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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Kumar, N."

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Search Summary

This query matches 106 Structures.

Refinements

Structure Determination Methodology

experimental (106)

Scientific Name of Source Organism

	Homo sapiens (17)
	Pseudomonas fluorescens (11)
	Haemophilus influenzae Rd KW20 (10)
	Mycobacterium tuberculosis H37Rv (10)
	Mycolicibacterium smegmatis MC2 155 (9)
	Escherichia coli (7)
	Plasmodium falciparum Palo Alto/Uganda (7)
	Enterobacteria phage P4 (6)
	Severe acute respiratory syndrome coronavirus 2 (5)
	Campylobacter jejuni (3)

More...

Taxonomy

	Bacteria (70)
	Eukaryota (32)
	Duplodnaviria (6)
	Riboviria (5)
	other sequences (1)

Experimental Method

	X-RAY DIFFRACTION (75)
	ELECTRON MICROSCOPY (31)

Polymer Entity Type

	Protein (106)
	RNA (11)

Refinement Resolution (Å)

	1.0 - 1.5 (12)
	1.5 - 2.0 (20)
	2.0 - 2.5 (22)
	2.5 - 3.0 (18)
	3.0 - 3.5 (11)
	3.5 - 4.0 (17)
	4.0 - 4.5 (3)
	> 4.5 (3)

Release Date

	2000 - 2004 (1)
	2005 - 2009 (1)
	2010 - 2014 (10)
	2015 - 2019 (17)
	2020 - 2024 (76)
	2025 - 2029 (1)

Enzyme Classification Name

	Transferases (15)
	Hydrolases (14)
	Ligases (9)
	Oxidoreductases (4)
	Isomerases (1)

Membrane Protein Annotation

	MemProtMD (7)
	OPM (7)
	PDBTM (7)
	mpstruc (6)

Symmetry Type

	Asymmetric (51)
	Cyclic (50)
	Dihedral (4)
	Helical (1)

SCOP Classification

	All beta proteins (7)
	Alpha and beta proteins (a+b) (13)
	Artifacts (3)
	All alpha proteins (3)
	Alpha and beta proteins (a/b) (3)

AllSelected

1 to 25 of 106 Structures

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1N81 \| pdb_00001n81	Download File View File

Crystal structure of Pfg27 from Plasmodium falciparum

Sharma, A., Sharma, I., Kogkasuriyachai, D., Kumar, N.

(2003) Nat Struct Biol 10: 197-203

Released	2003-03-04
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Plasmodium falciparum 3D7
Macromolecule	plasmodium falciparum gamete antigen 27/25 (protein)

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3FOQ \| pdb_00003foq	Download File View File

Crystal structure of N-acetylglucosamine-1-phosphate uridyltransferase (GlmU) from Mycobacterium tuberculosis in a cubic space group.

Verma, S.K., Prakash, B.

(2009) Acta Crystallogr Sect F Struct Biol Cryst Commun 65: 435-439

Released	2009-06-09
Method	X-RAY DIFFRACTION 3.41 Å
Organisms	Mycobacterium tuberculosis
Macromolecule	Bifunctional protein glmU (protein)
Unique Ligands	SO4

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4HZC \| pdb_00004hzc	Download File View File

Crystal structure of Serine acetyltransferase from Brucella abortus strain S19

Kumar, S., Samudrala, G.

(2014) Biochim Biophys Acta 1844: 1741-1748

Released	2014-02-19
Method	X-RAY DIFFRACTION 1.97 Å
Organisms	Brucella abortus S19
Macromolecule	CysE, serine acetyltransferase (protein)
Unique Ligands	15P, CL, MG, TRS

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4HZD \| pdb_00004hzd	Download File View File

Crystal structure of Serine acetyltransferase in complex with Coenzyme A from Brucella abortus strain S19

Kumar, S., Samudrala, G.

(2014) Biochim Biophys Acta 1844: 1741-1748

Released	2014-02-19
Method	X-RAY DIFFRACTION 1.87 Å
Organisms	Brucella abortus S19
Macromolecule	CysE, serine acetyltransferase (protein)
Unique Ligands	15P, COA, MG

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4JUE \| pdb_00004jue	Download File View File

Crystal structure of Plasmodium falciparum ubiquitin conjugating enzyme UBC9

Reiter, K.H., Boucher, L.E., Bosch, J., Matunis, J.M.

