RCSB PDB: Search

Warning You are using a web browser that we do not support. Our website will not work properly. Please update to a newer version or download a new web browser, such as Chrome or Firefox.

Help

Help

RCSB PDB

Deposit
- PDBx/mmCIF file
- pdb_extract
- SF-Tool
- Ligand Expo
- MAXIT
- Validation Server
- Validation API
- Information for Journals
- Validation Task Forces
- wwPDB OneDep System
- PDB-IHM
Search
Visualize
Analyze
Download
Learn
- Training Courses
- Guide to PDB Data
- Molecule of the Month
- Educational Resources
- Curricula
- Browse
- News
- SciArt Galleries
- Irving Geis
- David Goodsell
About
Careers
COVID-19

233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

	Include CSM
Advanced Search \| Browse Annotations		Help

Search
Query History
Browse Annotations
MyPDB

QUERY: Citation Author = "Kuramitsu, S."

MyPDB Login

Search API

Advanced Search Query Builder

Help

Full Text

Structure Attributes

Help

NOT

Count

Add Subquery

Chemical Attributes

Sequence Similarity

Sequence Motif

Structure Similarity

Structure Motif

Chemical Similarity

Return

grouped by

Include Computed Structure Models (CSM)

Count

Clear

Search Summary

This query matches 552 Structures.

Refinements

Structure Determination Methodology

experimental (552)

Scientific Name of Source Organism

	Thermus thermophilus HB8 (205)
	Thermus thermophilus (134)
	Aquifex aeolicus VF5 (35)
	Pyrococcus horikoshii OT3 (22)
	Escherichia coli (20)
	Homo sapiens (18)
	Aquifex aeolicus (14)
	Geobacillus kaustophilus HTA426 (13)
	Sulfurisphaera tokodaii (13)
	Pyrococcus furiosus (10)

More...

Taxonomy

	Bacteria (443)
	Archaea (86)
	Eukaryota (21)
	other sequences (2)
	Riboviria (1)
	unclassified sequences (1)

Experimental Method

	X-RAY DIFFRACTION (547)
	SOLUTION NMR (5)

Polymer Entity Type

	Protein (552)
	DNA (6)
	RNA (4)

Refinement Resolution (Å)

	0.5 - 1.0 (2)
	1.0 - 1.5 (13)
	1.5 - 2.0 (225)
	2.0 - 2.5 (220)
	2.5 - 3.0 (77)
	3.0 - 3.5 (10)

Release Date

	1990 - 1994 (6)
	1995 - 1999 (14)
	2000 - 2004 (124)
	2005 - 2009 (327)
	2010 - 2014 (73)
	2015 - 2019 (6)
	2020 - 2024 (1)
	2025 - 2029 (1)

Enzyme Classification Name

	Transferases (114)
	Hydrolases (100)
	Lyases (62)
	Oxidoreductases (44)
	Ligases (43)
	Isomerases (16)
	Translocases (2)

Membrane Protein Annotation

	MemProtMD (1)
	PDBTM (1)

Symmetry Type

	Cyclic (303)
	Asymmetric (206)
	Dihedral (107)
	Tetrahedral (3)

SCOP Classification

	Alpha and beta proteins (a/b) (222)
	Alpha and beta proteins (a+b) (151)
	All beta proteins (39)
	All alpha proteins (27)
	Multi-domain proteins (alpha and beta) (11)
	Artifacts (14)
	Small proteins (2)

AllSelected

1 to 25 of 552 Structures

Page 1 of 23

Sort by

Explore in 3D

1AMQ \| pdb_00001amq	Download File View File

X-RAY CRYSTALLOGRAPHIC STUDY OF PYRIDOXAMINE 5'-PHOSPHATE-TYPE ASPARTATE AMINOTRANSFERASES FROM ESCHERICHIA COLI IN THREE FORMS

Miyahara, I., Hirotsu, K., Hayashi, H., Kagamiyama, H.

(1994) J Biochem 116: 1001-1012

Released	1994-09-30
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Escherichia coli
Macromolecule	ASPARTATE AMINOTRANSFERASE (protein)
Unique Ligands	PMP

Explore in 3D

1AMR \| pdb_00001amr	Download File View File

X-RAY CRYSTALLOGRAPHIC STUDY OF PYRIDOXAMINE 5'-PHOSPHATE-TYPE ASPARTATE AMINOTRANSFERASES FROM ESCHERICHIA COLI IN THREE FORMS

Miyahara, I., Hirotsu, K., Hayashi, H., Kagamiyama, H.

(1994) J Biochem 116: 1001-1012

Released	1994-09-30
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Escherichia coli
Macromolecule	ASPARTATE AMINOTRANSFERASE (protein)
Unique Ligands	MAE, PMP

Explore in 3D

1AMS \| pdb_00001ams	Download File View File

X-RAY CRYSTALLOGRAPHIC STUDY OF PYRIDOXAMINE 5'-PHOSPHATE-TYPE ASPARTATE AMINOTRANSFERASES FROM ESCHERICHIA COLI IN THREE FORMS

Miyahara, I., Hirotsu, K., Hayashi, H., Kagamiyama, H.

