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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Holliday, M.J."

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Search Summary

This query matches 17 Structures.

Refinements

Structure Determination Methodology

experimental (17)

Scientific Name of Source Organism

	Homo sapiens (16)
	Geobacillus kaustophilus HTA426 (1)

Taxonomy

	Eukaryota (16)
	Bacteria (1)

Experimental Method

	X-RAY DIFFRACTION (11)
	SOLUTION NMR (5)
	ELECTRON MICROSCOPY (1)

Polymer Entity Type

Protein (17)

Refinement Resolution (Å)

	1.0 - 1.5 (2)
	1.5 - 2.0 (6)
	2.0 - 2.5 (3)
	4.0 - 4.5 (1)

Release Date

	2015 - 2019 (7)
	2020 - 2024 (10)

Enzyme Classification Name

Isomerases (1)

Membrane Protein Annotation

OPM (2)

Symmetry Type

	Asymmetric (13)
	Cyclic (3)
	Helical (1)

SCOP Classification

All beta proteins (1)

AllSelected

1 to 17 of 17 Structures

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2MVZ \| pdb_00002mvz	Download File View File

Solution Structure for Cyclophilin A from Geobacillus Kaustophilus

Holliday, M.J., Isern, N.G., Geoffrey, A.S., Zhang, F., Eisenmesser, E.Z.

(2015) Biochemistry 54: 3207-3217

Released	2015-07-08
Method	SOLUTION NMR
Organisms	Geobacillus kaustophilus HTA426
Macromolecule	Peptidyl-prolyl cis-trans isomerase (protein)

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6E25 \| pdb_00006e25	Download File View File

NMR solution structure of the CARD9 CARD bound to zinc

Holliday, M.J., Dueber, E.C., Fairbrother, W.J.

(2018) J Biological Chem 293: 16803-16817

Released	2018-09-26
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Caspase recruitment domain-containing protein 9 (protein)
Unique Ligands	ZN

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6E26 \| pdb_00006e26	Download File View File

NMR solution structure of the CARD9 CARD

Holliday, M.J., Dueber, E.C., Fairbrother, W.J.

(2018) J Biological Chem 293: 16803-16817

Released	2018-09-26
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Caspase recruitment domain-containing protein 9 (protein)

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6E27 \| pdb_00006e27	Download File View File

The CARD9 CARD domain-swapped dimer with a zinc ion bound to one of the two zinc binding sites

Holliday, M.J., Ferrao, R., Boenig, G., Deuber, E.C., Fairbrother, W.J.

(2018) J Biological Chem 293: 16803-16817

Released	2018-09-26
Method	X-RAY DIFFRACTION 1.811 Å
Organisms	Homo sapiens
Macromolecule	Caspase recruitment domain-containing protein 9 (protein)
Unique Ligands	ZN

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6E28 \| pdb_00006e28	Download File View File

The CARD9 CARD domain-swapped dimer

Holliday, M.J., Ferrao, R., Boenig, G., Deuber, E.C., Fairbrother, W.J.

(2018) J Biological Chem 293: 16803-16817

Released	2018-09-26
Method	X-RAY DIFFRACTION 1.36 Å
Organisms	Homo sapiens
Macromolecule	Caspase recruitment domain-containing protein 9 (protein)

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6N2M \| pdb_00006n2m	Download File View File

NMR solution structure of the homodimeric, autoinhibited state of the CARD9 CARD and first coiled-coil

Holliday, M.J., Fairbrother, W.J., Dueber, E.C.

(2019) Nat Commun 10: 3070-3070

Released	2019-07-17
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Caspase recruitment domain-containing protein 9 (protein)
Unique Ligands	ZN

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6N2P \| pdb_00006n2p	Download File View File

Helical assembly of the CARD9 CARD

Holliday, M.J., Rohou, A., Arthur, C.P., Dueber, E.C., Fairbrother, W.J.

(2019) Nat Commun 10: 3070-3070

Released	2019-07-03
Method	ELECTRON MICROSCOPY 4 Å
Organisms	Homo sapiens
Macromolecule	Caspase recruitment domain-containing protein 9 (protein)

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6OXB \| pdb_00006oxb	Download File View File

First bromo-adjacent homology (BAH) domain of human Polybromo-1 (PBRM1)

Petojevic, T., Holliday, M.J., Fairbrother, W.J., Cochran, A.G.

To be published

Released	2020-05-20
Method	X-RAY DIFFRACTION 1.86 Å
Organisms	Homo sapiens
Macromolecule	Protein polybromo-1 (protein)
Unique Ligands	CL, SO4

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7L6K \| pdb_00007l6k	Download File View File

ApoL1 N-terminal domain

Holliday, M.J., Ultsch, M., Moran, P., Fairbrother, W.J., Kirchhofer, D.

(2021) Commun Biol 4: 916-916

Released	2021-08-04
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Apolipoprotein L1 (protein)

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7LF7 \| pdb_00007lf7	Download File View File

Fab 6D12 bound to ApoL1 NTD

Ultsch, M., Kirchhofer, D.

(2021) Commun Biol 4: 916-916

Released	2021-08-04
Method	X-RAY DIFFRACTION 2.026 Å
Organisms	Homo sapiens
Macromolecule	Apolipoprotein L1 (protein) Fab 6D12 heavy chain (protein) Fab 6D12 light chain (protein)
Unique Ligands	EOH, GOL

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7LF8 \| pdb_00007lf8	Download File View File

Fab 6D12 bound to ApoL2 NTD

Ultsch, M., Kirchhofer, D.