(2013) J Biological Chem 288: 27724-27736

Released	2013-08-21
Method	X-RAY DIFFRACTION 1.851 Å
Organisms	Plasmodium falciparum 3D7
Macromolecule	Ubiquitin conjugating enzyme UBC9 (protein)

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4LIZ \| pdb_00004liz	Download File View File

Crystal structure of coactosin from Entamoeba histolytica

Gourinath, S., Kumar, N.

(2014) PLoS Pathog 10: e1004362-e1004362

Released	2014-07-23
Method	X-RAY DIFFRACTION 1.499 Å
Organisms	Entamoeba histolytica HM-1:IMSS-A
Macromolecule	Actin-binding protein, cofilin/tropomyosin family protein, putative (protein)
Unique Ligands	EPE, NA

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4M1N \| pdb_00004m1n	Download File View File

Crystal structure of Plasmodium falciparum ubiquitin conjugating enzyme UBC9

Boucher, L.E., Reiter, K.H., Bosch, J., Matunis, J.M.

(2013) J Biological Chem 288: 27724-27736

Released	2013-08-21
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Plasmodium falciparum 3D7
Macromolecule	Ubiquitin conjugating enzyme UBC9 (protein)
Unique Ligands	NA

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4MT0 \| pdb_00004mt0	Download File View File

Crystal Structure of the Open State of the Neisseria gonorrhoeae MtrE Outer Membrane Channel

Su, C.-C., Bolla, J.R., Yu, E.W.

(2014) PLoS One 9: e97475-e97475

Released	2014-08-06
Method	X-RAY DIFFRACTION 3.292 Å
Organisms	Neisseria gonorrhoeae
Macromolecule	MtrE protein (protein)
Unique Ligands	SO4

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4MT1 \| pdb_00004mt1	Download File View File

Crystal Structure of the Neisseria gonorrhoeae MtrD Inner Membrane Multidrug Efflux Pump

Su, C.-C., Bolla, J.R., Yu, E.W.

(2014) PLoS One 9: e97475-e97475

Released	2014-08-06
Method	X-RAY DIFFRACTION 3.54 Å
Organisms	Neisseria gonorrhoeae PID332
Macromolecule	Drug efflux protein (protein)

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4MT4 \| pdb_00004mt4	Download File View File

Crystal structure of the Campylobacter jejuni CmeC outer membrane channel

Su, C.-C., Yu, E.W.

(2014) Protein Sci 23: 954-961

Released	2014-09-24
Method	X-RAY DIFFRACTION 2.373 Å
Organisms	Campylobacter jejuni
Macromolecule	CmeC (protein)
Unique Ligands	3PK, C8E, SO4

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4NB5 \| pdb_00004nb5	Download File View File

Crystal Structure of a transcriptional regulator

Su, C.-C., Radhakrishnan, A., Yu, E.W.

(2014) J Biological Chem 289: 16526-16540

Released	2014-04-23
Method	X-RAY DIFFRACTION 1.641 Å
Organisms	Mycobacterium tuberculosis H37Rv
Macromolecule	DNA binding protein (protein)
Unique Ligands	2JT

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4NN1 \| pdb_00004nn1	Download File View File

Crystal Structure of transcriptional regulator Rv1219c of Mycobacterium tuberculosis

Kumar, N., Radhakrishnan, A., Chou, T.-H., Yu, E.

(2014) Protein Sci 23: 423-432

Released	2014-02-19
Method	X-RAY DIFFRACTION 2.99 Å
Organisms	Mycobacterium tuberculosis H37Rv
Macromolecule	Transcriptional regulator (protein)

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4R0C \| pdb_00004r0c	Download File View File

Crystal structure of the Alcanivorax borkumensis YdaH transporter reveals an unusual topology

Su, C.-C., Bolla, J.R., Yu, E.W.

(2015) Nat Commun 6: 6874-6874

Released	2015-04-29
Method	X-RAY DIFFRACTION 2.963 Å
Organisms	Alcanivorax borkumensis SK2
Macromolecule	AbgT putative transporter family (protein)
Unique Ligands	BOG, LMT, NA

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4R1I \| pdb_00004r1i	Download File View File

Structure and Function of Neisseria gonorrhoeae MtrF Illuminates a Class of Antimetabolite Efflux Pumps

Su, C.-C., Bolla, J.R., Yu, E.W.

(2015) Cell Rep 11: 61-70

Released	2015-04-08
Method	X-RAY DIFFRACTION 3.959 Å
Organisms	Neisseria gonorrhoeae FA19
Macromolecule	Aminobenzoyl-glutamate transporter (protein)

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5D18 \| pdb_00005d18	Download File View File

Crystal structure of Mycobacterium tuberculosis Rv0302, form I

Chou, T.-H., Delmar, J., Su, C.-C., Yu, E.

