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232,829 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Gonen, T."

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Search Summary

This query matches 184 Structures.

Refinements

Structure Determination Methodology

experimental (184)

Scientific Name of Source Organism

	Parengyodontium album (49)
	Homo sapiens (33)
	synthetic construct (25)
	Mus musculus (15)
	Danio rerio (8)
	Gallus gallus (8)
	Bluetongue virus (serotype 1 / isolate South Africa) (7)
	Bos taurus (4)
	Pseudomonas aeruginosa PAO1 (4)
	Saccharomyces cerevisiae (4)

More...

Taxonomy

	Eukaryota (120)
	Bacteria (28)
	other sequences (25)
	Riboviria (13)
	Archaea (10)

Experimental Method

	ELECTRON CRYSTALLOGRAPHY (122)
	X-RAY DIFFRACTION (38)
	ELECTRON MICROSCOPY (23)
	SOLID-STATE NMR (1)
	SOLUTION NMR (1)
	SOLUTION SCATTERING (1)

Polymer Entity Type

	Protein (183)
	DNA (1)
	RNA (1)

Refinement Resolution (Å)

	0.5 - 1.0 (7)
	1.0 - 1.5 (48)
	1.5 - 2.0 (31)
	2.0 - 2.5 (30)
	2.5 - 3.0 (27)
	3.0 - 3.5 (22)
	3.5 - 4.0 (8)
	4.0 - 4.5 (3)
	> 4.5 (7)

Release Date

	2000 - 2004 (1)
	2005 - 2009 (2)
	2010 - 2014 (22)
	2015 - 2019 (94)
	2020 - 2024 (65)

Enzyme Classification Name

	Hydrolases (69)
	Transferases (14)
	Isomerases (7)
	Lyases (1)
	Oxidoreductases (2)

Membrane Protein Annotation

	PDBTM (21)
	MemProtMD (19)
	mpstruc (17)
	OPM (16)

Symmetry Type

	Asymmetric (126)
	Cyclic (27)
	Tetrahedral (11)
	Helical (10)
	Dihedral (5)
	Icosahedral (3)
	Octahedral (2)

SCOP Classification

	Alpha and beta proteins (a/b) (23)
	All beta proteins (10)
	All alpha proteins (2)
	Alpha and beta proteins (a+b) (5)
	Membrane and cell surface proteins and peptides (3)
	Small proteins (2)

AllSelected

1 to 25 of 184 Structures

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1SOR	Download File View File

Aquaporin-0 membrane junctions reveal the structure of a closed water pore

Gonen, T., Sliz, P., Kistler, J., Cheng, Y., Walz, T.

(2004) Nature 429: 193-197

Released	2004-05-11
Method	ELECTRON CRYSTALLOGRAPHY 3 Å
Organisms	Ovis aries
Macromolecule	Aquaporin-0 (protein)

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2B6O	Download File View File

Electron crystallographic structure of lens Aquaporin-0 (AQP0) (lens MIP) at 1.9A resolution, in a closed pore state

Gonen, T., Cheng, Y., Sliz, P., Hiroaki, Y., Fujiyoshi, Y., Harrison, S.C., Walz, T.

(2005) Nature 438: 633-638

Released	2005-12-06
Method	ELECTRON CRYSTALLOGRAPHY 1.9 Å
Organisms	Ovis aries
Macromolecule	Lens fiber major intrinsic protein (protein)
Unique Ligands	MC3

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2B6P	Download File View File

X-ray structure of lens Aquaporin-0 (AQP0) (lens MIP) in an open pore state

Gonen, T., Cheng, Y., Sliz, P., Hiroaki, Y., Fujiyoshi, Y., Harrison, S.C., Walz, T.

(2005) Nature 438: 633-638

Released	2005-12-06
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Bos taurus
Macromolecule	Lens fiber major intrinsic protein (protein)

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2N0K	Download File View File

Chemical shift assignments and structure of the alpha-crystallin domain from human, HSPB5

Rajagopal, P., Klevit, R.E., Shi, L., Baker, D.

(2015) Elife 4:

Released	2015-06-03
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Alpha-crystallin B chain (protein)

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3J07	Download File View File

Model of a 24mer alphaB-crystallin multimer

Jehle, S., Vollmar, B., Bardiaux, B., Dove, K.K., Rajagopal, P., Gonen, T., Oschkinat, H., Klevit, R.E.

