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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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Search Summary

This query matches 335 Structures.

Refinements

Structure Determination Methodology

experimental (335)

Scientific Name of Source Organism

	Homo sapiens (190)
	Mus musculus (57)
	synthetic construct (42)
	Severe acute respiratory syndrome coronavirus 2 (28)
	Lama glama (23)
	Bos taurus (21)
	Rattus norvegicus (20)
	Xenopus tropicalis (18)
	Escherichia coli (12)
	Mycobacterium tuberculosis (10)

More...

Taxonomy

	Eukaryota (267)
	Bacteria (57)
	other sequences (42)
	Riboviria (34)
	Duplodnaviria (5)
	Eukaryota (eukaryotes) (2)
	Varidnaviria (2)
	Archaea (1)

Experimental Method

	X-RAY DIFFRACTION (184)
	ELECTRON MICROSCOPY (149)
	SOLUTION NMR (2)

Polymer Entity Type

	Protein (335)
	DNA (15)
	RNA (2)

Refinement Resolution (Å)

	1.0 - 1.5 (3)
	1.5 - 2.0 (47)
	2.0 - 2.5 (75)
	2.5 - 3.0 (104)
	3.0 - 3.5 (78)
	3.5 - 4.0 (17)
	4.0 - 4.5 (4)
	> 4.5 (5)

Release Date

	1995 - 1999 (1)
	2000 - 2004 (11)
	2005 - 2009 (35)
	2010 - 2014 (66)
	2015 - 2019 (26)
	2020 - 2024 (181)
	2025 - 2029 (15)

Enzyme Classification Name

	Hydrolases (119)
	Transferases (52)
	Oxidoreductases (18)
	Ligases (16)
	Isomerases (5)
	Translocases (5)
	Lyases (3)

Membrane Protein Annotation

	PDBTM (98)
	mpstruc (56)
	OPM (41)
	MemProtMD (44)

Symmetry Type

	Asymmetric (241)
	Cyclic (93)
	Dihedral (9)
	Helical (1)

SCOP Classification

	Alpha and beta proteins (a/b) (32)
	All alpha proteins (34)
	Alpha and beta proteins (a+b) (21)
	Artifacts (19)
	Small proteins (13)
	All beta proteins (17)
	Coiled coil proteins (1)
	Membrane and cell surface proteins and peptides (1)
	Multi-domain proteins (alpha and beta) (1)

AllSelected

1 to 25 of 335 Structures

Page 1 of 14

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1FLR \| pdb_00001flr	Download File View File

4-4-20 FAB FRAGMENT

Whitlow, M.

(1995) Protein Eng 8: 749-761

Released	1995-09-15
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Mus musculus
Macromolecule	4-4-20 (IG*G2A=KAPPA=) FAB FRAGMENT (protein)
Unique Ligands	FLU

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1HZP \| pdb_00001hzp	Download File View File

Crystal Structure of the Myobacterium Tuberculosis Beta-Ketoacyl-Acyl Carrier Protein Synthase III

Scarsdale, J.N., Kazanina, G., He, X., Reynolds, K.A., Wright, H.T., TB Structural Genomics Consortium (TBSGC)

(2001) J Biological Chem 276: 20516-20522

Released	2001-06-13
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Mycobacterium tuberculosis
Macromolecule	3-OXOACYL-[ACYL-CARRIER-PROTEIN] SYNTHASE III (protein)
Unique Ligands	DAO, GOL

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1I1R \| pdb_00001i1r	Download File View File

CRYSTAL STRUCTURE OF A CYTOKINE/RECEPTOR COMPLEX

Chow, D., He, X., Snow, A.L., Rose-John, S., Garcia, K.C.

(2001) Science 291: 2150-2150

Released	2001-03-28
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Homo sapiens Human gammaherpesvirus 8
Macromolecule	INTERLEUKIN-6 RECEPTOR BETA CHAIN (protein) VIRAL IL-6 (protein)

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1K8D \| pdb_00001k8d	Download File View File

crystal structure of the non-classical MHC class Ib Qa-2 complexed with a self peptide

He, X., Tabaczewski, P., Ho, J., Stroynowski, I., Garcia, K.C.

