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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Jones, D.N."

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Search Summary

This query matches 25 Structures.

Refinements

Structure Determination Methodology

experimental (25)

Scientific Name of Source Organism

	Drosophila melanogaster (9)
	Homo sapiens (9)
	Anopheles gambiae (3)
	Ascaris suum (2)
	Schistosoma mansoni (2)
	Anopheles gambiae str. PEST (1)
	Pseudomonas sp. A-01 (1)
	Pseudomonas sp. LL2(2010) (1)
	Thermococcus celer (1)

Taxonomy

	Eukaryota (22)
	Bacteria (2)
	Archaea (1)

Experimental Method

	X-RAY DIFFRACTION (23)
	SOLUTION NMR (2)

Polymer Entity Type

Protein (25)

Refinement Resolution (Å)

	1.0 - 1.5 (2)
	1.5 - 2.0 (7)
	2.0 - 2.5 (13)
	2.5 - 3.0 (1)

Release Date

	1990 - 1994 (1)
	1995 - 1999 (1)
	2005 - 2009 (10)
	2010 - 2014 (10)
	2015 - 2019 (1)
	2020 - 2024 (2)

Enzyme Classification Name

	Transferases (3)
	Hydrolases (2)

Symmetry Type

	Asymmetric (23)
	Cyclic (3)
	Dihedral (1)

SCOP Classification

	All alpha proteins (14)
	Alpha and beta proteins (a+b) (6)
	Artifacts (6)
	Small proteins (1)

AllSelected

1 to 25 of 25 Structures

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1HMA \| pdb_00001hma	Download File View File

THE SOLUTION STRUCTURE AND DYNAMICS OF THE DNA BINDING DOMAIN OF HMG-D FROM DROSOPHILA MELANOGASTER

Jones, D.N.M., Searles, M.A., Shaw, G.L., Churchill, M.E.A., Ner, S.S., Keeler, J., Travers, A.A., Neuhaus, D.

(1994) Structure 2: 609-627

Released	1994-07-31
Method	SOLUTION NMR
Organisms	Drosophila melanogaster
Macromolecule	HMG-D (protein)

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1QYP \| pdb_00001qyp	Download File View File

THERMOCOCCUS CELER RPB9, NMR, 25 STRUCTURES

Wang, B., Jones, D.N.M., Kaine, B.P., Weiss, M.A.

(1998) Structure 6: 555-569

Released	1997-12-24
Method	SOLUTION NMR
Organisms	Thermococcus celer
Macromolecule	RNA POLYMERASE II (protein)
Unique Ligands	ZN

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1T14 \| pdb_00001t14	Download File View File

Crystal structure of LUSH from Drosophila melanogaster: apo protein

Kruse, S.W., Jones, D.N.M.

(2008) J Mol Biology 376: 1360-1376

Released	2005-04-26
Method	X-RAY DIFFRACTION 1.86 Å
Organisms	Drosophila melanogaster
Macromolecule	lush (protein)
Unique Ligands	ACT

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2GTE \| pdb_00002gte	Download File View File

Drosophila OBP LUSH bound to attractant pheromone 11-cis-vaccenyl acetate

Laughlin, J.D., Ha, T., Smith, D.P., Jones, D.N.M.

(2008) Cell 133: 1255-1265

Released	2007-06-12
Method	X-RAY DIFFRACTION 1.4 Å
Organisms	Drosophila melanogaster
Macromolecule	General odorant-binding protein lush (protein)
Unique Ligands	PO4, VA

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2QDI \| pdb_00002qdi	Download File View File

Drosophila OBP LUSH D118A mutation

Laughlin, J.D., Jones, D.N.M.

(2008) Cell 133: 1255-1265

Released	2008-06-03
Method	X-RAY DIFFRACTION 2 Å
Organisms	Drosophila melanogaster
Macromolecule	General odorant-binding protein lush (protein)
Unique Ligands	PGE

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3B6X \| pdb_00003b6x	Download File View File

Complex of S52A Substituted Drosophila LUSH protein with Butanol

Thode, A.B., Jones, D.N.M.