(1994) J Biochem 116: 1001-1012

Released	1994-09-30
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Escherichia coli
Macromolecule	ASPARTATE AMINOTRANSFERASE (protein)
Unique Ligands	GUA, PMP

Explore in 3D

1ARS \| pdb_00001ars	Download File View File

X-RAY CRYSTALLOGRAPHIC STUDY OF PYRIDOXAL 5'-PHOSPHATE-TYPE ASPARTATE AMINOTRANSFERASES FROM ESCHERICHIA COLI IN OPEN AND CLOSED FORM

Okamoto, A., Higuchi, T., Hirotsu, K.

(1994) J Biochem 116: 95-107

Released	1994-08-31
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Escherichia coli
Macromolecule	ASPARTATE AMINOTRANSFERASE (protein)
Unique Ligands	PLP

Explore in 3D

1ART \| pdb_00001art	Download File View File

X-RAY CRYSTALLOGRAPHIC STUDY OF PYRIDOXAL 5'-PHOSPHATE-TYPE ASPARTATE AMINOTRANSFERASES FROM ESCHERICHIA COLI IN OPEN AND CLOSED FORM

Okamoto, A., Higuchi, T., Hirotsu, K.

(1994) J Biochem 116: 95-107

Released	1994-08-31
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Escherichia coli
Macromolecule	ASPARTATE AMINOTRANSFERASE (protein)
Unique Ligands	0A0, PLP

Explore in 3D

1B5O \| pdb_00001b5o	Download File View File

THERMUS THERMOPHILUS ASPARTATE AMINOTRANSFERASE SINGLE MUTANT 1

Ura, H., Nakai, T., Kawaguchi, S.I., Miyahara, I., Hirotsu, K., Kuramitsu, S.

(2001) J Biochem 130: 89-98

Released	2003-09-02
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Thermus thermophilus HB8
Macromolecule	PROTEIN (ASPARTATE AMINOTRANSFERASE) (protein)
Unique Ligands	PLP, PO4

Explore in 3D

1B5P \| pdb_00001b5p	Download File View File

THERMUS THERMOPHILUS ASPARTATE AMINOTRANSFERASE DOUBLE MUTANT 1

Ura, H., Nakai, T., Kawaguchi, S.I., Miyahara, I., Hirotsu, K., Kuramitsu, S.

(2001) J Biochem 130: 89-98

Released	2003-09-02
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Thermus thermophilus HB8
Macromolecule	PROTEIN (ASPARTATE AMINOTRANSFERASE) (protein)
Unique Ligands	PLP, PO4

Explore in 3D

1BJW \| pdb_00001bjw	Download File View File

ASPARTATE AMINOTRANSFERASE FROM THERMUS THERMOPHILUS

Nakai, T., Okada, K., Kuramitsu, S., Hirotsu, K., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

(1999) Biochemistry 38: 2413-2424

Released	1999-07-22
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Thermus thermophilus HB8
Macromolecule	ASPARTATE AMINOTRANSFERASE (protein)
Unique Ligands	PO4

Explore in 3D

1BKG \| pdb_00001bkg	Download File View File

ASPARTATE AMINOTRANSFERASE FROM THERMUS THERMOPHILUS WITH MALEATE

Nakai, T., Okada, K., Kuramitsu, S., Hirotsu, K., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

(1999) Biochemistry 38: 2413-2424

Released	1999-07-22
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Thermus thermophilus HB8
Macromolecule	ASPARTATE AMINOTRANSFERASE (protein)
Unique Ligands	MAE, PMP

Explore in 3D

1C9C \| pdb_00001c9c	Download File View File

ASPARTATE AMINOTRANSFERASE COMPLEXED WITH C3-PYRIDOXAL-5'-PHOSPHATE

Ishijima, J., Nakai, T., Kawaguchi, S., Hirotsu, K., Kuramitsu, S.

(2000) J Biological Chem 275: 18939-18945

Released	2000-12-20
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Escherichia coli
Macromolecule	ASPARTATE AMINOTRANSFERASE (protein)
Unique Ligands	PP3

Explore in 3D

1CJ6 \| pdb_00001cj6	Download File View File

T11A MUTANT HUMAN LYSOZYME

Takano, K., Yamagata, Y., Funahashi, J., Yutani, K.

(1999) Biochemistry 38: 12698-12708

Released	1999-04-30
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Homo sapiens
Macromolecule	PROTEIN (LYSOZYME) (protein)
Unique Ligands	NA

Explore in 3D

1CJ7 \| pdb_00001cj7	Download File View File

T11V MUTANT HUMAN LYSOZYME

Takano, K., Yamagata, Y., Funahashi, J., Yutani, K.

