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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Lee, D."

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Search Summary

This query matches 326 Structures.

Refinements

Structure Determination Methodology

experimental (326)

Scientific Name of Source Organism

	Homo sapiens (130)
	Pyrococcus furiosus (18)
	Mus musculus (11)
	synthetic construct (10)
	Corynebacterium glutamicum ATCC 13032 (9)
	Human immunodeficiency virus 1 (9)
	Acetivibrio thermocellus (6)
	Pseudomonas putida (6)
	Pyrococcus furiosus DSM 3638 (6)
	Bacteroides thetaiotaomicron (5)

More...

Taxonomy

	Eukaryota (149)
	Bacteria (127)
	Archaea (34)
	Riboviria (12)
	other sequences (10)
	Eukaryota (eukaryotes) (3)

Experimental Method

	X-RAY DIFFRACTION (239)
	SOLUTION NMR (64)
	ELECTRON MICROSCOPY (23)
	SOLUTION SCATTERING (1)

Polymer Entity Type

Protein (326)

Refinement Resolution (Å)

	1.0 - 1.5 (10)
	1.5 - 2.0 (79)
	2.0 - 2.5 (95)
	2.5 - 3.0 (43)
	3.0 - 3.5 (12)
	3.5 - 4.0 (9)
	4.0 - 4.5 (6)
	> 4.5 (8)

Release Date

	1995 - 1999 (2)
	2000 - 2004 (33)
	2005 - 2009 (59)
	2010 - 2014 (86)
	2015 - 2019 (71)
	2020 - 2024 (71)
	2025 - 2029 (4)

Enzyme Classification Name

	Hydrolases (91)
	Oxidoreductases (37)
	Transferases (29)
	Isomerases (13)
	Lyases (10)
	Ligases (3)

Membrane Protein Annotation

	OPM (3)
	MemProtMD (1)
	PDBTM (1)

Symmetry Type

	Asymmetric (231)
	Cyclic (95)
	Dihedral (25)

SCOP Classification

	Alpha and beta proteins (a/b) (56)
	All alpha proteins (38)
	Artifacts (49)
	Alpha and beta proteins (a+b) (34)
	All beta proteins (14)
	Peptides (3)
	Small proteins (2)
	Membrane and cell surface proteins and peptides (1)
	Multi-domain proteins (alpha and beta) (1)

AllSelected

1 to 25 of 326 Structures

Page 1 of 14

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1DMM \| pdb_00001dmm	Download File View File

CRYSTAL STRUCTURES OF MUTANT ENZYMES Y57F OF KETOSTEROID ISOMERASE FROM PSEUDOMONAS PUTIDA BIOTYPE B

Kim, D.H., Jang, D.S., Nam, G.H., Oh, B.H., Choi, K.Y.

(2000) Biochemistry 39: 4581-4589

Released	2000-05-23
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Pseudomonas putida
Macromolecule	STEROID DELTA-ISOMERASE (protein)

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1DMN \| pdb_00001dmn	Download File View File

CRYSTAL STRUCTURE OF MUTANT ENZYME Y32F/Y57F OF KETOSTEROID ISOMERASE FROM PSEUDOMONAS PUTIDA BIOTYPE B

Kim, D.H., Jang, D.S., Nam, G.H., Oh, B.H., Choi, K.Y.

(2000) Biochemistry 39: 4581-4589

Released	2000-05-23
Method	X-RAY DIFFRACTION 2.05 Å
Organisms	Pseudomonas putida
Macromolecule	STEROID DELTA-ISOMERASE (protein)

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1DMQ \| pdb_00001dmq	Download File View File

CRYSTAL STRUCTURE OF MUTANT ENZYME Y32F OF KETOSTEROID ISOMERASE FROM PSEUDOMONAS PUTIDA BIOTYPE B

Kim, D.H., Jang, D.S., Nam, G.H., Oh, B.H., Choi, K.Y.

(2000) Biochemistry 39: 4581-4589

Released	2000-05-23
Method	X-RAY DIFFRACTION 2.15 Å
Organisms	Pseudomonas putida
Macromolecule	STEROID DELTA-ISOMERASE (protein)

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1EHE \| pdb_00001ehe	Download File View File

CRYSTAL STRUCTURES OF CYTOCHROME P450NOR AND ITS MUTANTS (SER286 VAL, THR) IN THE FERRIC RESTING STATE AT CRYOGENIC TEMPERATURE: A COMPARATIVE ANALYSIS WITH MONOOXYGENASE CYTOCHROME P450S

Shimizu, H., Park, S.

(2000) J Inorg Biochem 81: 191-205

Released	2000-08-21
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Fusarium oxysporum
Macromolecule	CYTOCHROME P450NOR (protein)
Unique Ligands	HEM

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1EHF \| pdb_00001ehf	Download File View File

CRYSTAL STRUCTURES OF CYTOCHROME P450NOR AND ITS MUTANTS (SER286 VAL, THR) IN THE FERRIC RESTING STATE AT CRYOGENIC TEMPERATURE: A COMPARATIVE ANALYSIS WITH MONOOXYGENASE CYTOCHROME P450S

Shimizu, H., Park, S.

(2000) J Inorg Biochem 81: 191-205

Released	2000-08-21
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Fusarium oxysporum
Macromolecule	CYTOCHROME P450NOR (protein)
Unique Ligands	HEM

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1EHG \| pdb_00001ehg	Download File View File

CRYSTAL STRUCTURES OF CYTOCHROME P450NOR AND ITS MUTANTS (SER286 VAL, THR) IN THE FERRIC RESTING STATE AT CRYOGENIC TEMPERATURE: A COMPARATIVE ANALYSIS WITH MONOOXYGENASE CYTOCHROME P450S

Shimizu, H., Park, S.