(2008) J Mol Biology 376: 1360-1376

Released	2008-02-05
Method	X-RAY DIFFRACTION 2 Å
Organisms	Drosophila melanogaster
Macromolecule	General odorant-binding protein lush (protein)
Unique Ligands	1BO, ACT

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3B7A \| pdb_00003b7a	Download File View File

Complex of S52A Substituted Droposphila LUSH protein with Ethanol

Jones, D.N.M., Thode, A.B.

(2008) J Mol Biology 376: 1360-1376

Released	2008-02-05
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Drosophila melanogaster
Macromolecule	General odorant-binding protein lush (protein)
Unique Ligands	ACT, EOH

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3B86 \| pdb_00003b86	Download File View File

Crystal structure of T57S substituted LUSH protein complexed with ethanol

Jones, D.N.M., Thode, A.B.

(2008) J Mol Biology 376: 1360-1376

Released	2008-02-05
Method	X-RAY DIFFRACTION 2 Å
Organisms	Drosophila melanogaster
Macromolecule	General odorant-binding protein lush (protein)
Unique Ligands	ACT, EOH, PG4

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3B87 \| pdb_00003b87	Download File View File

Complex of T57A Substituted Droposphila LUSH protein with Butanol

Jones, D.N.M., Thode, A.B.

(2008) J Mol Biology 376: 1360-1376

Released	2008-02-05
Method	X-RAY DIFFRACTION 2 Å
Organisms	Drosophila melanogaster
Macromolecule	General odorant-binding protein lush (protein)
Unique Ligands	ACT, PE8

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3B88 \| pdb_00003b88	Download File View File

Complex of T57A Substituted Drosophila LUSH Protein with Ethanol

Jones, D.N.M., Thode, A.B.

(2008) J Mol Biology 376: 1360-1376

Released	2008-02-05
Method	X-RAY DIFFRACTION 2 Å
Organisms	Drosophila melanogaster
Macromolecule	General odorant-binding protein lush (protein)
Unique Ligands	ACT, ETE

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3HXG \| pdb_00003hxg	Download File View File

Crystal structure of Schistsome eIF4E complexed with m7GpppA and 4E-BP

Liu, W., Zhao, R., Jones, D.N.M., Davis, R.E.

(2009) J Biological Chem 284: 31336-31349

Released	2009-08-25
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens Schistosoma mansoni
Macromolecule	Eukaryotic Translation Initiation Factor 4E (protein) Eukaryotic translation initiation factor 4E-binding protein 1 (protein)
Unique Ligands	GTA

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3HXI \| pdb_00003hxi	Download File View File

Crystal structure of Schistosome eIF4E complexed with m7GpppG and 4E-BP

Liu, W., Zhao, R., Jones, D.N.M., Davis, R.E.

(2009) J Biological Chem 284: 31336-31349

Released	2009-08-25
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Homo sapiens Schistosoma mansoni
Macromolecule	Eukaryotic Translation Initiation 4E (protein) Eukaryotic translation initiation factor 4E-binding protein 1 (protein)
Unique Ligands	GTG

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3M93 \| pdb_00003m93	Download File View File

Complex crystal structure of Ascaris suum eIF4E-3 with m7G cap

Liu, W., Berkeley Structural Genomics Center (BSGC)

(2011) Nucleic Acids Res 39: 8820-8832

Released	2011-07-20
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Ascaris suum Homo sapiens
Macromolecule	Eukaryotic translation initiation factor 4E-binding protein 1 (protein) Translation initiation factor 4E (protein)
Unique Ligands	M7G

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3M94 \| pdb_00003m94	Download File View File

Complex crystal structure of Ascaris suum eIF4E-3 with m2,2,7G cap

Liu, W., Berkeley Structural Genomics Center (BSGC)

(2011) Nucleic Acids Res 39: 8820-8832

Released	2011-07-20
Method	X-RAY DIFFRACTION 2.05 Å
Organisms	Ascaris suum Homo sapiens
Macromolecule	Eukaryotic translation initiation factor 4E-binding protein 1 (protein) Translation initiation factor 4E (protein)
Unique Ligands	ACE, M7M

