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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Guo, Y."

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Search Summary

This query matches 592 Structures.

Refinements

Structure Determination Methodology

experimental (592)

Scientific Name of Source Organism

	Homo sapiens (238)
	Severe acute respiratory syndrome coronavirus 2 (95)
	Human immunodeficiency virus 1 (35)
	Mus musculus (32)
	Ureaplasma diversum (21)
	synthetic construct (18)
	Macaca mulatta (17)
	Ebinur lake virus (15)
	Escherichia coli (13)
	Oryza sativa Japonica Group (12)

More...

Taxonomy

	Eukaryota (326)
	Riboviria (192)
	Bacteria (190)
	other sequences (18)
	Varidnaviria (15)
	Eukaryota (eukaryotes) (7)
	Archaea (4)
	Duplodnaviria (2)
	Monodnaviria (2)
	Riboviria (RNA viruses and viroids) (2)

More...

Experimental Method

	X-RAY DIFFRACTION (405)
	ELECTRON MICROSCOPY (186)
	SOLUTION NMR (1)

Polymer Entity Type

	Protein (583)
	RNA (17)
	DNA (11)

Refinement Resolution (Å)

	0.5 - 1.0 (1)
	1.0 - 1.5 (16)
	1.5 - 2.0 (115)
	2.0 - 2.5 (145)
	2.5 - 3.0 (120)
	3.0 - 3.5 (127)
	3.5 - 4.0 (50)
	4.0 - 4.5 (9)
	> 4.5 (8)

Release Date

	2000 - 2004 (8)
	2005 - 2009 (41)
	2010 - 2014 (62)
	2015 - 2019 (103)
	2020 - 2024 (346)
	2025 - 2029 (32)

Enzyme Classification Name

	Hydrolases (108)
	Transferases (73)
	Oxidoreductases (32)
	Lyases (14)
	Ligases (8)
	Isomerases (5)
	Translocases (5)

Membrane Protein Annotation

	PDBTM (62)
	mpstruc (48)
	OPM (37)
	MemProtMD (37)

Symmetry Type

	Asymmetric (323)
	Cyclic (227)
	Octahedral (24)
	Dihedral (14)
	Icosahedral (9)
	Tetrahedral (1)

SCOP Classification

	All beta proteins (49)
	Alpha and beta proteins (a+b) (39)
	Alpha and beta proteins (a/b) (31)
	Artifacts (17)
	All alpha proteins (12)
	Membrane and cell surface proteins and peptides (5)
	Small proteins (3)
	Coiled coil proteins (2)

AllSelected

1 to 25 of 592 Structures

Page 1 of 24

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1FBM \| pdb_00001fbm	Download File View File

ASSEMBLY DOMAIN OF CARTILAGE OLIGOMERIC MATRIX PROTEIN IN COMPLEX WITH ALL-TRANS RETINOL

Guo, Y., Bozic, D., Malashkevich, V.N., Kammerer, R.A., Schulthess, T.

(1998) EMBO J 17: 5265-5272

Released	2000-08-02
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Rattus norvegicus
Macromolecule	PROTEIN (CARTILAGE OLIGOMERIC MATRIX PROTEIN) (protein)
Unique Ligands	RTL

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1Q5V \| pdb_00001q5v	Download File View File

Apo-NikR

Schreiter, E.R., Sintchak, M.D., Guo, Y., Chivers, P.T., Sauer, R.T., Drennan, C.L.

(2003) Nat Struct Biol 10: 794-799

Released	2003-09-30
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Escherichia coli
Macromolecule	Nickel responsive regulator (protein)

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1Q5Y \| pdb_00001q5y	Download File View File

Nickel-Bound C-terminal Regulatory Domain of NikR

Schreiter, E.R., Sintchak, M.D., Guo, Y., Chivers, P.T., Sauer, R.T., Drennan, C.L.

(2003) Nat Struct Biol 10: 794-799

Released	2003-09-30
Method	X-RAY DIFFRACTION 1.4 Å
Organisms	Escherichia coli
Macromolecule	Nickel responsive regulator (protein)
Unique Ligands	EDO, NI

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1R5I \| pdb_00001r5i	Download File View File

Crystal structure of the MAM-MHC complex

Zhao, Y., Li, Z., Drozd, S.J., Guo, Y., Mourad, W., Li, H.

