RCSB PDB: Search

1Q7G \| pdb_00001q7g	Download File View File

Homoserine Dehydrogenase in complex with suicide inhibitor complex NAD-5-hydroxy-4-Oxonorvaline

Jacques, S.L., Mirza, I.A., Ejim, L., Koteva, K., Hughes, D.W., Green, K., Kinach, R., Honek, J.F., Lai, H.K., Berghuis, A.M., Wright, G.D.

(2003) Chem Biol 10: 989-995

Released	2003-10-21
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	Homoserine dehydrogenase (protein)
Unique Ligands	NA, NHO

Explore in 3D

2HW2 \| pdb_00002hw2	Download File View File

Crystal structure of Rifampin ADP-ribosyl transferase in complex with Rifampin

Baysarowich, J., Wright, G.D., Junop, M.

(2008) Proc Natl Acad Sci U S A 105: 4886-4891

Released	2007-07-31
Method	X-RAY DIFFRACTION 1.45 Å
Organisms	Mycolicibacterium smegmatis
Macromolecule	Rifampin ADP-ribosyl transferase (protein)
Unique Ligands	GLY, RFP

Explore in 3D

5FBS \| pdb_00005fbs	Download File View File

Crystal structure of rifampin phosphotransferase RPH-Lm from Listeria monocytogenes in complex with ADP and magnesium

Stogios, P.J., Wawrzak, Z., Skarina, T., Yim, V., Savchenko, A., Anderson, W.F., Center for Structural Genomics of Infectious Diseases (CSGID)

(2016) Nat Commun 7: 11343-11343

Released	2016-01-13
Method	X-RAY DIFFRACTION 2.59 Å
Organisms	Listeria monocytogenes serotype 4b str. F2365
Macromolecule	Phosphoenolpyruvate synthase (protein)
Unique Ligands	ADP, MG

Explore in 3D

5FBT \| pdb_00005fbt	Download File View File

Crystal structure of rifampin phosphotransferase RPH-Lm from Listeria monocytogenes in complex with rifampin

Stogios, P.J., Wawrzak, Z., Skarina, T., Yim, V., Savchenko, A., Anderson, W.F., Center for Structural Genomics of Infectious Diseases (CSGID)

(2016) Nat Commun 7: 11343-11343

Released	2015-12-30
Method	X-RAY DIFFRACTION 2.702 Å
Organisms	Listeria monocytogenes serotype 4b str. F2365
Macromolecule	Phosphoenolpyruvate synthase (protein)
Unique Ligands	5WQ, CL

Explore in 3D

5FBU \| pdb_00005fbu	Download File View File

Crystal structure of rifampin phosphotransferase RPH-Lm from Listeria monocytogenes in complex with rifampin-phosphate

Stogios, P.J., Wawrzak, Z., Skarina, T., Yim, V., Savchenko, A., Anderson, W.F., Center for Structural Genomics of Infectious Diseases (CSGID)

(2016) Nat Commun 7: 11343-11343

Released	2015-12-30
Method	X-RAY DIFFRACTION 2.85 Å
Organisms	Listeria monocytogenes serotype 4b str. F2365
Macromolecule	Phosphoenolpyruvate synthase (protein)
Unique Ligands	5WP, CL, MPD

Explore in 3D

5US1 \| pdb_00005us1	Download File View File

Crystal structure of aminoglycoside acetyltransferase AAC(2')-Ia in complex with N2'-acetylgentamicin C1A and coenzyme A

Stogios, P.J., Evdokimova, E., Xu, Z., Wawrzak, Z., Savchenko, A., Anderson, W.F., Center for Structural Genomics of Infectious Diseases (CSGID)

(2018) ACS Infect Dis 4: 980-987

Released	2017-03-15
Method	X-RAY DIFFRACTION 2.48 Å
Organisms	Providencia stuartii
Macromolecule	Aminoglycoside 2'-N-acetyltransferase (protein)
Unique Ligands	8MM, ACO, COA, GOL, TAR

Explore in 3D

5UXA \| pdb_00005uxa	Download File View File

Crystal structure of macrolide 2'-phosphotransferase MphB from Escherichia coli

Stogios, P.J., Evdokimova, E., Egorova, O., Di Leo, R., Yim, V., Savchenko, A., Anderson, W.F., Center for Structural Genomics of Infectious Diseases (CSGID)

(2018) Nat Commun 9: 112-112

Released	2017-06-28
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Escherichia coli
Macromolecule	Macrolide 2'-phosphotransferase II (protein)
Unique Ligands	CA

