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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Lamb, D.C."

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Search Summary

This query matches 33 Structures.

Refinements

Structure Determination Methodology

experimental (33)

Scientific Name of Source Organism

	Streptomyces coelicolor A3(2) (10)
	Methylococcus capsulatus str. Bath (3)
	Acanthamoeba castellanii (2)
	Aspergillus fumigatus (2)
	Homo sapiens (2)
	Mycolicibacterium smegmatis MC2 155 (2)
	Rotavirus A (2)
	Saccharomyces cerevisiae (2)
	Streptomyces nodosus (2)
	Escherichia coli (1)

More...

Taxonomy

	Bacteria (21)
	Eukaryota (8)
	Riboviria (3)
	Duplodnaviria (1)
	Varidnaviria (1)

Experimental Method

	X-RAY DIFFRACTION (30)
	ELECTRON MICROSCOPY (3)

Polymer Entity Type

Protein (33)

Refinement Resolution (Å)

	1.0 - 1.5 (1)
	1.5 - 2.0 (10)
	2.0 - 2.5 (6)
	2.5 - 3.0 (10)
	3.0 - 3.5 (4)
	3.5 - 4.0 (1)
	> 4.5 (1)

Release Date

	2000 - 2004 (2)
	2005 - 2009 (11)
	2010 - 2014 (3)
	2015 - 2019 (7)
	2020 - 2024 (9)
	2025 - 2029 (1)

Enzyme Classification Name

	Oxidoreductases (21)
	Hydrolases (2)
	Lyases (2)
	Transferases (1)

Membrane Protein Annotation

	OPM (2)
	PDBTM (1)

Symmetry Type

	Asymmetric (28)
	Cyclic (3)
	Dihedral (2)

SCOP Classification

	All alpha proteins (14)
	Artifacts (9)
	All beta proteins (1)
	Alpha and beta proteins (a+b) (1)
	Alpha and beta proteins (a/b) (1)

AllSelected

1 to 25 of 33 Structures

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1GWI \| pdb_00001gwi	Download File View File

The 1.92 A structure of Streptomyces coelicolor A3(2) CYP154C1: A new monooxygenase that functionalizes macrolide ring systems

Podust, L.M., Kim, Y., Arase, M., Neely, B.A., Beck, B.J., Bach, H., Sherman, D.H., Lamb, D.C., Kelly, S.L., Waterman, M.R.

(2003) J Biological Chem 278: 12214

Released	2003-01-29
Method	X-RAY DIFFRACTION 1.92 Å
Organisms	Streptomyces coelicolor A3(2)
Macromolecule	CYTOCHROME P450 154C1 (protein)
Unique Ligands	HEM, SO4

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1ODO \| pdb_00001odo	Download File View File

1.85 A structure of CYP154A1 from Streptomyces coelicolor A3(2)

Podust, L.M., Kim, Y., Arase, M., Bach, H., Sherman, D.H., Lamb, D.C., Kelly, S.L., Waterman, M.R.

(2004) Protein Sci 13: 255

Released	2004-01-02
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Streptomyces coelicolor A3(2)
Macromolecule	PUTATIVE CYTOCHROME P450 154A1 (protein)
Unique Ligands	HEM, PIM

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1S1F \| pdb_00001s1f	Download File View File

Crystal Structure of Streptomyces Coelicolor A3(2) CYP158A2 from antibiotic biosynthetic pathways

Zhao, B., Lamb, D.C., Lei, L., Sundaramoorthy, M., Podust, L.M., Waterman, M.R.

(2005) J Biological Chem 280: 11599-11607

Released	2005-01-11
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Streptomyces coelicolor A3(2)
Macromolecule	putative cytochrome P450 (protein)
Unique Ligands	GOL, HEM, HG, MLA, PIM

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1SE6 \| pdb_00001se6	Download File View File

Crystal Structure of Streptomyces Coelicolor A3(2) CYP158A2 from antibiotic biosynthetic pathways

Zhao, B., Lamb, D.C., Lei, L., Sundaramoorthy, M., Podust, L.M., Waterman, M.R.

