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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Hochberg, G.K.A."

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Search Summary

This query matches 32 Structures.

Refinements

Structure Determination Methodology

experimental (32)

Scientific Name of Source Organism

	synthetic construct (10)
	Synechococcus elongatus PCC 7942 = FACHB-805 (5)
	Klebsiella pneumoniae (4)
	Escherichia coli (3)
	Ectopseudomonas oleovorans (2)
	Geobacillus stearothermophilus (2)
	Pisum sativum (2)
	Aequorea victoria (1)
	Ananas comosus (1)
	Campylobacter jejuni (1)

More...

Taxonomy

	Bacteria (19)
	other sequences (10)
	Eukaryota (5)

Experimental Method

	ELECTRON MICROSCOPY (17)
	X-RAY DIFFRACTION (15)

Polymer Entity Type

	Protein (32)
	DNA (6)
	RNA (6)

Refinement Resolution (Å)

	1.5 - 2.0 (5)
	2.0 - 2.5 (5)
	2.5 - 3.0 (6)
	3.0 - 3.5 (9)
	3.5 - 4.0 (4)
	4.0 - 4.5 (1)
	> 4.5 (2)

Release Date

	2015 - 2019 (4)
	2020 - 2024 (28)

Enzyme Classification Name

	Lyases (5)
	Hydrolases (3)
	Isomerases (3)
	Translocases (3)

Membrane Protein Annotation

	mpstruc (3)
	OPM (2)
	PDBTM (2)

Symmetry Type

	Cyclic (9)
	Dihedral (14)
	Asymmetric (7)
	Octahedral (2)

SCOP Classification

	All beta proteins (2)
	Artifacts (1)

AllSelected

1 to 25 of 32 Structures

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5DS1 \| pdb_00005ds1	Download File View File

Core domain of the class II small heat-shock protein HSP 17.7 from Pisum sativum

Hochberg, G.K.A., Laganoswky, A., Allison, T.A., Shepherd, D.A., Benesch, J.L.P.

(2018) Science 359: 930-935

Released	2016-09-28
Method	X-RAY DIFFRACTION 2.63 Å
Organisms	Pisum sativum
Macromolecule	17.1 kDa class II heat shock protein (protein)

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5DS2 \| pdb_00005ds2	Download File View File

Core domain of the class I small heat-shock protein HSP 18.1 from Pisum sativum

Shepherd, D.A., Laganowsky, A., Allison, T.M., Hochberg, G.K.A., Benesch, J.L.P.

(2018) Science 359: 930-935

Released	2016-09-28
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Pisum sativum
Macromolecule	18.1 kDa class I heat shock protein (protein)
Unique Ligands	SO4

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6RVV \| pdb_00006rvv	Download File View File

Structure of left-handed protein cage consisting of 24 eleven-membered ring proteins held together by gold (I) bridges.

Malay, A.D., Miyazaki, N., Biela, A.P., Iwasaki, K., Heddle, J.G.

(2019) Nature 569: 438-442

Released	2019-06-12
Method	ELECTRON MICROSCOPY 3.7 Å
Organisms	Geobacillus stearothermophilus
Macromolecule	Transcription attenuation protein MtrB (protein)
Unique Ligands	AU

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6RVW \| pdb_00006rvw	Download File View File

Structure of right-handed protein cage consisting of 24 eleven-membered ring proteins held together by gold (I) bridges.

Malay, A.D., Miyazaki, N., Biela, A.P., Iwasaki, K., Heddle, J.G.

(2019) Nature 569: 438-442

Released	2019-06-12
Method	ELECTRON MICROSCOPY 3.7 Å
Organisms	Geobacillus stearothermophilus
Macromolecule	Transcription attenuation protein MtrB (protein)
Unique Ligands	AU

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7QSV \| pdb_00007qsv	Download File View File

L8-complex forming RubisCO derived from ancestral sequence reconstruction of the last common ancestor of Form I'' and Form I RubisCOs

Zarzycki, J., Schulz, L., Erb, T.J., Hochberg, G.K.A.

(2022) Science 378: 155-160

Released	2022-10-12
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	synthetic construct
Macromolecule	RubisCO large subunit (protein)
Unique Ligands	CAP, MG

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7QSW \| pdb_00007qsw	Download File View File

L8S8-complex forming RubisCO derived from ancestral sequence reconstruction of the last common ancestor of SSU-bearing Form I RubisCOs

Zarzycki, J., Schulz, L., Erb, T.J., Hochberg, G.K.A.

(2022) Science 378: 155-160

Released	2022-10-12
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	synthetic construct
Macromolecule	RubisCO large subunit (protein) RubisCO small subunit (protein)
Unique Ligands	CAP, MG

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7QSX \| pdb_00007qsx	Download File View File

Non-obligately L8S8-complex forming RubisCO derived from ancestral sequence reconstruction and rational engineering in L8 complex

Zarzycki, J., Schulz, L., Erb, T.J., Hochberg, G.K.A.

(2022) Science 378: 155-160

Released	2022-10-12
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	synthetic construct
Macromolecule	RubisCO large subunit (protein)
Unique Ligands	CAP, MG

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7QSY \| pdb_00007qsy	Download File View File

Non-obligately L8S8-complex forming RubisCO derived from ancestral sequence reconstruction and rational engineering in L8S8 complex

Zarzycki, J., Schulz, L., Erb, T.J., Hochberg, G.K.A.

(2022) Science 378: 155-160

Released	2022-10-12
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	synthetic construct
Macromolecule	RubisCO large subunit (protein) RubisCO small subunit (protein)
Unique Ligands	CAP, MG

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7QSZ \| pdb_00007qsz	Download File View File

Non-obligately L8S8-complex forming RubisCO derived from ancestral sequence reconstruction and rational engineering in L8 complex with substitution e170N

Zarzycki, J., Schulz, L., Erb, T.J., Hochberg, G.K.A.

(2022) Science 378: 155-160

Released	2022-10-12
Method	X-RAY DIFFRACTION 2.25 Å
Organisms	synthetic construct
Macromolecule	RubisCO large subunit (protein)
Unique Ligands	CAP, MG

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7QT1 \| pdb_00007qt1	Download File View File

Non-obligately L8S8-complex forming RubisCO derived from ancestral sequence reconstruction and rational engineering in L8S8 complex with substitution e170N

Zarzycki, J., Schulz, L., Erb, T.J., Hochberg, G.K.A.

(2022) Science 378: 155-160

Released	2022-10-12
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	synthetic construct
Macromolecule	RubisCO large subunit (protein) RubisCO small subunit (protein)
Unique Ligands	CAP, MG

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7QVI \| pdb_00007qvi	Download File View File

Fiber-forming RubisCO derived from ancestral sequence reconstruction and rational engineering

Schulz, L., Zarzycki, J., Prinz, S., Schuller, J.M., Erb, T.J., Hochberg, G.K.A.

(2022) Science 378: 155-160

Released	2022-10-12
Method	ELECTRON MICROSCOPY 3 Å
Organisms	synthetic construct
Macromolecule	RubisCO large subunit (protein)
Unique Ligands	CAP, MG

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8AG8 \| pdb_00008ag8	Download File View File

Structure of the Fluorescence Recovery-like protein FRPL from Pseudomonas borbori

Weiland, P., Bange, G.

(2023) Nat Ecol Evol 7: 756-767

Released	2023-04-05
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Pseudomonas borbori
Macromolecule	Fluorescence Recovery-like protein (protein)
Unique Ligands	NHE

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8AN1 \| pdb_00008an1	Download File View File

Structure of a first level Sierpinski triangle formed by a citrate synthase

Lo, Y.K., Bohn, S., Sendker, F.L., Schuller, J.M., Hochberg, G.

(2024) Nature 628: 894-900

Released	2024-02-21
Method	ELECTRON MICROSCOPY 3.93 Å
Organisms	Synechococcus elongatus PCC 7942 = FACHB-805
Macromolecule	Citrate synthase (protein)

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8BEI \| pdb_00008bei	Download File View File

Structure of hexameric subcomplexes (Truncation Delta2-6) of the fractal citrate synthase from Synechococcus elongatus PCC7942

Lo, Y.K., Bohn, S., Sendker, F.L., Schuller, J.M., Hochberg, G.

(2024) Nature 628: 894-900

Released	2024-02-28
Method	ELECTRON MICROSCOPY 3.06 Å
Organisms	Synechococcus elongatus PCC 7942 = FACHB-805
Macromolecule	Citrate synthase (protein)

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8BP7 \| pdb_00008bp7	Download File View File

Citrate-bound hexamer of Synechococcus elongatus citrate synthase

Mais, C.-N., Sendker, F., Bange, G.

(2024) Nature 628: 894-900

Released	2024-04-24
Method	X-RAY DIFFRACTION 2.71 Å
Organisms	Synechococcus elongatus PCC 7942 = FACHB-805
Macromolecule	Citrate synthase (protein)
Unique Ligands	CIT, MG, SO4

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8BW1 \| pdb_00008bw1	Download File View File

Yeast 20S proteasome in complex with an engineered fellutamide derivative (C14QAL)

Bozhueyuek, K.A.J., Praeve, L., Kegler, C., Kaiser, S., Shi, Y., Kuttenlochner, W., Schenk, L., Groll, M., Hochberg, G.K.A., Bode, H.B.

(2024) Science 383: eadg4320-eadg4320

Released	2023-12-20
Method	X-RAY DIFFRACTION 3.25 Å
Organisms	Saccharomyces cerevisiae synthetic construct
Macromolecule	Unique protein chains: 15
Unique Ligands	CL, MG, MYR

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8DHY \| pdb_00008dhy	Download File View File

N-terminal fragment of MsbA fused to GFP in complex with copper(II)

Schrecke, S.R., Zhang, T., Lyu, J., Laganowsky, A.

(2022) Nat Commun 13: 7291-7291

Released	2022-12-07
Method	X-RAY DIFFRACTION 2.15 Å
Organisms	Aequorea victoria Escherichia coli
Macromolecule	Fusion protein of MsbA N-terminal fragment and GFP,Green fluorescent protein (protein)
Unique Ligands	CU

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8DMM \| pdb_00008dmm	Download File View File

Structure of the vanadate-trapped MsbA bound to KDL

Liu, C., Lyu, J., Laganowsky, A.D., Zhao, M.

(2022) Nat Commun 13: 7291-7291

Released	2022-12-14
Method	ELECTRON MICROSCOPY 3.47 Å
Organisms	Escherichia coli
Macromolecule	ATP-binding transport protein MsbA (protein)
Unique Ligands	AOV, KDL

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8DMO \| pdb_00008dmo	Download File View File

Structure of open, inward-facing MsbA from E. coli

Liu, C., Lyu, J., Laganowsky, A.D., Zhao, M.

(2022) Nat Commun 13: 7291-7291

Released	2022-12-14
Method	ELECTRON MICROSCOPY 3.9 Å
Organisms	Escherichia coli
Macromolecule	ATP-binding transport protein MsbA (protein)

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8QMV \| pdb_00008qmv	Download File View File

L2 forming RubisCO derived from ancestral sequence reconstruction of the last common ancestor of Form I'' and Form I RubisCOs

Zarzycki, J., Schulz, L., Erb, T.J., Hochberg, G.K.A.

(2025) EMBO J 44: 269-280

Released	2024-10-16
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	synthetic construct
Macromolecule	RubisCO large subunit (protein)
Unique Ligands	CAP, MG

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8QMW \| pdb_00008qmw	Download File View File

Non-obligately L8S8-complex forming RubisCO derived from ancestral sequence reconstruction and rational engineering in L8S8 complex with substitutions R269W, E271R, L273N

Zarzycki, J., Schulz, L., Erb, T.J., Hochberg, G.K.A.

(2025) EMBO J 44: 269-280

Released	2024-10-02
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	synthetic construct
Macromolecule	RubisCO large subunit (protein) RubisCO small subunit (protein)
Unique Ligands	B3P, CAP, MG

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8QWB \| pdb_00008qwb	Download File View File

Crystal structure of citrate synthase from Methylophaga sulfidovorans

Mais, C.-N., Bange, G., Sendker, F.L., Hochberg, G.

(2024) bioRxiv

Released	2024-07-31
Method	X-RAY DIFFRACTION 3.201 Å
Organisms	Methylophaga sulfidovorans
Macromolecule	Citrate synthase (protein)

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8QZP \| pdb_00008qzp	Download File View File

Structure of the non-mitochondrial citrate synthase from Ananas comosus

Lo, Y.K., Bohn, S., Sendker, F.L., Schuller, J.M., Hochberg, G.

(2024) bioRxiv

Released	2024-07-24
Method	ELECTRON MICROSCOPY 4.15 Å
Organisms	Ananas comosus
Macromolecule	Citrate synthase (protein)

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8RC2 \| pdb_00008rc2	Download File View File

DNA bound type IV-A3 CRISPR effector complex from K. pneumoniae

Miksys, A., Cepaite, R., Malinauskaite, L., Pausch, P.

(2024) Nat Commun 15: 9306-9306

Released	2024-11-06
Method	ELECTRON MICROSCOPY 3.1 Å
Organisms	Klebsiella pneumoniae
Macromolecule	Unique protein chains: 3 Unique nucleic acid chains: 3
Unique Ligands	ZN

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8RC3 \| pdb_00008rc3	Download File View File

DNA bound type IV-A1 CRISPR effector complex from P. oleovorans

Miksys, A., Cepaite, R., Malinauskaite, L., Pausch, P.

(2024) Nat Commun 15: 9306-9306

Released	2024-11-06
Method	ELECTRON MICROSCOPY 3 Å
Organisms	Ectopseudomonas oleovorans
Macromolecule	Unique protein chains: 4 Unique nucleic acid chains: 3
Unique Ligands	ZN

1 to 25 of 32 Structures

Page 1 of 2

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

5DS1 | pdb_00005ds1

5DS2 | pdb_00005ds2

6RVV | pdb_00006rvv

6RVW | pdb_00006rvw

7QSV | pdb_00007qsv

7QSW | pdb_00007qsw

7QSX | pdb_00007qsx

7QSY | pdb_00007qsy

7QSZ | pdb_00007qsz

7QT1 | pdb_00007qt1

7QVI | pdb_00007qvi

8AG8 | pdb_00008ag8

8AN1 | pdb_00008an1

8BEI | pdb_00008bei

8BP7 | pdb_00008bp7

8BW1 | pdb_00008bw1

8DHY | pdb_00008dhy

8DMM | pdb_00008dmm

8DMO | pdb_00008dmo

8QMV | pdb_00008qmv

8QMW | pdb_00008qmw

8QWB | pdb_00008qwb

8QZP | pdb_00008qzp

8RC2 | pdb_00008rc2

8RC3 | pdb_00008rc3