unique Ligands	ZN

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5FQD \| pdb_00005fqd	Download File View File

Structural basis of Lenalidomide induced CK1a degradation by the crl4crbn ubiquitin ligase

Petzold, G., Fischer, E.S., Thoma, N.H.

(2016) Nature 532: 127

Released	2016-02-24
Method	X-RAY DIFFRACTION 2.45 Å
Organisms	Homo sapiens
Macromolecule	CASEIN KINASE I ISOFORM ALPHA (protein) DNA DAMAGE-BINDING PROTEIN 1 (protein) PROTEIN CEREBLON (protein)
Unique Ligands	LVY, ZN

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5V9L \| pdb_00005v9l	Download File View File

KRAS G12C in bound to quinazoline based switch II pocket (SWIIP) binder

Westover, K., Lu, J.

(2017) Cell Chem Biol 24: 1005-1016.e3

Released	2017-08-23
Method	X-RAY DIFFRACTION 1.981 Å
Organisms	Homo sapiens
Macromolecule	GTPase KRas (protein)
Unique Ligands	91D, GDP, MG

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5V9O \| pdb_00005v9o	Download File View File

KRAS G12C inhibitor

Westover, K., Lu, J.

(2017) Cell Chem Biol 24: 1005-1016.e3

Released	2017-08-23
Method	X-RAY DIFFRACTION 1.56 Å
Organisms	Homo sapiens
Macromolecule	GTPase KRas (protein)
Unique Ligands	91G, GDP, MG

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6BN7 \| pdb_00006bn7	Download File View File

Crystal structure of DDB1-CRBN-BRD4(BD1) complex bound to dBET23 PROTAC.

Nowak, R.P., DeAngelo, S.L., Buckley, D., Bradner, J.E., Fischer, E.S.

(2018) Nat Chem Biol 14: 706-714

Released	2018-05-30
Method	X-RAY DIFFRACTION 3.501 Å
Organisms	Homo sapiens
Macromolecule	Bromodomain-containing protein 4 (protein) DNA damage-binding protein 1 (protein) Protein cereblon (protein)
Unique Ligands	RN3, ZN

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6BN8 \| pdb_00006bn8	Download File View File

Crystal structure of DDB1-CRBN-BRD4(BD1) complex bound to dBET55 PROTAC.

Nowak, R.P., DeAngelo, S.L., Buckley, D., Bradner, J.E., Fischer, E.S.

(2018) Nat Chem Biol 14: 706-714

Released	2018-06-06
Method	X-RAY DIFFRACTION 3.99003499985 Å
Organisms	Homo sapiens
Macromolecule	Bromodomain-containing protein 4 (protein) DNA damage-binding protein 1,DNA damage-binding protein 1 (protein) Protein cereblon (protein)
Unique Ligands	ZN

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6BN9 \| pdb_00006bn9	Download File View File

Crystal structure of DDB1-CRBN-BRD4(BD1) complex bound to dBET70 PROTAC

Nowak, R.P., DeAngelo, S.L., Buckley, D., Bradner, J.E., Fischer, E.S.

(2018) Nat Chem Biol 14: 706-714

Released	2018-05-30
Method	X-RAY DIFFRACTION 4.382 Å
Organisms	Homo sapiens
Macromolecule	Bromodomain-containing protein 4 (protein) DNA damage-binding protein 1,DNA damage-binding protein 1 (protein) Protein cereblon (protein)
Unique Ligands	ZN

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6BNB \| pdb_00006bnb	Download File View File

Crystal structure of DDB1-CRBN-BRD4(BD1) complex bound to dBET57 PROTAC

Nowak, R.P., DeAngelo, S.L., Buckley, D., Ishoey, M., He, Z., Zhang, T., Bradner, J.E., Fischer, E.S.

(2018) Nat Chem Biol 14: 706-714

Released	2018-05-30
Method	X-RAY DIFFRACTION 6.343 Å
Organisms	Homo sapiens
Macromolecule	Bromodomain-containing protein 4 (protein) DNA damage-binding protein 1 (protein) Protein cereblon (protein)
Unique Ligands	ZN

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6BOY \| pdb_00006boy	Download File View File

Crystal structure of DDB1-CRBN-BRD4(BD1) complex bound to dBET6 PROTAC.

Nowak, R.P., DeAngelo, S.L., Buckley, D., Bradner, J.E., Fischer, E.S.

(2018) Nat Chem Biol 14: 706-714

Released	2018-05-30
Method	X-RAY DIFFRACTION 3.33 Å
Organisms	Homo sapiens
Macromolecule	Bromodomain-containing protein 4 (protein) DNA damage-binding protein 1 (protein) Protein cereblon (protein)
Unique Ligands	RN6, ZN

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6CT9 \| pdb_00006ct9	Download File View File

Structure of the human cGAS-DNA complex

Zhou, W., Whiteley, A.T., de Oliveira Mann, C.C., Morehouse, B.R., Mekalanos, J.J., Kranzusch, P.J.

(2018) Cell 174: 300-311.e11

Released	2018-07-18
Method	X-RAY DIFFRACTION 2.26 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	Cyclic GMP-AMP synthase (protein) DNA (5'-D(APAPAPTPTPGPCPCPGPAPAPGPAPCPGPA)-3') (nucleic acid) DNA (5'-D(PCPGPTPCPTPTPCPGPGPCPAPAP*T)-3') (nucleic acid)
Unique Ligands	ZN

1 to 25 of 96 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

4A08 | pdb_00004a08

4A09 | pdb_00004a09

4A0A | pdb_00004a0a

4A0B | pdb_00004a0b

4A0C | pdb_00004a0c

4A0K | pdb_00004a0k

4A0L | pdb_00004a0l

4A11 | pdb_00004a11

4CI1 | pdb_00004ci1

4CI2 | pdb_00004ci2

4CI3 | pdb_00004ci3

4D0P | pdb_00004d0p

4D10 | pdb_00004d10

4D18 | pdb_00004d18

4U7J | pdb_00004u7j

4WSN | pdb_00004wsn

5FQD | pdb_00005fqd

5V9L | pdb_00005v9l

5V9O | pdb_00005v9o

6BN7 | pdb_00006bn7

6BN8 | pdb_00006bn8

6BN9 | pdb_00006bn9

6BNB | pdb_00006bnb

6BOY | pdb_00006boy

6CT9 | pdb_00006ct9