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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Fujita, T."

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Search Summary

This query matches 36 Structures.

Refinements

Structure Determination Methodology

experimental (36)

Scientific Name of Source Organism

	Homo sapiens (26)
	Thermococcus kodakarensis KOD1 (6)
	Escherichia coli (2)
	Discosoma sp. (1)
	Equus caballus (1)
	Escherichia coli 113303 (1)
	Escherichia coli 2-427-07_S4_C3 (1)
	Escherichia coli 2.3916 (1)
	Escherichia coli 2362-75 (1)
	Escherichia coli 3-373-03_S4_C2 (1)

More...

Taxonomy

	Eukaryota (28)
	Archaea (6)
	Bacteria (2)

Experimental Method

	X-RAY DIFFRACTION (32)
	SOLUTION NMR (3)
	ELECTRON MICROSCOPY (1)

Polymer Entity Type

	Protein (36)
	RNA (1)

Refinement Resolution (Å)

	1.0 - 1.5 (2)
	1.5 - 2.0 (15)
	2.0 - 2.5 (5)
	2.5 - 3.0 (9)
	3.0 - 3.5 (2)

Release Date

	2000 - 2004 (2)
	2005 - 2009 (24)
	2010 - 2014 (1)
	2015 - 2019 (6)
	2020 - 2024 (3)

Enzyme Classification Name

	Hydrolases (5)
	Transferases (6)

Symmetry Type

	Asymmetric (23)
	Cyclic (13)

SCOP Classification

	Alpha and beta proteins (a+b) (24)
	All beta proteins (9)
	All alpha proteins (2)
	Artifacts (2)

AllSelected

1 to 25 of 36 Structures

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1D8L \| pdb_00001d8l	Download File View File

E. COLI HOLLIDAY JUNCTION BINDING PROTEIN RUVA NH2 REGION LACKING DOMAIN III

Nishino, T., Iwasaki, H., Kataoka, M., Ariyoshi, M., Fujita, T., Shinagawa, H., Morikawa, K.

(2000) J Mol Biology 298: 407-416

Released	2000-05-03
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Escherichia coli
Macromolecule	PROTEIN (HOLLIDAY JUNCTION DNA HELICASE RUVA) (protein)

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1J2F \| pdb_00001j2f	Download File View File

X-ray crystal structure of IRF-3 and its functional implications

Takahasi, K., Noda, N., Horiuchi, M., Mori, M., Okabe, Y., Fukuhara, Y., Terasawa, H., Fujita, T., Inagaki, F.

(2003) Nat Struct Biol 10: 922-927

Released	2003-11-25
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Homo sapiens
Macromolecule	Interferon regulatory factor 3 (protein)

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2E7A \| pdb_00002e7a	Download File View File

TNF Receptor Subtype One-selective TNF Mutant with Antagonistic Activity

Mukai, Y., Yamagata, Y., Tsutsumi, Y.

(2008) J Biological Chem 283: 998-1007

Released	2007-11-13
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Homo sapiens
Macromolecule	Tumor necrosis factor (protein)

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2J0G \| pdb_00002j0g	Download File View File

L-ficolin complexed to N-acetyl-mannosamine

Garlatti, V., Gaboriaud, C.

(2007) EMBO J 26: 623

Released	2007-01-23
Method	X-RAY DIFFRACTION 2.85 Å
Organisms	Homo sapiens
Macromolecule	FICOLIN-2 (protein)
Unique Ligands	BM3, CA, MAN
Unique branched monosaccharides	FUC, MAN, NAG

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2J0H \| pdb_00002j0h	Download File View File

L-ficolin complexed to acetyl-choline

Garlatti, V., Gaboriaud, C.

(2007) EMBO J 26: 623

Released	2007-01-23
Method	X-RAY DIFFRACTION 2.85 Å
Organisms	Homo sapiens
Macromolecule	FICOLIN-2 (protein)
Unique Ligands	ACH, CA
Unique branched monosaccharides	BMA, NAG

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2J0Y \| pdb_00002j0y	Download File View File

L-ficolin complexed to b-1,3-D-glucan

Garlatti, V., Gaboriaud, C.

(2007) EMBO J 26: 623

Released	2007-01-23
Method	X-RAY DIFFRACTION 2.35 Å
Organisms	Homo sapiens
Macromolecule	FICOLIN-2 (protein)
Unique Ligands	ACT, BGC, CA, NAG
Unique branched monosaccharides	BGC, BMA, NAG

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2J1G \| pdb_00002j1g	Download File View File

L-ficolin complexed to N-acetyl-cystein

Garlatti, V., Gaboriaud, C.