Explore in 3D

5UXB \| pdb_00005uxb	Download File View File

Crystal structure of macrolide 2'-phosphotransferase MphH from Brachybacterium faecium, apoenzyme

Stogios, P.J., Skarina, T., Yim, V., Savchenko, A., Anderson, W.F., Center for Structural Genomics of Infectious Diseases (CSGID)

(2018) Nat Commun 9: 112-112

Released	2017-07-26
Method	X-RAY DIFFRACTION 2.794 Å
Organisms	Brachybacterium faecium DSM 4810
Macromolecule	Macrolide 2'-phosphotransferase MphH (protein)
Unique Ligands	CL

Explore in 3D

5UXC \| pdb_00005uxc	Download File View File

Crystal structure of macrolide 2'-phosphotransferase MphH from Brachybacterium faecium in complex with GDP

Stogios, P.J., Skarina, T., Wawrzak, Z., Yim, V., Savchenko, A., Anderson, W.F., Center for Structural Genomics of Infectious Diseases (CSGID)

(2018) Nat Commun 9: 112-112

Released	2017-08-16
Method	X-RAY DIFFRACTION 1.72 Å
Organisms	Brachybacterium faecium DSM 4810
Macromolecule	Predicted aminoglycoside phosphotransferase (protein)
Unique Ligands	CL, GDP, GOL, MG, PGE, PO4, SO4, ZIT

Explore in 3D

5UXD \| pdb_00005uxd	Download File View File

Crystal structure of macrolide 2'-phosphotransferase MphH from Brachybacterium faecium in complex with azithromycin

Stogios, P.J., Skarina, T., Wawrzak, Z., Yim, V., Savchenko, A., Anderson, W.F., Center for Structural Genomics of Infectious Diseases (CSGID)

(2018) Nat Commun 9: 112-112

Released	2017-08-23
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Brachybacterium faecium DSM 4810
Macromolecule	Macrolide 2'-phosphotransferase MphH (protein)
Unique Ligands	CL, SO4, ZIT

Explore in 3D

5VQB \| pdb_00005vqb	Download File View File

Crystal structure of rifampin monooxygenase from Streptomyces venezuelae, complex with FAD

Cox, G., Kelso, J., Stogios, P.J., Savchenko, A., Anderson, W.F., Wright, G.D., Center for Structural Genomics of Infectious Diseases (CSGID)

(2018) Cell Chem Biol 25: 403-412.e5

Released	2017-08-16
Method	X-RAY DIFFRACTION 3.391 Å
Organisms	Streptomyces venezuelae ATCC 10712
Macromolecule	Rifampin monooxygenase (protein)
Unique Ligands	CL, FAD, GOL

Explore in 3D

6BRD \| pdb_00006brd	Download File View File

Crystal structure of rifampin monooxygenase from Streptomyces venezuelae, complexed with rifampin and FAD

Cox, G., Kelso, J., Stogios, P.J., Savchenko, A., Anderson, W.F., Wright, G.D., Center for Structural Genomics of Infectious Diseases (CSGID)

(2018) Cell Chem Biol 25: 403-412.e5

Released	2017-12-13
Method	X-RAY DIFFRACTION 3.32 Å
Organisms	Streptomyces venezuelae ATCC 10712
Macromolecule	Rifampin monooxygenase (protein)
Unique Ligands	CL, FAD, MG, RFP

Explore in 3D

6CD7 \| pdb_00006cd7	Download File View File

Crystal structure of APH(2")-IVa in complex with plazomicin

Stogios, P.J., Evdokimova, E., Dong, A., Di Leo, R., Savchenko, A., Satchell, K.J., Joachimiak, J., Center for Structural Genomics of Infectious Diseases (CSGID)

(2018) ACS Infect Dis 4: 980-987

Released	2018-02-28
Method	X-RAY DIFFRACTION 1.53 Å
Organisms	Enterococcus casseliflavus
Macromolecule	APH(2'')-Id (protein)
Unique Ligands	CL, EDS

Explore in 3D

7UUK \| pdb_00007uuk	Download File View File

Crystal structure of aminoglycoside resistance enzyme ApmA, complex with tobramycin

Stogios, P.J., Evdokimova, E., Di Leo, R., Bordeleau, E., Wright, G.D., Savchenko, A., Joachimiak, A., Satchell, K.J.F., Center for Structural Biology of Infectious Diseases (CSBID)