(2001) Structure 9: 1213-1224

Released	2001-12-19
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Mus musculus
Macromolecule	60S RIBOSOMAL PROTEIN (protein) BETA-2-MICROGLOBULIN (protein) QA-2 antigen (protein)

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1MHQ \| pdb_00001mhq	Download File View File

Crystal Structure Of Human GGA2 VHS Domain

Zhu, G., Zhang, X.C.

(2003) FEBS Lett 537: 171-176

Released	2003-03-11
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Homo sapiens
Macromolecule	ADP-ribosylation factor binding protein GGA2 (protein)

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1NP2 \| pdb_00001np2	Download File View File

Crystal structure of thermostable beta-glycosidase from thermophilic eubacterium Thermus nonproteolyticus HG102

Liang, D.C., Chang, W.R., Wang, X.Q., He, X.Y.

(2003) J Bacteriol 185: 4248-4255

Released	2003-07-15
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Thermus nonproteolyticus
Macromolecule	beta-glycosidase (protein)

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1OXZ \| pdb_00001oxz	Download File View File

Crystal Structure of the Human GGA1 GAT domain

Zhu, G., Zhai, P., He, X., Terzyan, S., Zhang, R., Joachimiak, A., Tang, J., Zhang, X.C.

(2003) Biochemistry 42: 6392-6399

Released	2003-04-15
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Homo sapiens
Macromolecule	ADP-ribosylation factor binding protein GGA1 (protein)

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1PY1 \| pdb_00001py1	Download File View File

Complex of GGA1-VHS domain and beta-secretase C-terminal phosphopeptide

Zhu, G., Zhang, X.C.

(2003) Biochemistry 42: 12174-12180

Released	2003-11-04
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Homo sapiens
Macromolecule	ADP-ribosylation factor binding protein GGA1 (protein) Beta-secretase (protein)

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1Q32 \| pdb_00001q32	Download File View File

Crystal Structure Analysis of the Yeast Tyrosyl-DNA Phosphodiesterase

He, X., Babaoglu, K., Price, A., Nitiss, K.C., Nitiss, J.L., White, S.W.

(2007) J Mol Biology 372: 1070-1081

Released	2004-09-07
Method	X-RAY DIFFRACTION 2.03 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	tyrosyl-DNA phosphodiesterase (protein)

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1RKX \| pdb_00001rkx	Download File View File

Crystal Structure at 1.8 Angstrom of CDP-D-glucose 4,6-dehydratase from Yersinia pseudotuberculosis

Vogan, E.M., Bellamacina, C., He, X., Liu, H.W., Ringe, D., Petsko, G.A.

(2004) Biochemistry 43: 3057-3067

Released	2004-03-30
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Yersinia pseudotuberculosis
Macromolecule	CDP-glucose-4,6-dehydratase (protein)
Unique Ligands	NAD

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1S17 \| pdb_00001s17	Download File View File

Identification of Novel Potent Bicyclic Peptide Deformylase Inhibitors

Molteni, V., He, X., Nabakka, J., Yang, K., Kreusch, A., Gordon, P., Bursulaya, B., Ryder, N.S., Goldberg, R., He, Y.

(2004) Bioorg Med Chem Lett 14: 1477-1481

Released	2004-03-30
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Pseudomonas aeruginosa
Macromolecule	Peptide deformylase (protein)
Unique Ligands	GNR, GOL, NI

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1U6E \| pdb_00001u6e	Download File View File

1.85 Angstrom Crystal Structure of the C112A Mutant of Mycobacterium Tuberculosis Beta-Ketoacyl-Acyl Carrier Protein Synthase III (FabH)

Mussayev, F., Sachedeva, S., Scarsdale, J.N., Reynolds, K.A., Wright, H.T.