(2021) Commun Biol 4: 916-916

Released	2021-08-04
Method	X-RAY DIFFRACTION 2.15 Å
Organisms	Homo sapiens
Macromolecule	Apolipoprotein L2 (protein) Fab 6D12 heavy chain (protein) Fab 6D12 light chain (protein)
Unique Ligands	GOL, PO4

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7LFA \| pdb_00007lfa	Download File View File

Fab 3B6 bound to ApoL1 NTD

Ultsch, M., Kirchhofer, D.

(2021) Commun Biol 4: 916-916

Released	2021-08-04
Method	X-RAY DIFFRACTION 1.857 Å
Organisms	Homo sapiens
Macromolecule	Apolipoprotein L1 (protein) Fab 3B6 heavy chain (protein) Fab 3B6 light chain (protein)
Unique Ligands	CL, GOL

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7LFB \| pdb_00007lfb	Download File View File

Fab 7D6 bound to ApoL1 NTD

Ultsch, M., Kirchhofer, D.

(2021) Commun Biol 4: 916-916

Released	2021-08-04
Method	X-RAY DIFFRACTION 1.913 Å
Organisms	Homo sapiens
Macromolecule	Apolipoprotein L1 (protein) Fab 7D6 heavy chain (protein) Fab 7D6 light chain (protein)
Unique Ligands	GOL, MES, SO4

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7LFD \| pdb_00007lfd	Download File View File

Fab 7D6 bound to ApoL1 BH3 like peptide

Ultsch, M., Kirchhofer, D.

(2021) Commun Biol 4: 916-916

Released	2021-08-04
Method	X-RAY DIFFRACTION 2.157 Å
Organisms	Homo sapiens
Macromolecule	Apolipoprotein L1 BH3 like peptide (protein) Fab 7D6 heavy chain (protein) Fab 7D6 light chain (protein)
Unique Ligands	EOH, FLC, GOL, NH4

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7R9W \| pdb_00007r9w	Download File View File

LC3A in complex with Fragment 1-1

Rouge, L., Steffek, M., Helgason, E., Dueber, E., Mulvihill, M.

(2023) Biochemistry 62: 633-644

Released	2022-01-12
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Homo sapiens
Macromolecule	Microtubule-associated proteins 1A/1B light chain 3A (protein)
Unique Ligands	GOL, JO4

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7R9Z \| pdb_00007r9z	Download File View File

LC3A in complex with Fragment 2-3

Rouge, L., Steffek, M., Helgason, E., Dueber, E., Mulvihill, M.

(2023) Biochemistry 62: 633-644

Released	2022-01-12
Method	X-RAY DIFFRACTION 1.72 Å
Organisms	Homo sapiens
Macromolecule	Microtubule-associated proteins 1A/1B light chain 3A (protein)
Unique Ligands	2LZ

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7RA0 \| pdb_00007ra0	Download File View File

LC3A in complex with Fragment 2-10

Rouge, L., Steffek, M., Helgason, E., Dueber, E., Mulvihill, M.

(2023) Biochemistry 62: 633-644

Released	2022-01-12
Method	X-RAY DIFFRACTION 1.36 Å
Organisms	Homo sapiens
Macromolecule	Microtubule-associated proteins 1A/1B light chain 3A (protein)
Unique Ligands	2JI

1 to 17 of 17 Structures

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

2MVZ | pdb_00002mvz

Solution Structure for Cyclophilin A from Geobacillus Kaustophilus

6E25 | pdb_00006e25

NMR solution structure of the CARD9 CARD bound to zinc

6E26 | pdb_00006e26

NMR solution structure of the CARD9 CARD

6E27 | pdb_00006e27

The CARD9 CARD domain-swapped dimer with a zinc ion bound to one of the two zinc binding sites

6E28 | pdb_00006e28

The CARD9 CARD domain-swapped dimer

6N2M | pdb_00006n2m

NMR solution structure of the homodimeric, autoinhibited state of the CARD9 CARD and first coiled-coil

6N2P | pdb_00006n2p

Helical assembly of the CARD9 CARD

6OXB | pdb_00006oxb

First bromo-adjacent homology (BAH) domain of human Polybromo-1 (PBRM1)

7L6K | pdb_00007l6k

ApoL1 N-terminal domain

7LF7 | pdb_00007lf7

Fab 6D12 bound to ApoL1 NTD

7LF8 | pdb_00007lf8

Fab 6D12 bound to ApoL2 NTD

7LFA | pdb_00007lfa

Fab 3B6 bound to ApoL1 NTD

7LFB | pdb_00007lfb

Fab 7D6 bound to ApoL1 NTD

7LFD | pdb_00007lfd

Fab 7D6 bound to ApoL1 BH3 like peptide

7R9W | pdb_00007r9w

LC3A in complex with Fragment 1-1

7R9Z | pdb_00007r9z

LC3A in complex with Fragment 2-3

7RA0 | pdb_00007ra0

LC3A in complex with Fragment 2-10

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

2MVZ | pdb_00002mvz

6E25 | pdb_00006e25

6E26 | pdb_00006e26

6E27 | pdb_00006e27

6E28 | pdb_00006e28

6N2M | pdb_00006n2m

6N2P | pdb_00006n2p

6OXB | pdb_00006oxb

7L6K | pdb_00007l6k

7LF7 | pdb_00007lf7

7LF8 | pdb_00007lf8

7LFA | pdb_00007lfa

7LFB | pdb_00007lfb

7LFD | pdb_00007lfd

7R9W | pdb_00007r9w

7R9Z | pdb_00007r9z

7RA0 | pdb_00007ra0