(2007) EMBO J 26: 623

Released	2007-01-23
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Homo sapiens
Macromolecule	FICOLIN-2 (protein)
Unique Ligands	ACT, CA, P4C, SC2
Unique branched monosaccharides	BMA, FUC, MAN, NAG

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2J2P \| pdb_00002j2p	Download File View File

L-ficolin complexed to N-acetyl-cystein (150mM)

Garlatti, V., Gaboriaud, C.

(2007) EMBO J 26: 623

Released	2007-01-23
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Homo sapiens
Macromolecule	FICOLIN-2 (protein)
Unique Ligands	BMA, CA, SC2
Unique branched monosaccharides	NAG

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2J3F \| pdb_00002j3f	Download File View File

L-ficolin complexed to N-acetyl-D-galactosamine

Garlatti, V., Gaboriaud, C.

(2007) EMBO J 26: 623

Released	2007-01-23
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Homo sapiens
Macromolecule	FICOLIN-2 (protein)
Unique Ligands	A2G, CA, EPE, P4C
Unique branched monosaccharides	BMA, FUC, MAN, NAG

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2J3G \| pdb_00002j3g	Download File View File

L-ficolin

Garlatti, V., Gaboriaud, C.

(2007) EMBO J 26: 623

Released	2007-01-23
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Homo sapiens
Macromolecule	FICOLIN-2 (protein)
Unique Ligands	CA, P4C
Unique branched monosaccharides	BMA, FUC, MAN, NAG

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2J3O \| pdb_00002j3o	Download File View File

L-ficolin complexed to N-acetyl-D-glucosamine

Garlatti, V., Gaboriaud, C.

(2007) EMBO J 26: 623

Released	2007-01-23
Method	X-RAY DIFFRACTION 2.65 Å
Organisms	Homo sapiens
Macromolecule	FICOLIN-2 (protein)
Unique Ligands	ACT, CA, NAG

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2J3U \| pdb_00002j3u	Download File View File

L-ficolin complexed to galactose

Garlatti, V., Gaboriaud, C.

(2007) EMBO J 26: 623

Released	2007-01-23
Method	X-RAY DIFFRACTION 2.15 Å
Organisms	Homo sapiens
Macromolecule	FICOLIN-2 (protein)
Unique Ligands	ACT, CA, EPE, GLA, MAN, NAG, P4C
Unique branched monosaccharides	NAG

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2J5Z \| pdb_00002j5z	Download File View File

H-ficolin complexed to galactose

Garlatti, V., Gaboriaud, C.

(2007) EMBO J 26: 623

Released	2007-01-23
Method	X-RAY DIFFRACTION 1.73 Å
Organisms	Homo sapiens
Macromolecule	FICOLIN-3 (protein)
Unique Ligands	ACT, CA, GAL

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2J60 \| pdb_00002j60	Download File View File

H-ficolin complexed to D-fucose

Garlatti, V., Gaboriaud, C.

(2007) EMBO J 26: 623

Released	2007-01-23
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Homo sapiens
Macromolecule	FICOLIN-3 (protein)
Unique Ligands	ABE, ACT, CA

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2J61 \| pdb_00002j61	Download File View File

L-ficolin complexed to N-acetylglucosamine (forme C)

Garlatti, V., Gaboriaud, C.

(2007) EMBO J 26: 623

Released	2007-01-23
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Homo sapiens
Macromolecule	FICOLIN-2 (protein)
Unique Ligands	CA, NAG

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2J64 \| pdb_00002j64	Download File View File

H-ficolin

Garlatti, V., Gaboriaud, C.

(2007) EMBO J 26: 623

Released	2007-01-23
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Homo sapiens
Macromolecule	FICOLIN-3 (protein)
Unique Ligands	CA

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2JHH \| pdb_00002jhh	Download File View File

Structure of globular heads of M-ficolin at acidic pH

Garlatti, V., Martin, L., Gout, E., Reiser, J.B., Arlaud, G.J., Thielens, N.M., Gaboriaud, C.

(2007) J Biological Chem 282: 35814-35820

Released	2007-10-09
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Homo sapiens
Macromolecule	FICOLIN-1 (protein)
Unique Ligands	CA

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2JHI \| pdb_00002jhi	Download File View File

Structure of globular heads of M-ficolin complexed with N-acetyl-D- galactosamine

Garlatti, V., Martin, L., Gout, E., Reiser, J.B., Arlaud, G.J., Thielens, N.M., Gaboriaud, C.