(2011) Proc Natl Acad Sci U S A 108: 6409-6414

Released	2016-01-20
Method	SOLID-STATE NMR SOLUTION SCATTERING ELECTRON MICROSCOPY 20 Å
Organisms	Homo sapiens
Macromolecule	Alpha-crystallin B chain (protein)

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3J41	Download File View File

Pseudo-atomic model of the Aquaporin-0/Calmodulin complex derived from electron microscopy

Reichow, S.L., Clemens, D.M., Freites, J.A., Nemeth-Cahalan, K.L., Heyden, M., Tobias, D.J., Hall, J.E., Gonen, T.

(2013) Nat Struct Mol Biol 20: 1085-1092

Released	2013-07-31
Method	ELECTRON MICROSCOPY 25 Å
Organisms	Homo sapiens Ovis aries
Macromolecule	Calmodulin (protein) Lens fiber major intrinsic protein (protein)
Unique Ligands	CA

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3J4G	Download File View File

Structure of lysozyme solved by MicroED to 2.9 A

Shi, D., Nannenga, B.L., Iadanza, M.G., Gonen, T.

(2013) Elife 2: e01345-e01345

Released	2013-11-13
Method	ELECTRON CRYSTALLOGRAPHY 2.901 Å
Organisms	Gallus gallus
Macromolecule	Lysozyme C (protein)

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3J4Q	Download File View File

Pseudo-atomic model of the AKAP18-PKA complex in a bent conformation derived from electron microscopy

Reichow, S.L., Gonen, T.

(2013) Elife 2: e01319-e01319

Released	2013-11-13
Method	ELECTRON MICROSCOPY 35 Å
Organisms	Homo sapiens Mus musculus
Macromolecule	A-kinase anchor protein 18 (protein) cAMP-dependent protein kinase catalytic subunit alpha (protein) cAMP-dependent protein kinase type II-alpha regulatory subunit (protein)

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3J4R	Download File View File

Pseudo-atomic model of the AKAP18-PKA Complex in a linear conformation derived from electron microscopy

Reichow, S.L., Gonen, T.

(2013) Elife 2: e01319-e01319

Released	2013-11-13
Method	ELECTRON MICROSCOPY 35 Å
Organisms	Homo sapiens Mus musculus
Macromolecule	A-kinase anchor protein 18 (protein) cAMP-dependent protein kinase catalytic subunit alpha (protein) cAMP-dependent protein kinase type II-alpha regulatory subunit (protein)

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3J6K	Download File View File

2.5A structure of lysozyme solved by MicroED

Nannenga, B.L., Shi, D., Leslie, A.G.W., Gonen, T.

(2014) Nat Methods 11: 927-930

Released	2014-08-13
Method	ELECTRON CRYSTALLOGRAPHY 2.5 Å
Organisms	Gallus gallus
Macromolecule	Lysozyme C (protein)

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3J7B	Download File View File

Catalase solved at 3.2 Angstrom resolution by MicroED

Nannenga, B.L., Shi, D., Hattne, J., Reyes, F.E., Gonen, T.

(2014) Elife 3: e03600-e03600

Released	2014-10-08
Method	ELECTRON CRYSTALLOGRAPHY 3.2 Å
Organisms	Bos taurus
Macromolecule	Catalase (protein)
Unique Ligands	HEM, NDP

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3NEK	Download File View File

Crystal structure of a nitrogen repressor-like protein MJ0159 from Methanococcus jannaschii

Bonanno, J.B., Patskovsky, Y., Malashkevich, V., Ozyurt, S., Dickey, M., Wu, B., Maletic, M., Rodgers, L., Koss, J., Sauder, J.M., Burley, S.K., Almo, S.C., New York SGX Research Center for Structural Genomics (NYSGXRC)

(2010) Structure 18: 1512-1521

Released	2010-06-23
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Methanocaldococcus jannaschii
Macromolecule	nitrogen repressor-like protein MJ0159 (protein)
Unique Ligands	GOL

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3VCD	Download File View File

Computationally Designed Self-assembling Octahedral Cage protein, O333, Crystallized in space group R32

Sawaya, M.R., King, N.P., Sheffler, W., Baker, D., Yeates, T.O.

(2012) Science 336: 1171-1174

Released	2012-06-06
Method	X-RAY DIFFRACTION 2.35 Å
Organisms	Salmonella enterica
Macromolecule	Propanediol utilization polyhedral body protein PduT (protein)
Unique Ligands	CL, SO4

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4DCL	Download File View File

Computationally Designed Self-assembling tetrahedron protein, T308, Crystallized in space group F23

Sawaya, M.R., King, N.P., Sheffler, W., Baker, D., Yeates, T.O.

(2012) Science 336: 1171-1174

Released	2012-06-06
Method	X-RAY DIFFRACTION 3.35 Å
Organisms	Staphylococcus aureus
Macromolecule	Putative acetyltransferase SACOL2570 (protein)

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4DDF	Download File View File

Computationally Designed Self-assembling Octahedral Cage protein, O333, Crystallized in space group P4

Sawaya, M.R., King, N.P., Sheffler, W., Baker, D., Yeates, T.O.