(2015) Protein Sci

Released	2015-10-07
Method	X-RAY DIFFRACTION 2.04 Å
Organisms	Mycobacterium tuberculosis
Macromolecule	TetR family transcriptional regulator (protein)
Unique Ligands	EPE, IPA, NA

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5D19 \| pdb_00005d19	Download File View File

Crystal structure of Mycobacterium tuberculosis Rv0302, form II

Chou, T.-H., Delmar, J., Su, C.-C., Yu, E.

(2015) Protein Sci

Released	2015-10-07
Method	X-RAY DIFFRACTION 2.655 Å
Organisms	Mycobacterium tuberculosis
Macromolecule	TetR family transcriptional regulator (protein)

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5D1R \| pdb_00005d1r	Download File View File

Crystal structure of Mycobacterium tuberculosis Rv1816 transcriptional regulator.

Chou, T.-H., Delmar, J., Su, C.-C., Yu, E.

(2015) J Biological Chem 290: 28559-28574

Released	2015-09-30
Method	X-RAY DIFFRACTION 2 Å
Organisms	Mycobacterium tuberculosis CDC1551
Macromolecule	Rv1816 transcriptional regulator (protein)
Unique Ligands	56S, MG, NI, SO4

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5D1W \| pdb_00005d1w	Download File View File

Crystal structure of Mycobacterium tuberculosis Rv3249c transcriptional regulator.

Chou, T.-H., Delmar, J., Su, C.-C., Yu, E.

(2015) J Biological Chem 290: 28559-28574

Released	2015-09-30
Method	X-RAY DIFFRACTION 3.59 Å
Organisms	Mycobacterium tuberculosis H37Rv
Macromolecule	Rv3249c transcriptional regulator (protein)
Unique Ligands	PLM

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5D9R \| pdb_00005d9r	Download File View File

Crystal structure of a conserved domain in the intermembrane space region of the plastid division protein ARC6

Radhakrishnan, A., Kumar, N., Su, C.-C., Chou, T.-H., Yu, E.

(2016) Protein Sci 25: 523-529

Released	2015-11-11
Method	X-RAY DIFFRACTION 2.052 Å
Organisms	Arabidopsis thaliana
Macromolecule	Protein ACCUMULATION AND REPLICATION OF CHLOROPLASTS 6, chloroplastic (protein)

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5KHN \| pdb_00005khn	Download File View File

Crystal structures of the Burkholderia multivorans hopanoid transporter HpnN

Su, C.-C., Yu, E.W.

(2017) Proc Natl Acad Sci U S A 114: 6557-6562

Released	2017-06-14
Method	X-RAY DIFFRACTION 3.445 Å
Organisms	Burkholderia multivorans
Macromolecule	RND transporter (protein)

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5KHS \| pdb_00005khs	Download File View File

Crystal structures of the Burkholderia multivorans hopanoid transporter HpnN

Su, C.-C., Yu, E.W.

(2017) Proc Natl Acad Sci U S A 114: 6557-6562

Released	2017-06-14
Method	X-RAY DIFFRACTION 3.758 Å
Organisms	Burkholderia multivorans
Macromolecule	Putative RND superfamily efflux pump membrane protein (protein)

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5LQ3 \| pdb_00005lq3	Download File View File

Structures and transport dynamics of the Campylobacter jejuni multidrug efflux pump CmeB

Su, C.C.

(2017) Nat Commun 8: 171-171

Released	2017-08-09
Method	X-RAY DIFFRACTION 3.55 Å
Organisms	Campylobacter jejuni
Macromolecule	CmeB (protein)

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5T0O \| pdb_00005t0o	Download File View File

Crystal Structure of a membrane protein

Su, C.-C., Yu, E.W.

(2017) Nat Commun 8: 171-171

Released	2017-09-06
Method	X-RAY DIFFRACTION 3.15 Å
Organisms	Campylobacter jejuni
Macromolecule	CmeB (protein)

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6CBC \| pdb_00006cbc	Download File View File

Crystal structure of an N-terminal fragment of Vps13.

Kumar, N., Horenkamp, F.A., Reinisch, K.M.

(2018) J Cell Biol 217: 3625-3639

Released	2018-08-08
Method	X-RAY DIFFRACTION 3 Å
Organisms	Thermochaetoides thermophila DSM 1495
Macromolecule	Vacuolar protein sorting-associated protein (protein)