(2005) J Biological Chem 280: 11599-11607

Released	2005-01-25
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Streptomyces coelicolor A3(2)
Macromolecule	putative cytochrome P450 (protein)
Unique Ligands	HEM, MES, SPK

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1T93 \| pdb_00001t93	Download File View File

Evidence for Multiple Substrate Recognition and Molecular Mechanism of C-C reaction by Cytochrome P450 CYP158A2 from Streptomyces Coelicolor A3(2)

Zhao, B., Sundaramoorthy, M., Waterman, M.R.

(2005) J Biological Chem 280: 11599-11607

Released	2005-01-25
Method	X-RAY DIFFRACTION 1.62 Å
Organisms	Streptomyces coelicolor A3(2)
Macromolecule	putative cytochrome P450 (protein)
Unique Ligands	FLV, HEM

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2BF4 \| pdb_00002bf4	Download File View File

A second FMN-binding site in yeast NADPH-cytochrome P450 reductase suggests a novel mechanism of electron transfer by diflavin reductases.

Podust, L.M., Lepesheva, G.I., Kim, Y., Yermalitskaya, L.V., Yermalitsky, V.N., Lamb, D.C., Kelly, S.L., Waterman, M.R.

(2006) Structure 14: 51

Released	2006-01-17
Method	X-RAY DIFFRACTION 3 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	NADPH-CYTOCHROME P450 REDUCTASE (protein)
Unique Ligands	FAD, FMN, NAP, SO4

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2BN4 \| pdb_00002bn4	Download File View File

A second FMN-binding site in yeast NADPH-cytochrome P450 reductase suggests a novel mechanism of electron transfer by diflavin reductase

Podust, L.M., Lepesheva, G.I., Kim, Y., Yermalitskaya, L.V., Yermalitsky, V.N., Lamb, D.C., Kelly, S.L., Waterman, M.R.

(2006) Structure 14: 51

Released	2006-01-17
Method	X-RAY DIFFRACTION 2.91 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	NADPH CYTOCHROME P450 REDUCTASE (protein)
Unique Ligands	FAD, FMN, NAP

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2D09 \| pdb_00002d09	Download File View File

A Role for Active Site Water Molecules and Hydroxyl Groups of Substrate for Oxygen Activation in Cytochrome P450 158A2

Zhao, B., Waterman, M.R.

(2005) J Biological Chem 280: 42188-42197

Released	2005-10-25
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Streptomyces coelicolor A3(2)
Macromolecule	putative cytochrome P450 (protein)
Unique Ligands	FLV, HEM, OXY

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2DKK \| pdb_00002dkk	Download File View File

Structure/Function studies of Cytochrome P450 158A1 from Streptomyces Coelicolor A3(2)

Zhao, B.

(2007) Biochemistry 46: 8725-8733

Released	2007-04-17
Method	X-RAY DIFFRACTION 1.97 Å
Organisms	Streptomyces coelicolor A3(2)
Macromolecule	cytochrome P450 (protein)
Unique Ligands	HEM, IMD

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2NZ5 \| pdb_00002nz5	Download File View File

Structure and Function Studies of Cytochrome P450 158A1 from Streptomyces coelicolor A3(2)

Zhao, B., Lamb, D.C., Kelly, S.L., Waterman, M.R.

(2007) Biochemistry 46: 8725-8733

Released	2007-07-03
Method	X-RAY DIFFRACTION 2.35 Å
Organisms	Streptomyces coelicolor A3(2)
Macromolecule	Cytochrome P450 CYP158A1 (protein)
Unique Ligands	226, HEM

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2NZA \| pdb_00002nza	Download File View File

Structure and Function Studies of Cytochrome P450 158A1 from Streptomyces coelicolor A3(2)

Zhao, B., Waterman, M.R.

(2007) Biochemistry 46: 8725-8733

Released	2007-07-03
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Streptomyces coelicolor A3(2)
Macromolecule	Cytochrome P450 CYP158A1 (protein)
Unique Ligands	HEM

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3DBG \| pdb_00003dbg	Download File View File

Crystal structure of Cytochrome P450 170A1 (CYP170A1) from Streptomyces coelicolor

Zhao, B., Vassylyev, D.G., Waterman, M.R.