(2000) J Inorg Biochem 81: 191-205

Released	2000-08-21
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Fusarium oxysporum
Macromolecule	CYTOCHROME P450NOR (protein)
Unique Ligands	HEM

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1EJP \| pdb_00001ejp	Download File View File

SOLUTION STRUCTURE OF THE SYNDECAN-4 WHOLE CYTOPLASMIC DOMAIN

Lee, D., Oh, E.S., Woods, A., Couchman, J.R., Lee, W.

(2001) Biochemistry 40: 8471-8478

Released	2001-09-19
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	SYNDECAN-4 (protein)

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1EJQ \| pdb_00001ejq	Download File View File

SOLUTION STRUCTURE OF THE SYNDECAN-4 WHOLE CYTOPLASMIC DOMAIN IN THE PRESENCE OF PHOSPHATIDYLINOSITOL 4,5-BISPHOSPHATE

Shin, J., Oh, E.S., Lee, D., Couchman, J.R., Lee, W.

To be published

Released	2001-03-07
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	SYNDECAN-4 (protein)

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1GFW \| pdb_00001gfw	Download File View File

THE 2.8 ANGSTROM CRYSTAL STRUCTURE OF CASPASE-3 (APOPAIN OR CPP32)IN COMPLEX WITH AN ISATIN SULFONAMIDE INHIBITOR.

Concha, N.O., Janson, C.A.

(2000) J Biological Chem 275: 16007-16014

Released	2000-06-23
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Homo sapiens
Macromolecule	CASPASE-3 (APOPAIN, P10) (protein) CASPASE-3 (APOPAIN, P20) (protein)
Unique Ligands	MSI

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1KVO \| pdb_00001kvo	Download File View File

HUMAN PHOSPHOLIPASE A2 COMPLEXED WITH A HIGHLY POTENT SUBSTRATE ANOLOGUE

Cha, S.-S., Abdel-Meguid, S.S., Oh, B.-H.

(1996) J Med Chem 39: 3878-3881

Released	1997-07-07
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	HUMAN PHOSPHOLIPASE A2 (protein)
Unique Ligands	CA, OAP

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1LS8 \| pdb_00001ls8	Download File View File

NMR structure of the unliganded Bombyx mori pheromone-binding protein at physiological pH

Lee, D., Damberger, F., Horst, R., Guntert, P., Leal, W.S., Wuthrich, K.

(2002) FEBS Lett 531: 314-318

Released	2002-11-20
Method	SOLUTION NMR
Organisms	Bombyx mori
Macromolecule	pheromone binding protein (protein)

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1NME \| pdb_00001nme	Download File View File

Structure of Casp-3 with tethered salicylate

Erlanson, D.A., Lam, J., Wiesmann, C., Luong, T.N., Simmons, B., DeLano, W., Choong, I.C., Flanagan, M., Lee, D., O'Brian, T.

(2003) Nat Biotechnol 21: 308-314

Released	2003-03-11
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Homo sapiens
Macromolecule	Caspase-3 (protein)
Unique Ligands	158, 159

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1NMQ \| pdb_00001nmq	Download File View File

Extendend Tethering: In Situ Assembly of Inhibitors

Erlanson, D.A., Lam, J., Wiesmann, C., Luong, T.N., Simmons, R.L., DeLano, W., Choong, I.C., Flanagan, M., Lee, D., O'Brian, T.

(2003) Nat Biotechnol 21: 308-314

Released	2003-03-11
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Homo sapiens
Macromolecule	Caspase-3 (protein)
Unique Ligands	160

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1NMS \| pdb_00001nms	Download File View File

Caspase-3 tethered to irreversible inhibitor

Erlanson, D.A., Lam, J., Wiesmann, C., Luong, T.N., Simmons, R.L., DeLano, W.L., Choong, I.C., Flanagan, W.M., Lee, D., O'Brian, T.

(2003) Nat Biotechnol 21: 308-314

Released	2003-03-11
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Homo sapiens
Macromolecule	Caspase-3 (protein)
Unique Ligands	161

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1QJG \| pdb_00001qjg	Download File View File

Crystal structure of delta5-3-ketosteroid isomerase from Pseudomonas testosteroni in complex with equilenin

Cho, H.-S., Oh, B.-H.

(1999) J Biological Chem 274: 32863

Released	1999-11-16
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Comamonas testosteroni
Macromolecule	KETOSTEROID ISOMERASE (protein)
Unique Ligands	EQU, SO4

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1RYQ \| pdb_00001ryq	Download File View File

Putative DNA-directed RNA polymerase, subunit e'' from Pyrococcus Furiosus Pfu-263306-001

Liu, Z.-J., Chen, L., Tempel, W., Shah, A., Arendall III, W.B., Rose, J.P., Brereton, P.S., Izumi, M., Jenney Jr., F.E., Lee, H.S., Poole II, F.L., Shah, C., Sugar, F.J., Adams, M.W.W., Richardson, D.C., Richardson, J.S., Wang, B.-C., Southeast Collaboratory for Structural Genomics (SECSG)

(2005) Acta Crystallogr D Biol Crystallogr 61: 520-527

Released	2004-08-10
Method	X-RAY DIFFRACTION 1.38 Å
Organisms	Pyrococcus furiosus
Macromolecule	DNA-directed RNA polymerase, subunit e'' (protein)
Unique Ligands	ZN

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1SEN \| pdb_00001sen	Download File View File

Endoplasmic reticulum protein Rp19 O95881

Liu, Z.-J., Chen, L., Tempel, W., Shah, A., Lee, D., Dailey, T.A., Mayer, M.R., Rose, J.P., Richardson, D.C., