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232,829 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Hiroaki, Y."

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Search Summary

This query matches 15 Structures.

Refinements

Structure Determination Methodology

experimental (15)

Scientific Name of Source Organism

	Homo sapiens (8)
	Escherichia coli (4)
	Rattus norvegicus (4)
	Mus musculus (2)
	synthetic construct (2)
	Bos taurus (1)
	Caldalkalibacillus thermarum (1)
	Ovis aries (1)

Taxonomy

	Eukaryota (14)
	Bacteria (5)
	other sequences (2)

Experimental Method

	ELECTRON CRYSTALLOGRAPHY (7)
	ELECTRON MICROSCOPY (6)
	X-RAY DIFFRACTION (2)

Polymer Entity Type

Protein (15)

Refinement Resolution (Å)

	1.5 - 2.0 (2)
	2.0 - 2.5 (1)
	2.5 - 3.0 (2)
	3.0 - 3.5 (6)
	> 4.5 (4)

Release Date

	2000 - 2004 (1)
	2005 - 2009 (4)
	2010 - 2014 (4)
	2020 - 2024 (6)

Enzyme Classification Name

Hydrolases (2)

Membrane Protein Annotation

	PDBTM (12)
	OPM (9)
	mpstruc (9)
	MemProtMD (8)

Symmetry Type

	Cyclic (7)
	Asymmetric (7)
	Dihedral (1)

SCOP Classification

	Membrane and cell surface proteins and peptides (3)
	All beta proteins (1)
	Artifacts (1)

AllSelected

1 to 15 of 15 Structures

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1I2H	Download File View File

CRYSTAL STRUCTURE ANALYSIS OF PSD-ZIP45(HOMER1C/VESL-1L)CONSERVED HOMER 1 DOMAIN

Irie, K., Nakatsu, T., Mitsuoka, K., Fujiyoshi, Y., Kato, H.

(2002) J Mol Biology 318: 1117-1126

Released	2002-05-29
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Rattus norvegicus
Macromolecule	PSD-ZIP45(HOMER-1C/VESL-1L) (protein)

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2B6O	Download File View File

Electron crystallographic structure of lens Aquaporin-0 (AQP0) (lens MIP) at 1.9A resolution, in a closed pore state

Gonen, T., Cheng, Y., Sliz, P., Hiroaki, Y., Fujiyoshi, Y., Harrison, S.C., Walz, T.

(2005) Nature 438: 633-638

Released	2005-12-06
Method	ELECTRON CRYSTALLOGRAPHY 1.9 Å
Organisms	Ovis aries
Macromolecule	Lens fiber major intrinsic protein (protein)
Unique Ligands	MC3

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2B6P	Download File View File

X-ray structure of lens Aquaporin-0 (AQP0) (lens MIP) in an open pore state

Gonen, T., Cheng, Y., Sliz, P., Hiroaki, Y., Fujiyoshi, Y., Harrison, S.C., Walz, T.

(2005) Nature 438: 633-638

Released	2005-12-06
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Bos taurus
Macromolecule	Lens fiber major intrinsic protein (protein)

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2D57	Download File View File

Double layered 2D crystal structure of AQUAPORIN-4 (AQP4M23) at 3.2 a resolution by electron crystallography

Hiroaki, Y., Tani, K., Kamegawa, A., Gyobu, N., Nishikawa, K., Suzuki, H., Walz, T., Sasaki, S., Mitsuoka, K., Kimura, K., Mizoguchi, A., Fujiyoshi, Y.

(2005) J Mol Biology 355: 628-639

Released	2006-01-31
Method	ELECTRON CRYSTALLOGRAPHY 3.2 Å
Organisms	Rattus norvegicus
Macromolecule	Aquaporin-4 (protein)

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2ZZ9	Download File View File

Structure of aquaporin-4 S180D mutant at 2.8 A resolution by electron crystallography

Tani, K., Mitsuma, T., Hiroaki, Y., Kamegawa, A., Nishikawa, K., Tanimura, Y., Fujiyoshi, Y.

(2009) J Mol Biology 389: 694-706

Released	2009-06-09
Method	ELECTRON CRYSTALLOGRAPHY 2.8 Å
Organisms	Rattus norvegicus
Macromolecule	Aquaporin-4 (protein)
Unique Ligands	PEE

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3IYZ	Download File View File

Structure of Aquaporin-4 S180D mutant at 10.0 A resolution from electron micrograph

Mitsuma, T., Tani, K., Hiroaki, Y., Kamegawa, A., Suzuki, H., Hibino, H., Kurachi, Y., Fujiyoshi, Y.

(2010) J Mol Biology 402: 669-681

Released	2010-08-25
Method	ELECTRON CRYSTALLOGRAPHY 10 Å
Organisms	Rattus norvegicus
Macromolecule	Aquaporin-4 (protein)

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3IZ1	Download File View File

C-alpha model fitted into the EM structure of Cx26M34A

Oshima, A., Tani, K., Toloue, M.M., Hiroaki, Y., Smock, A., Inukai, S., Cone, A., Nicholson, B.J., Sosinsky, G.E., Fujiyoshi, Y.

(2011) J Mol Biology 405: 724-735

Released	2010-11-03
Method	ELECTRON CRYSTALLOGRAPHY
Organisms	Homo sapiens
Macromolecule	Gap junction beta-2 protein (protein)

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3IZ2	Download File View File

C-alpha model fitted into the EM structure of Cx26M34Adel2-7

Oshima, A., Tani, K., Toloue, M.M., Hiroaki, Y., Smock, A., Inukai, S., Cone, A., Nicholson, B.J., Sosinsky, G.E., Fujiyoshi, Y.

(2011) J Mol Biology 405: 724-735

Released	2010-11-03
Method	ELECTRON CRYSTALLOGRAPHY
Organisms	Homo sapiens
Macromolecule	Gap junction beta-2 protein (protein)

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4BGN	Download File View File

cryo-EM structure of the NavCt voltage-gated sodium channel

Tsai, C.J., Tani, K., Irie, K., Hiroaki, Y., Shimomura, T., Mcmillan, D.G., Cook, G.M., Schertler, G., Fujiyoshi, Y., Li, X.D.

(2013) J Mol Biology 425: 4074

Released	2013-07-10
Method	ELECTRON CRYSTALLOGRAPHY 9 Å
Organisms	Caldalkalibacillus thermarum
Macromolecule	VOLTAGE-GATED SODIUM CHANNEL (protein)

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7Y12	Download File View File

Cryo-EM structure of MrgD-Gi complex with beta-alanine

Suzuki, S., Iida, M., Kawamoto, A., Oshima, A.

(2022) Commun Biol 5: 707-707

Released	2022-07-20
Method	ELECTRON MICROSCOPY 3.1 Å
Organisms	Escherichia coli Homo sapiens Mus musculus synthetic construct
Macromolecule	Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2 (protein) Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1 (protein) Guanine nucleotide-binding protein G(i) subunit alpha-1 (protein) Soluble cytochrome b562,Mas-related G-protein coupled receptor member D (protein) scFV16 (protein)
Unique Ligands	BAL, PLM

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7Y13	Download File View File

Cryo-EM structure of apo-state MrgD-Gi complex (local)

Suzuki, S., Iida, M., Kawamoto, A., Oshima, A.

(2022) Commun Biol 5: 707-707

Released	2022-07-20
Method	ELECTRON MICROSCOPY 3.1 Å
Organisms	Escherichia coli Homo sapiens
Macromolecule	Soluble cytochrome b562,Mas-related G-protein coupled receptor member D (protein)
Unique Ligands	PLM

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7Y14	Download File View File

Cryo-EM structure of MrgD-Gi complex with beta-alanine (local)

Suzuki, S., Iida, M., Kawamoto, A., Oshima, A.

(2022) Commun Biol 5: 707-707

Released	2022-07-20
Method	ELECTRON MICROSCOPY 3.2 Å
Organisms	Escherichia coli Homo sapiens
Macromolecule	Soluble cytochrome b562,Mas-related G-protein coupled receptor member D (protein)
Unique Ligands	BAL, PLM

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7Y15	Download File View File

Cryo-EM structure of apo-state MrgD-Gi complex

Suzuki, S., Iida, M., Kawamoto, A., Oshima, A.

(2022) Commun Biol 5: 707-707

Released	2022-07-20
Method	ELECTRON MICROSCOPY 2.9 Å
Organisms	Escherichia coli Homo sapiens Mus musculus synthetic construct
Macromolecule	Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2 (protein) Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1 (protein) Guanine nucleotide-binding protein G(i) subunit alpha-1 (protein) Soluble cytochrome b562,Mas-related G-protein coupled receptor member D (protein) scFV16 (protein)
Unique Ligands	PLM

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8IF3	Download File View File

Structure of human alpha-2/delta-1 with mirogabalin

Kozai, D., Numoto, N., Fujiyoshi, Y.

(2023) J Mol Biology 435: 168049-168049

Released	2023-04-05
Method	ELECTRON MICROSCOPY 3.23 Å
Organisms	Homo sapiens
Macromolecule	Voltage-dependent calcium channel subunit alpha-2/delta-1 (protein)
Unique Ligands	8X9, NAG
Unique branched monosaccharides	NAG

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8IF4	Download File View File

Structure of human alpha-2/delta-1 without mirogabalin

Kozai, D., Numoto, N., Fujiyoshi, Y.

(2023) J Mol Biology 435: 168049-168049

Released	2023-04-05
Method	ELECTRON MICROSCOPY 3.23 Å
Organisms	Homo sapiens
Macromolecule	Voltage-dependent calcium channel subunit alpha-2/delta-1 (protein)
Unique Ligands	NAG
Unique branched monosaccharides	NAG