(2009) J Biological Chem 284: 36711-36719

Released	2009-06-02
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Streptomyces coelicolor A3(2)
Macromolecule	Putative cytochrome P450 (protein)
Unique Ligands	HEM

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3EL3 \| pdb_00003el3	Download File View File

Distinct Monooxygenase and Farnesene Synthase Active Sites in Cytochrome P450 170A1

Zhao, B., Waterman, M.R.

(2009) J Biological Chem 284: 36711-36719

Released	2009-09-29
Method	X-RAY DIFFRACTION 3.3 Å
Organisms	Streptomyces coelicolor
Macromolecule	Putative cytochrome P450 (protein)
Unique Ligands	EL3, HEM

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3R9B \| pdb_00003r9b	Download File View File

Crystal structure of Mycobacterium smegmatis CYP164A2 in ligand free state

Agnew, C.R.J., Warrilow, A.G.S., Kelly, S.L., Brady, R.L.

(2012) Antimicrob Agents Chemother 56: 391-402

Released	2012-04-04
Method	X-RAY DIFFRACTION 1.89 Å
Organisms	Mycolicibacterium smegmatis MC2 155
Macromolecule	CYTOCHROME P450 164A2 (protein)
Unique Ligands	D12, EDO, HEM, K, NA, PO4

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3R9C \| pdb_00003r9c	Download File View File

Crystal structure of Mycobacterium smegmatis CYP164A2 with Econazole bound

Agnew, C.R.J., Kelly, S.L., Brady, R.L.

(2012) Antimicrob Agents Chemother 56: 391-402

Released	2012-03-28
Method	X-RAY DIFFRACTION 2.14 Å
Organisms	Mycolicibacterium smegmatis MC2 155
Macromolecule	Cytochrome P450 164A2 (protein)
Unique Ligands	ECL, EDO, HEM, NA

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4B8N \| pdb_00004b8n	Download File View File

Cytochrome b5 of Ostreococcus tauri virus 2

Isupov, M., Reid, E.L., Weynberg, K.D., Love, J., Wilson, W.H., Kelly, S.L., Lamb, D.C., Allen, M.J., Littlechild, J.A.

(2013) FEBS Lett 587: 3633

Released	2013-09-04
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Ostreococcus tauri virus 2
Macromolecule	CYTOCHROME B5-HOST ORIGIN (protein)
Unique Ligands	HEM, SO4

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4UYL \| pdb_00004uyl	Download File View File

Crystal structure of sterol 14-alpha demethylase (CYP51B) from a pathogenic filamentous fungus Aspergillus fumigatus in complex with VNI

Hargrove, T.Y., Wawrzak, Z., Lepesheva, G.I.

(2015) J Biological Chem 290: 23916

Released	2015-08-19
Method	X-RAY DIFFRACTION 2.81 Å
Organisms	Aspergillus fumigatus
Macromolecule	14-ALPHA STEROL DEMETHYLASE (protein)
Unique Ligands	HEM, VNI

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4UYM \| pdb_00004uym	Download File View File

Crystal structure of sterol 14-alpha demethylase (CYP51B) from a pathogenic filamentous fungus Aspergillus fumigatus in complex with voriconazole

Hargrove, T.Y., Wawrzak, Z., Lepesheva, G.I.

(2015) J Biological Chem 290: 23916

Released	2015-08-19
Method	X-RAY DIFFRACTION 2.55 Å
Organisms	Aspergillus fumigatus
Macromolecule	14-ALPHA STEROL DEMETHYLASE (protein)
Unique Ligands	HEM, VOR

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5EU7 \| pdb_00005eu7	Download File View File

Crystal structure of HIV-1 integrase catalytic core in complex with Fab

Galilee, M., Griner, S.L., Stroud, R.M., Alian, A.

(2016) Structure 24: 1936-1946

Released	2016-09-28
Method	X-RAY DIFFRACTION 2.64 Å
Organisms	Homo sapiens Human immunodeficiency virus 1
Macromolecule	FAB Heavy Chain (protein) FAB light chain (protein) Integrase (protein)

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5M5H \| pdb_00005m5h	Download File View File

RIBOSOME-BOUND YIDC INSERTASE

Kedrov, A., Wickles, S., Crevenna, A.H., van der Sluis, E., Buschauer, R., Berninghausen, O., Lamb, D.C., Beckmann, R.

(2016) Cell Rep 17: 2943-2954

Released	2016-12-14
Method	ELECTRON MICROSCOPY 4.5 Å
Organisms	Escherichia coli
Macromolecule	Membrane protein insertase YidC (protein)

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6MCW \| pdb_00006mcw	Download File View File

Crystal structure of the P450 domain of the CYP51-ferredoxin fusion protein from Methylococcus capsulatus, complex with the detergent Anapoe-X-114

Hargrove, T., Wawrzak, Z., Lamb, D.C., Lepesheva, G.I.

(2020) Mol Biol Evol

Released	2019-07-10
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Methylococcus capsulatus str. Bath
Macromolecule	Cytochrome P450 51 (protein)
Unique Ligands	HEM, JDJ

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6MI0 \| pdb_00006mi0	Download File View File

Crystal structure of the P450 domain of the CYP51-ferredoxin fusion protein from Methylococcus capsulatus, ligand-free state

Hargrove, T., Wawrzak, Z., Lamb, D.C., Lepesheva, G.I.

(2020) Mol Biol Evol

Released	2019-07-10
Method	X-RAY DIFFRACTION 2.73 Å
Organisms	Methylococcus capsulatus str. Bath
Macromolecule	Cytochrome P450 51 (protein)
Unique Ligands	HEM

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6N6Q \| pdb_00006n6q	Download File View File

Crystal structure of a Cytochrome P450 (CYP102L1)

Follmer, A.H., Poulos, T.L.

(2019) Proc Natl Acad Sci U S A 116: 12343-12352

Released	2019-06-05
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Mycobacterium phage Adler
Macromolecule	Cytochrome P450 (CYP102L1) (protein)
Unique Ligands	CAC, HEM

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7JJ1 \| pdb_00007jj1	Download File View File

Crystal structure of the sterol 14alpha-demethylase-ferredoxin (CYP51-fx) heme domain and architectural comparison to the whole fusion protein

Zhao, B., Lamb, D.C.

To be published

Released	2021-07-28
Method	X-RAY DIFFRACTION 3 Å
Organisms	Methylococcus capsulatus
Macromolecule	Cytochrome P450 51 (protein)
Unique Ligands	16A, HEM, IMD

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7NDX \| pdb_00007ndx	Download File View File

Crystal structure of the human HSP40 DNAJB1-CTDs in complex with a peptide of NudC

Delhommel, F., Zak, K.M., Popowicz, G.M., Sattler, M.

(2022) Mol Cell 82: 555

Released	2022-01-19
Method	X-RAY DIFFRACTION 2.541 Å
Organisms	Homo sapiens
Macromolecule	DnaJ homolog subfamily B member 1 (protein) Nuclear migration protein nudC (protein)
Unique Ligands	EDO

1 to 25 of 33 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1GWI | pdb_00001gwi

1ODO | pdb_00001odo

1S1F | pdb_00001s1f

1SE6 | pdb_00001se6

1T93 | pdb_00001t93

2BF4 | pdb_00002bf4

2BN4 | pdb_00002bn4

2D09 | pdb_00002d09

2DKK | pdb_00002dkk

2NZ5 | pdb_00002nz5

2NZA | pdb_00002nza

3DBG | pdb_00003dbg

3EL3 | pdb_00003el3

3R9B | pdb_00003r9b

3R9C | pdb_00003r9c

4B8N | pdb_00004b8n

4UYL | pdb_00004uyl

4UYM | pdb_00004uym

5EU7 | pdb_00005eu7

5M5H | pdb_00005m5h

6MCW | pdb_00006mcw

6MI0 | pdb_00006mi0

6N6Q | pdb_00006n6q

7JJ1 | pdb_00007jj1

7NDX | pdb_00007ndx