(2024) Nat Chem Biol 20: 234-242

Released	2023-04-19
Method	X-RAY DIFFRACTION 2.82 Å
Organisms	Staphylococcus aureus
Macromolecule	Aminocyclitol acetyltransferase ApmA (protein)
Unique Ligands	CL, TOY

Explore in 3D

7UUL \| pdb_00007uul	Download File View File

Crystal structure of aminoglycoside resistance enzyme ApmA, complex with kanamycin B and coenzyme A

Stogios, P.J., Evdokimova, E., Di Leo, R., Bordeleau, E., Wright, G.D., Savchenko, A., Joachimiak, A., Satchell, K.J.F., Center for Structural Genomics of Infectious Diseases (CSGID), Center for Structural Biology of Infectious Diseases (CSBID)

(2024) Nat Chem Biol 20: 234-242

Released	2022-11-02
Method	X-RAY DIFFRACTION 2.26 Å
Organisms	Staphylococcus aureus
Macromolecule	Aminocyclitol acetyltransferase ApmA (protein)
Unique Ligands	9CS, CL, COA, EDO, SO4

Explore in 3D

7UUM \| pdb_00007uum	Download File View File

Crystal structure of aminoglycoside resistance enzyme ApmA, complex with paromomycin and coenzyme A

Stogios, P.J., Evdokimova, E., Osipiuk, J., Di Leo, R., Bordeleau, E., Wright, G.D., Savchenko, A., Joachimiak, A., Satchell, K.J.F., Center for Structural Genomics of Infectious Diseases (CSGID), Center for Structural Biology of Infectious Diseases (CSBID)

(2024) Nat Chem Biol 20: 234-242

Released	2022-11-02
Method	X-RAY DIFFRACTION 2.74 Å
Organisms	Staphylococcus aureus
Macromolecule	Aminocyclitol acetyltransferase ApmA (protein)
Unique Ligands	COA, GOL, PAR

Explore in 3D

7UUN \| pdb_00007uun	Download File View File

Crystal structure of aminoglycoside resistance enzyme ApmA, complex with neomycin

Stogios, P.J., Evdokimova, E., Di Leo, R., Osipiuk, J., Bordeleau, E., Wright, G.D., Savchenko, A., Joachimiak, A., Satchell, K.J.F., Center for Structural Genomics of Infectious Diseases (CSGID), Center for Structural Biology of Infectious Diseases (CSBID)

(2024) Nat Chem Biol 20: 234-242

Released	2022-11-02
Method	X-RAY DIFFRACTION 2.83 Å
Organisms	Staphylococcus aureus
Macromolecule	Aminocyclitol acetyltransferase ApmA (protein)
Unique Ligands	EDO, NMY

Explore in 3D

7UUO \| pdb_00007uuo	Download File View File

Crystal structure of aminoglycoside resistance enzyme ApmA H135A mutant, complex with tobramycin and coenzyme A

Stogios, P.J., Evdokimova, E., Michalska, K., Di Leo, R., Bordeleau, E., Wright, G.D., Savchenko, A., Joachimiak, A., Satchell, K.J.F., Center for Structural Genomics of Infectious Diseases (CSGID), Center for Structural Biology of Infectious Diseases (CSBID)

(2024) Nat Chem Biol 20: 234-242

Released	2022-11-02
Method	X-RAY DIFFRACTION 2.65 Å
Organisms	Staphylococcus aureus
Macromolecule	Aminocyclitol acetyltransferase ApmA (protein)
Unique Ligands	COA, EDO, TOY

Explore in 3D

8B43 \| pdb_00008b43	Download File View File

Crystal structure of ferrioxamine transporter

Josts, I., Tidow, H.

(2023) Proc Natl Acad Sci U S A 120: e2221253120-e2221253120

Released	2023-04-26
Method	X-RAY DIFFRACTION 2.49 Å
Organisms	Pseudomonas aeruginosa
Macromolecule	Ferrichrome-iron receptor (protein)
Unique Ligands	BOG, FE, OX8, SO4

Explore in 3D

8SPM \| pdb_00008spm	Download File View File

Crystal structure of NikA in complex Ni-AMA

Sychantha, D., Prehna, G., Wright, G.D.