(2007) J Biological Chem 282: 35814

Released	2007-10-09
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Homo sapiens
Macromolecule	FICOLIN-1 (protein)
Unique Ligands	A2G, CA

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2JHK \| pdb_00002jhk	Download File View File

Structure of globular heads of M-ficolin complexed with N-acetyl-D- glucosamine

Garlatti, V., Martin, L., Gout, E., Reiser, J.B., Arlaud, G.J., Thielens, N.M., Gaboriaud, C.

(2007) J Biological Chem 282: 35814

Released	2007-10-09
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Homo sapiens
Macromolecule	FICOLIN-1 (protein)
Unique Ligands	CA, NAG

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2JHL \| pdb_00002jhl	Download File View File

Structure of globular heads of M-ficolin complexed with sialic acid

Garlatti, V., Martin, L., Gout, E., Reiser, J.B., Arlaud, G.J., Thielens, N.M., Gaboriaud, C.

(2007) J Biological Chem 282: 35814

Released	2007-10-09
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Homo sapiens
Macromolecule	FICOLIN-1 (protein)
Unique Ligands	CA, SLB

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2JHM \| pdb_00002jhm	Download File View File

Structure of globular heads of M-ficolin at neutral pH

Garlatti, V., Martin, L., Gout, E., Reiser, J.B., Arlaud, G.J., Thielens, N.M., Gaboriaud, C.

(2007) J Biological Chem 282: 35814

Released	2007-10-09
Method	X-RAY DIFFRACTION 1.52 Å
Organisms	Homo sapiens
Macromolecule	FICOLIN-1 (protein)
Unique Ligands	CA, EPE, IPA

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2QFB \| pdb_00002qfb	Download File View File

Crystal structure of the regulatory domain of human RIG-I with bound Zn

Cui, S., Lammens, A., Lammens, K., Hopfner, K.P.

(2008) Mol Cell 29: 169-179

Released	2008-02-12
Method	X-RAY DIFFRACTION 3 Å
Organisms	Homo sapiens
Macromolecule	Probable ATP-dependent RNA helicase DDX58 (protein)
Unique Ligands	ZN

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2QFD \| pdb_00002qfd	Download File View File

Crystal structure of the regulatory domain of human RIG-I with bound Hg

Cui, S., Lammens, A., Lammens, K., Hopfner, K.P.

(2008) Mol Cell 29: 169-179

Released	2008-02-12
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Homo sapiens
Macromolecule	Probable ATP-dependent RNA helicase DDX58 (protein)
Unique Ligands	HG

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2RMJ \| pdb_00002rmj	Download File View File

Solution structure of RIG-I C-terminal domain

Takahasi, K., Yoneyama, M., Nihishori, T., Hirai, R., Narita, R., Gale Jr., M., Fujita, T., Inagaki, F.

(2008) Mol Cell 29: 428-440

Released	2008-03-25
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Probable ATP-dependent RNA helicase DDX58 (protein)

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2RQA \| pdb_00002rqa	Download File View File

Solution structure of LGP2 CTD

Takahasi, K., Kumeta, H., Tsuduki, N., Narita, R., Shigemoto, T., Hirai, R., Yoneyama, M., Horiuchi, M., Ogura, K., Fujita, T., Fuyuhiko, I.

(2009) J Biological Chem 284: 17465-17474

Released	2009-05-05
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	ATP-dependent RNA helicase DHX58 (protein)
Unique Ligands	ZN

1 to 25 of 36 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

1D8L | pdb_00001d8l

1J2F | pdb_00001j2f

2E7A | pdb_00002e7a

2J0G | pdb_00002j0g

2J0H | pdb_00002j0h

2J0Y | pdb_00002j0y

2J1G | pdb_00002j1g

2J2P | pdb_00002j2p

2J3F | pdb_00002j3f

2J3G | pdb_00002j3g

2J3O | pdb_00002j3o

2J3U | pdb_00002j3u

2J5Z | pdb_00002j5z

2J60 | pdb_00002j60

2J61 | pdb_00002j61

2J64 | pdb_00002j64

2JHH | pdb_00002jhh

2JHI | pdb_00002jhi

2JHK | pdb_00002jhk

2JHL | pdb_00002jhl

2JHM | pdb_00002jhm

2QFB | pdb_00002qfb

2QFD | pdb_00002qfd

2RMJ | pdb_00002rmj

2RQA | pdb_00002rqa