(2004) Structure 12: 277-288

Released	2004-03-16
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Homo sapiens Influenza A virus (strain A/Swine/Hong Kong/81/1978 H3N2) Metamycoplasma arthritidis
Macromolecule	HLA class II histocompatibility antigen, DR alpha chain (protein) HLA class II histocompatibility antigen, DRB1-1 beta chain (protein) Hemagglutinin peptide (protein) superantigen (protein)
Unique Ligands	PO4

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1SL4 \| pdb_00001sl4	Download File View File

Crystal Structure of DC-SIGN carbohydrate recognition domain complexed with Man4

Guo, Y., Feinberg, H., Conroy, E., Mitchell, D.A., Alvarez, R., Blixt, O., Taylor, M.E., Weis, W.I., Drickamer, K.

(2004) Nat Struct Mol Biol 11: 591-598

Released	2004-06-15
Method	X-RAY DIFFRACTION 1.55 Å
Organisms	Homo sapiens
Macromolecule	mDC-SIGN1B type I isoform (protein)
Unique Ligands	CA
Unique branched monosaccharides	MAN

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1SL5 \| pdb_00001sl5	Download File View File

Crystal Structure of DC-SIGN carbohydrate recognition domain complexed with LNFP III (Dextra L504).

Guo, Y., Feinberg, H., Conroy, E., Mitchell, D.A., Alvarez, R., Blixt, O., Taylor, M.E., Weis, W.I., Drickamer, K.

(2004) Nat Struct Mol Biol 11: 591-598

Released	2004-06-15
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Homo sapiens
Macromolecule	mDC-SIGN1B type I isoform (protein)
Unique Ligands	CA, MG
Unique branched monosaccharides	FUC, GAL, NAG

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1SL6 \| pdb_00001sl6	Download File View File

Crystal Structure of a fragment of DC-SIGNR (containg the carbohydrate recognition domain and two repeats of the neck) complexed with Lewis-x.

Guo, Y., Feinberg, H., Conroy, E., Mitchell, D.A., Alvarez, R., Blixt, O., Taylor, M.E., Weis, W.I., Drickamer, K.

(2004) Nat Struct Mol Biol 11: 591-598

Released	2004-06-15
Method	X-RAY DIFFRACTION 2.25 Å
Organisms	Homo sapiens
Macromolecule	C-type lectin DC-SIGNR (protein)
Unique Ligands	CA
Unique branched monosaccharides	FUC, GAL, NDG

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1XAR \| pdb_00001xar	Download File View File

Crystal Structure of a fragment of DC-SIGNR (containing the carbohydrate recognition domain and two repeats of the neck).

Feinberg, H., Guo, Y., Mitchell, D.A., Drickamer, K., Weis, W.I.

(2005) J Biological Chem 280: 1327-1335

Released	2004-11-16
Method	X-RAY DIFFRACTION 2.25 Å
Organisms	Homo sapiens
Macromolecule	CD209 antigen-like protein 1 (protein)
Unique Ligands	NA

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1ZKY \| pdb_00001zky	Download File View File

Human Estrogen Receptor Alpha Ligand-Binding Domain In Complex With OBCP-3M and A Glucocorticoid Receptor Interacting Protein 1 Nr Box II Peptide

Rajan, S.S., Hsieh, R.W., Sharma, S.K., Hahm, J.B., Nettles, K.W., Greene, G.L.

(2006) J Biological Chem 281: 17909-17919

Released	2006-05-09
Method	X-RAY DIFFRACTION 2.25 Å
Organisms	Homo sapiens
Macromolecule	Estrogen receptor (protein) Nuclear receptor coactivator 2 (protein)
Unique Ligands	689

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1ZP5 \| pdb_00001zp5	Download File View File

Crystal structure of the complex between MMP-8 and a N-hydroxyurea inhibitor

Campestre, C., Agamennone, M., Tortorella, P., Preziuso, S., Biasone, A., Gavuzzo, E., Pochetti, G., Mazza, F., Tschesche, H., Gallina, C.

(2006) Bioorg Med Chem Lett 16: 20-24

Released	2005-12-06
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Homo sapiens
Macromolecule	Neutrophil collagenase (protein)
Unique Ligands	2NI, CA, ZN

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2AXH \| pdb_00002axh	Download File View File

Crystal structures of T cell receptor beta chains related to rheumatoid arthritis

Li, H., Van Vranken, S., Zhao, Y., Li, Z., Guo, Y., Eisele, L., Li, Y.

(2005) Protein Sci 14: 3025-3038

Released	2005-09-20
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Homo sapiens
Macromolecule	T cell receptor beta chain (protein)

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2AXJ \| pdb_00002axj	Download File View File

Crystal structures of T cell receptor beta chains related to rheumatoid arthritis

Li, H., Van Vranken, S., Zhao, Y., Li, Z., Guo, Y., Eisele, L., Li, Y.