(1999) Biochemistry 38: 12698-12708

Released	1999-04-30
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Homo sapiens
Macromolecule	PROTEIN (LYSOZYME) (protein)
Unique Ligands	NA

Explore in 3D

1CJ8 \| pdb_00001cj8	Download File View File

T40A MUTANT HUMAN LYSOZYME

Takano, K., Yamagata, Y., Funahashi, J., Yutani, K.

(1999) Biochemistry 38: 12698-12708

Released	1999-04-30
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Homo sapiens
Macromolecule	PROTEIN (LYSOZYME) (protein)
Unique Ligands	NA

Explore in 3D

1CJ9 \| pdb_00001cj9	Download File View File

T40V MUTANT HUMAN LYSOZYME

Takano, K., Yamagata, Y., Funahashi, J., Yutani, K.

(1999) Biochemistry 38: 12698-12708

Released	1999-04-30
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Homo sapiens
Macromolecule	PROTEIN (LYSOZYME) (protein)
Unique Ligands	NA

Explore in 3D

1CKC \| pdb_00001ckc	Download File View File

T43A MUTANT HUMAN LYSOZYME

Takano, K., Yamagata, Y., Funahashi, J., Yutani, K.

(1999) Biochemistry 38: 12698-12708

Released	1999-04-30
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Homo sapiens
Macromolecule	PROTEIN (LYSOZYME) (protein)
Unique Ligands	NA

Explore in 3D

1CKD \| pdb_00001ckd	Download File View File

T43V MUTANT HUMAN LYSOZYME

Takano, K., Yamagata, Y., Funahashi, J., Yutani, K.

(1999) Biochemistry 38: 12698-12708

Released	1999-04-30
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Homo sapiens
Macromolecule	PROTEIN (LYSOZYME) (protein)
Unique Ligands	NA

Explore in 3D

1CKF \| pdb_00001ckf	Download File View File

T52A MUTANT HUMAN LYSOZYME

Takano, K., Yamagata, Y., Funahashi, J., Yutani, K.

(1999) Biochemistry 38: 12698-12708

Released	1999-04-30
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Homo sapiens
Macromolecule	PROTEIN (LYSOZYME) (protein)
Unique Ligands	NA

Explore in 3D

1CKG \| pdb_00001ckg	Download File View File

T52V MUTANT HUMAN LYSOZYME

Takano, K., Yamagata, Y., Funahashi, J., Yutani, K.

(1999) Biochemistry 38: 12698-12708

Released	1999-05-05
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Homo sapiens
Macromolecule	Lysozyme C (protein)

Explore in 3D

1CKH \| pdb_00001ckh	Download File View File

T70V MUTANT HUMAN LYSOZYME

Takano, K., Yamagata, Y., Funahashi, J., Yutani, K.

(1999) Biochemistry 38: 12698-12708

Released	1999-04-30
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	PROTEIN (LYSOZYME) (protein)

Explore in 3D

1CQ6 \| pdb_00001cq6	Download File View File

ASPARTATE AMINOTRANSFERASE COMPLEX WITH C4-PYRIDOXAL-5P-PHOSPHATE

Ishijima, J., Nakai, T., Kawaguchi, S., Hirotsu, K., Kuramitsu, S.

(2000) J Biological Chem 275: 18939-18945

Released	2000-12-20
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Escherichia coli
Macromolecule	ASPARTATE AMINOTRANSFERASE (protein)
Unique Ligands	PY4

Explore in 3D

1CQ7 \| pdb_00001cq7	Download File View File

ASPARTATE AMINOTRANSFERASE (E.C. 2.6.1.1) COMPLEXED WITH C5-PYRIDOXAL-5P-PHOSPHATE

Ishijima, J., Nakai, T., Kawaguchi, S., Hirotsu, K., Kuramitsu, S.

(2000) J Biological Chem 275: 18939-18945

Released	2000-12-20
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Escherichia coli
Macromolecule	ASPARTATE AMINOTRANSFERASE (protein)
Unique Ligands	PY5

Explore in 3D

1CQ8 \| pdb_00001cq8	Download File View File

ASPARTATE AMINOTRANSFERASE (E.C. 2.6.1.1) COMPLEXED WITH C6-PYRIDOXAL-5P-PHOSPHATE

Ishijima, J., Nakai, T., Kawaguchi, S., Hirotsu, K., Kuramitsu, S.

(2000) J Biological Chem 275: 18939-18945

Released	2000-12-20
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Escherichia coli
Macromolecule	ASPARTATE AMINOTRANSFERASE (2.6.1.1) (protein)
Unique Ligands	PY6

Explore in 3D

1D2M \| pdb_00001d2m	Download File View File

UVRB PROTEIN OF THERMUS THERMOPHILUS HB8; A NUCLEOTIDE EXCISION REPAIR ENZYME

Nakagawa, N., Sugahara, M., Masui, R., Kato, R., Fukuyama, K., Kuramitsu, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

(1999) J Biochem 126: 986-990

Released	2000-03-22
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Thermus thermophilus HB8
Macromolecule	EXCINUCLEASE ABC SUBUNIT B (protein)
Unique Ligands	BOG, SO4