(2005) J Mol Biology 346: 1313-1321

Released	2005-05-24
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Mycobacterium tuberculosis
Macromolecule	3-oxoacyl-[acyl-carrier-protein] synthase III (protein)
Unique Ligands	CL

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1U6S \| pdb_00001u6s	Download File View File

Crystal Structure of the Complex Between Mycobacterium Tuberculosis Beta-Ketoacyl-Acyl Carrier Protein Synthase III and Lauroyl Coenzyme A

Musayev, F., Sachdeva, S., Scarsdale, J.N., Reynolds, K.A., Wright, H.T.

(2005) J Mol Biology 346: 1313-1321

Released	2005-03-22
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Mycobacterium tuberculosis
Macromolecule	3-oxoacyl-[acyl-carrier-protein] synthase III (protein)
Unique Ligands	DCC

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1X79 \| pdb_00001x79	Download File View File

Crystal structure of human GGA1 GAT domain complexed with the GAT-binding domain of Rabaptin5

Zhu, G., Zhang, X.C.

(2004) EMBO J 23: 3909-3917

Released	2004-10-12
Method	X-RAY DIFFRACTION 2.41 Å
Organisms	Homo sapiens
Macromolecule	ADP-ribosylation factor binding protein GGA1 (protein) Rab GTPase binding effector protein 1 (protein)
Unique Ligands	DTT, SO4

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2ACV \| pdb_00002acv	Download File View File

Crystal Structure of Medicago truncatula UGT71G1

Shao, H., He, X., Achnine, L., Blount, J.W., Dixon, R.A., Wang, X.

(2005) Plant Cell 17: 3141-3154

Released	2005-11-15
Method	X-RAY DIFFRACTION 2 Å
Organisms	Medicago truncatula
Macromolecule	triterpene UDP-glucosyl transferase UGT71G1 (protein)
Unique Ligands	UDP

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2ACW \| pdb_00002acw	Download File View File

Crystal Structure of Medicago truncatula UGT71G1 complexed with UDP-glucose

Shao, H., He, X., Achnine, L., Blount, J.W., Dixon, R.A., Wang, X.

(2005) Plant Cell 17: 3141-3154

Released	2005-11-15
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Medicago truncatula
Macromolecule	triterpene UDP-glucosyl transferase UGT71G1 (protein)
Unique Ligands	UPG

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2GAS \| pdb_00002gas	Download File View File

Crystal Structure of Isoflavone Reductase

Wang, X., He, X., Lin, J., Shao, H., Chang, Z., Dixon, R.A.

(2006) J Mol Biology 358: 1341-1352

Released	2006-04-25
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Medicago sativa
Macromolecule	isoflavone reductase (protein)

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2GFP \| pdb_00002gfp	Download File View File

Structure of the Multidrug Transporter EmrD from Escherichia coli

Yin, Y., He, X., Szewczyk, P., Nguyen, T., Chang, G.

(2006) Science 312: 741-744

Released	2006-05-16
Method	X-RAY DIFFRACTION 3.5 Å
Organisms	Escherichia coli
Macromolecule	Multidrug resistance protein D (protein)

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2IFG \| pdb_00002ifg	Download File View File

Structure of the extracellular segment of human TRKA in complex with nerve growth factor

He, X., Garcia, K.C.

(2007) Neuron 53: 25-38

Released	2007-02-13
Method	X-RAY DIFFRACTION 3.4 Å
Organisms	Homo sapiens
Macromolecule	Beta-nerve growth factor (protein) High affinity nerve growth factor receptor (protein)
Unique branched monosaccharides	BMA, MAN, NAG, NDG

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2NSD \| pdb_00002nsd	Download File View File

Enoyl acyl carrier protein reductase InhA in complex with N-(4-methylbenzoyl)-4-benzylpiperidine

He, X., Alian, A., Ortiz de Montellano, P.R.

(2007) Bioorg Med Chem 15: 6649-6658

Released	2007-09-18
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Mycobacterium tuberculosis H37Rv
Macromolecule	Enoyl-[acyl-carrier-protein] reductase (protein)
Unique Ligands	4PI, NAD

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2O26 \| pdb_00002o26	Download File View File

Structure of a class III RTK signaling assembly

Liu, H., Chen, X., Focia, P.J., He, X.

(2007) EMBO J 26: 891-901

Released	2007-03-13
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Mus musculus
Macromolecule	Kit ligand (protein) Mast/stem cell growth factor receptor (protein)
Unique branched monosaccharides	FUL, MAN, NAG

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2O27 \| pdb_00002o27	Download File View File

Structure of a class III RTK signaling assembly

Liu, H., Chen, X., Focia, P., He, X.

(2007) EMBO J 26: 891-901

Released	2007-03-13
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Mus musculus
Macromolecule	Kit ligand (protein)

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2QNX \| pdb_00002qnx	Download File View File

Crystal structure of the complex between the mycobacterium beta-ketoacyl-acyl carrier protein synthase III (FABH) and 11-[(decyloxycarbonyl)dithio]-undecanoic acid

Sachdeva, S., Musayev, F., Alhamadsheh, M., Scarsdale, J.N., Wright, H.T., Reynolds, K.A.

(2008) Chem Biol 15: 402-412

Released	2008-05-06
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Mycobacterium tuberculosis
Macromolecule	3-oxoacyl-[acyl-carrier-protein] synthase 3 (protein)
Unique Ligands	MDX, UDT

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2QNY \| pdb_00002qny	Download File View File

Crystal structure of the complex between the A246F mutant of mycobacterium beta-ketoacyl-acyl carrier protein synthase III (FABH) and SS-(2-hydroxyethyl) O-decyl ester carbono(dithioperoxoic) acid

Sachdeva, S., Musayev, F., Alhamadsheh, M., Scarsdale, J.N., Wright, H.T., Reynolds, K.A.

(2008) Chem Biol 15: 402-412

Released	2008-05-06
Method	X-RAY DIFFRACTION 2.15 Å
Organisms	Mycobacterium tuberculosis
Macromolecule	3-oxoacyl-[acyl-carrier-protein] synthase 3 (protein)
Unique Ligands	BME, DFD

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2QNZ \| pdb_00002qnz	Download File View File

Crystal structure of the complex between the mycobacterium beta-ketoacyl-acyl carrier protein synthase III (FABH) and SS-(2-hydroxyethyl)-O-decyl ester carbono(dithioperoxoic) acid

Sachdeva, S., Musayev, F., Alhamadsheh, M., Scarsdale, J.N., Wright, H.T., Reynolds, K.A.

(2008) Chem Biol 15: 402-412

Released	2008-05-06
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Mycobacterium tuberculosis
Macromolecule	3-oxoacyl-[acyl-carrier-protein] synthase 3 (protein)
Unique Ligands	BME, DFD

1 to 25 of 335 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1FLR | pdb_00001flr

1HZP | pdb_00001hzp

1I1R | pdb_00001i1r

1K8D | pdb_00001k8d

1MHQ | pdb_00001mhq

1NP2 | pdb_00001np2

1OXZ | pdb_00001oxz

1PY1 | pdb_00001py1

1Q32 | pdb_00001q32

1RKX | pdb_00001rkx

1S17 | pdb_00001s17

1U6E | pdb_00001u6e

1U6S | pdb_00001u6s

1X79 | pdb_00001x79

2ACV | pdb_00002acv

2ACW | pdb_00002acw

2GAS | pdb_00002gas

2GFP | pdb_00002gfp

2IFG | pdb_00002ifg

2NSD | pdb_00002nsd

2O26 | pdb_00002o26

2O27 | pdb_00002o27

2QNX | pdb_00002qnx

2QNY | pdb_00002qny

2QNZ | pdb_00002qnz