(2024) Nat Commun 15: 4036-4036

Released	2024-04-10
Method	X-RAY DIFFRACTION 2.15 Å
Organisms	Escherichia coli
Macromolecule	Nickel ABC transporter, nickel/metallophore periplasmic binding protein (protein)
Unique Ligands	II1, NI

Explore in 3D

9DFC \| pdb_00009dfc	Download File View File

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with lasso peptide lariocidin, mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.50A resolution

Aleksandrova, E.V., Travin, D.Y., Jangra, M., Kaur, M., Darwish, L., Koteva, K., Klepacki, D., Wang, W., Tiffany, M., Sokaribo, A., Coombes, B.K., Vazquez-Laslop, N., Wright, G.D., Mankin, A.S., Polikanov, Y.S.

(2024) Res Sq

Released	2024-11-20
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Escherichia coli Paenibacillus Tequatrovirus T4 Thermus thermophilus HB8
Macromolecule	Unique protein chains: 50 Unique nucleic acid chains: 7
Unique Ligands	K, MG, SF4, ZN

Explore in 3D

9DFD \| pdb_00009dfd	Download File View File

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with lasso peptide lariocidin B, mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.60A resolution

Aleksandrova, E.V., Travin, D.Y., Jangra, M., Kaur, M., Darwish, L., Koteva, K., Klepacki, D., Wang, W., Tiffany, M., Sokaribo, A., Coombes, B.K., Vazquez-Laslop, N., Wright, G.D., Mankin, A.S., Polikanov, Y.S.

(2024) Res Sq

Released	2024-11-20
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Escherichia coli Paenibacillus Tequatrovirus T4 Thermus thermophilus HB8
Macromolecule	Unique protein chains: 50 Unique nucleic acid chains: 7
Unique Ligands	K, MG, SF4, ZN

Explore in 3D

9DFE \| pdb_00009dfe	Download File View File

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with lasso peptide lariocidin and protein Y at 2.60A resolution

Aleksandrova, E.V., Travin, D.Y., Jangra, M., Kaur, M., Darwish, L., Koteva, K., Klepacki, D., Wang, W., Tiffany, M., Sokaribo, A., Coombes, B.K., Vazquez-Laslop, N., Wright, G.D., Mankin, A.S., Polikanov, Y.S.

(2024) Res Sq

Released	2024-11-20
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Escherichia coli K-12 Paenibacillus Thermus thermophilus HB8
Macromolecule	Unique protein chains: 51 Unique nucleic acid chains: 3
Unique Ligands	ARG, MG, MPD, SF4, ZN

Explore in 3D

9DZU \| pdb_00009dzu	Download File View File

Cryo-EM structure of the C. neoformans lipid flippase Apt1-Cdc50 bound with butyrolactol A in the E2P state

Duan, H.D., Li, H.

(2025) bioRxiv

Released	2025-02-05
Method	ELECTRON MICROSCOPY 2.72 Å
Organisms	Cryptococcus neoformans var. grubii H99
Macromolecule	Phospholipid-transporting ATPase (protein) Transcription regulator (protein)
Unique Ligands	A1BD6, BEF, MG, NAG
Unique branched monosaccharides	BMA, MAN, NAG

Explore in 3D

9DZV \| pdb_00009dzv	Download File View File

Cryo-EM structure of the C. neoformans lipid flippase Apt1-Cdc50 in the E1 state

Duan, H.D., Li, H.

(2025) bioRxiv

Released	2025-02-05
Method	ELECTRON MICROSCOPY 3.27 Å
Organisms	Cryptococcus neoformans var. grubii H99
Macromolecule	Phospholipid-transporting ATPase (protein) Transcription regulator (protein)
Unique Ligands	MG, NAG
Unique branched monosaccharides	BMA, MAN, NAG

Prepare Data

Validate Data

Deposit Data

Help and Resources

Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1Q7G | pdb_00001q7g

2HW2 | pdb_00002hw2

5FBS | pdb_00005fbs

5FBT | pdb_00005fbt

5FBU | pdb_00005fbu

5US1 | pdb_00005us1

5UXA | pdb_00005uxa

5UXB | pdb_00005uxb

5UXC | pdb_00005uxc

5UXD | pdb_00005uxd

5VQB | pdb_00005vqb

6BRD | pdb_00006brd

6CD7 | pdb_00006cd7

7UUK | pdb_00007uuk

7UUL | pdb_00007uul

7UUM | pdb_00007uum

7UUN | pdb_00007uun

7UUO | pdb_00007uuo

8B43 | pdb_00008b43

8SPM | pdb_00008spm

9DFC | pdb_00009dfc

9DFD | pdb_00009dfd

9DFE | pdb_00009dfe

9DZU | pdb_00009dzu

9DZV | pdb_00009dzv