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3QQN \| pdb_00003qqn	Download File View File

The retinal specific CD147 Ig0 domain: from molecular structure to biological activity

Redzic, J.S., Armstrong, G.S., Isern, N.G., Kieft, J.S., Eisenmesser, E.Z., Berkeley Structural Genomics Center (BSGC)

(2011) J Mol Biology 411: 68-82

Released	2011-05-11
Method	X-RAY DIFFRACTION 2.309 Å
Organisms	Homo sapiens
Macromolecule	Basigin (protein)

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3QR2 \| pdb_00003qr2	Download File View File

Wild type CD147 Ig0 domain

Redzic, J.S., Armstrong, G.S., Isern, N.G., Kieft, J.S., Eisenmesser, E.Z., Berkeley Structural Genomics Center (BSGC)

(2011) J Mol Biology 411: 68-82

Released	2011-05-11
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Homo sapiens
Macromolecule	Basigin (protein)

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3V2L \| pdb_00003v2l	Download File View File

Structure of Anopheles gambiae odorant binding protein 20 bound to polyethylene glycol

Ziemba, B.P., Jones, D.N.

(2013) Protein Sci 22: 11-21

Released	2012-10-17
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Anopheles gambiae
Macromolecule	AGAP005208-PA (protein)
Unique Ligands	PG4

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3VB1 \| pdb_00003vb1	Download File View File

Crystal Structure of Anopholes gambiae odorant binding protein 20 in open state

Ziemba, B.P., Jones, D.N.

(2013) Protein Sci 22: 11-21

Released	2012-10-17
Method	X-RAY DIFFRACTION 2 Å
Organisms	Anopheles gambiae
Macromolecule	AGAP005208-PA (protein)
Unique Ligands	ACY

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4F7F \| pdb_00004f7f	Download File View File

Structure of Anopheles gambiae odorant binding protein 20

Jones, D.N., Ziemba, B.P.

(2013) Protein Sci 22: 11-21

Released	2012-10-17
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Anopheles gambiae
Macromolecule	AGAP005208-PA (protein)
Unique Ligands	2PE, PG6

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4FQT \| pdb_00004fqt	Download File View File

Structure of AgamOBP1 Bound to 6-methyl-5-hepten-2-one

Murphy, E.J., Booth, J.C.

(2013) J Biological Chem 288: 4475-4485

Released	2013-01-02
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Anopheles gambiae str. PEST
Macromolecule	Anopheles Gambiae Odorant Binding protein 1 (protein)
Unique Ligands	0VT, PG4

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4OLT \| pdb_00004olt	Download File View File

Chitosanase complex structure

Liu, W.Z., Lyu, Q.Q., Han, B.Q.

(2014) Biochem J 461: 335-345

Released	2014-04-30
Method	X-RAY DIFFRACTION 1.59 Å
Organisms	Pseudomonas sp. LL2(2010)
Macromolecule	Chitosanase (protein)
Unique Ligands	GOL
Unique branched monosaccharides	GCS

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4OUF \| pdb_00004ouf	Download File View File

Crystal Structure of CBP bromodomain

Roy, S., Das, C., Tyler, J.K., Kutateladze, T.G.

(2014) Proc Natl Acad Sci U S A 111: E1072-E1081

Released	2014-03-12
Method	X-RAY DIFFRACTION 1.4 Å
Organisms	Homo sapiens
Macromolecule	CREB-binding protein (protein)
Unique Ligands	EDO, PEG

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4QWP \| pdb_00004qwp	Download File View File

co-crystal structure of chitosanase OU01 with substrate

Lyu, Q., Liu, W., Han, B.

(2015) Biochim Biophys Acta 1850: 1953-1961

Released	2015-07-22
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Pseudomonas sp. A-01
Macromolecule	Chitosanase (protein)
Unique Ligands	ACT, GOL
Unique branched monosaccharides	GCS