(2005) Protein Sci 14: 3025-3038

Released	2005-09-20
Method	X-RAY DIFFRACTION 2.65 Å
Organisms	Homo sapiens
Macromolecule	SF4 T cell receptor beta chain (protein)

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2B1V \| pdb_00002b1v	Download File View File

Human estrogen receptor alpha ligand-binding domain in complex with OBCP-1M and a glucocorticoid receptor interacting protein 1 NR box II peptide

Rajan, S.S., Hsieh, R.W., Sharma, S.K., Greene, G.L.

(2006) J Biological Chem 281: 17909-17919

Released	2006-05-09
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Homo sapiens
Macromolecule	Estrogen receptor (protein) Nuclear receptor coactivator 2 (protein)
Unique Ligands	458

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2FAI \| pdb_00002fai	Download File View File

Human Estrogen Receptor Alpha Ligand-Binding Domain In Complex With OBCP-2M and A Glucocorticoid Receptor Interacting Protein 1 NR Box II Peptide

Rajan, S.S., Hsieh, R.W., Sharma, S.K., Greene, G.L.

(2006) J Biological Chem 281: 17909-17919

Released	2006-05-09
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens
Macromolecule	Estrogen receptor (protein) Nuclear receptor coactivator 2 (protein)
Unique Ligands	459

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2ICW \| pdb_00002icw	Download File View File

Crystal structure of a complete ternary complex between TCR, superantigen, and peptide-MHC class II molecule

Wang, L., Zhao, Y., Li, H.

(2007) Nat Struct Mol Biol 14: 169-171

Released	2007-03-20
Method	X-RAY DIFFRACTION 2.41 Å
Organisms	Homo sapiens Metamycoplasma arthritidis Mus musculus
Macromolecule	Unique protein chains: 6

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2N17 \| pdb_00002n17	Download File View File

NMR structure of a Kazal-type serine protease inhibitor from the subterranean termite defense gland of Coptotermes formosanus Shiraki soldiers

Negulescu, H., Guo, Y., Garner, T.P., Goodwin, O.Y., Henderson, G., Laine, R.A., Macnaughtan, M.A.

(2015) PLoS One 10: e0125376-e0125376

Released	2015-05-06
Method	SOLUTION NMR
Organisms	Coptotermes formosanus
Macromolecule	Lysozyme-Protease Inhibitor Protein (protein)

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2OJE \| pdb_00002oje	Download File View File

Mycoplasma arthritidis-derived mitogen complexed with class II MHC molecule HLA-DR1/HA complex in the presence of EDTA

Li, H., Zhao, Y., Guo, Y., Li, Z., Eisele, L., Mourad, W.

(2007) J Biological Chem 282: 5991-6000

Released	2007-01-23
Method	X-RAY DIFFRACTION 3 Å
Organisms	Homo sapiens Influenza A virus Metamycoplasma arthritidis
Macromolecule	HLA class II histocompatibility antigen, DR alpha chain precursor (protein) HLA class II histocompatibility antigen, DRB1-1 beta chain precursor (protein) Superantigen (protein) haemagglutinin peptide 306-318 (protein)
Unique Ligands	PO4

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2OSL \| pdb_00002osl	Download File View File

Crystal structure of Rituximab Fab in complex with an epitope peptide

Du, J., Zhong, C., Ding, J.

(2007) J Biological Chem 282: 15073-15080

Released	2007-04-10
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Homo sapiens Mus musculus
Macromolecule	B-lymphocyte antigen CD20 (protein) heavy chain of the Rituximab Fab fragment,heavy chain of the Rituximab Fab fragment (protein) light chain of the Rituximab Fab fragment,light chain of the Rituximab Fab fragment (protein)

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2OY0 \| pdb_00002oy0	Download File View File

Crystal structure of the West Nile virus methyltransferase

Li, H.M., Zhao, Y.W., Guo, Y., Shi, P.Y.

(2007) J Virol 81: 3891-3903

Released	2007-04-03
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	West Nile virus
Macromolecule	Methyltransferase (protein)
Unique Ligands	SAH

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2P15 \| pdb_00002p15	Download File View File

Crystal structure of the ER alpha ligand binding domain with the agonist ortho-trifluoromethylphenylvinyl estradiol

Bruning, J.B., Nettles, K.W., Greene, G.L., Kim, Y.

(2007) EMBO Rep 8: 563-568

Released	2007-05-01
Method	X-RAY DIFFRACTION 1.94 Å
Organisms	Homo sapiens
Macromolecule	Estrogen receptor (protein) GRIP peptide (protein)
Unique Ligands	EZT