(2012) Science 336: 1171-1174

Released	2012-06-06
Method	X-RAY DIFFRACTION 3.15 Å
Organisms	Salmonella enterica
Macromolecule	Propanediol utilization polyhedral body protein PduT (protein)
Unique Ligands	CL, SO4

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4EGG	Download File View File

Computationally Designed Self-assembling tetrahedron protein, T310

Sawaya, M.R., King, N.P., Sheffler, W., Baker, D., Yeates, T.O.

(2012) Science 336: 1171-1174

Released	2012-05-30
Method	X-RAY DIFFRACTION 2.21 Å
Organisms	Staphylococcus aureus subsp. aureus COL
Macromolecule	Putative acetyltransferase SACOL2570 (protein)
Unique Ligands	GOL

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4JR9	Download File View File

Crystal structure of nitrate/nitrite exchanger NarK

Zheng, H., Wisedchaisri, G., Gonen, T.

(2013) Nature 497: 647-651

Released	2013-05-15
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Escherichia coli K-12 Mus musculus
Macromolecule	Immunoglobulin Gamma-2a, Heavy chain (protein) Immunoglobulin Kappa, Light chain (protein) Nitrite extrusion protein 1 (protein)
Unique Ligands	GYP

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4JRE	Download File View File

Crystal structure of nitrate/nitrite exchanger NarK with nitrite bound

Zheng, H., Wisedchaisri, G., Gonen, T.

(2013) Nature 497: 647-651

Released	2013-05-15
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Escherichia coli K-12 Mus musculus
Macromolecule	Immunoglobulin Gamma-2a, Heavy chain (protein) Immunoglobulin Kappa, Light chain (protein) Nitrite extrusion protein 1 (protein)
Unique Ligands	GYP, NO2

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4NWN	Download File View File

Computationally Designed Two-Component Self-Assembling Tetrahedral Cage T32-28

McNamara, D.E., King, N.P., Bale, J.B., Sheffler, W., Baker, D., Yeates, T.O.

(2014) Nature 510: 103-108

Released	2014-05-28
Method	X-RAY DIFFRACTION 4.5 Å
Organisms	Campylobacter jejuni subsp. jejuni 81-176 Salmonella enterica subsp. enterica serovar Typhimurium str. STm5
Macromolecule	Propanediol utilization: polyhedral bodies pduT (protein) Uncharacterized protein (protein)

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4NWO	Download File View File

Computationally Designed Two-Component Self-Assembling Tetrahedral Cage T33-15

McNamara, D.E., King, N.P., Bale, J.B., Sheffler, W., Baker, D., Yeates, T.O.

(2014) Nature 510: 103-108

Released	2014-05-28
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Shewanella oneidensis Thermus thermophilus
Macromolecule	Chorismate mutase AroH (protein) Molybdenum cofactor biosynthesis protein MogA (protein)
Unique Ligands	CA

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4NWP	Download File View File

Computationally Designed Two-Component Self-Assembling Tetrahedral Cage, T33-21, Crystallized in Space Group R32

McNamara, D.E., King, N.P., Bale, J.B., Sheffler, W., Baker, D., Yeates, T.O.

(2014) Nature 510: 103-108

Released	2014-05-28
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Pseudomonas aeruginosa PAO1 Pyrococcus horikoshii OT3
Macromolecule	Putative uncharacterized protein (protein) Uncharacterized protein (protein)
Unique Ligands	NH4, SO4

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4NWQ	Download File View File

Computationally Designed Two-Component Self-Assembling Tetrahedral Cage, T33-21, Crystallized in Space Group F4132

McNamara, D.E., King, N.P., Bale, J.B., Sheffler, W., Baker, D., Yeates, T.O.

(2014) Nature 510: 103-108

Released	2014-05-28
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Pseudomonas aeruginosa PAO1 Pyrococcus horikoshii OT3
Macromolecule	Putative uncharacterized protein PH0671 (protein) Uncharacterized protein (protein)
Unique Ligands	SO4

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4NWR	Download File View File

Computationally Designed Two-Component Self-Assembling Tetrahedral Cage T33-28

McNamara, D.E., King, N.P., Bale, J.B., Sheffler, W., Baker, D., Yeates, T.O.

(2014) Nature 510: 103-108

Released	2014-05-28
Method	X-RAY DIFFRACTION 3.5 Å
Organisms	Leishmania major uncultured bacterium
Macromolecule	Macrophage migration inhibitory factor-like protein (protein) integron gene cassette protein (protein)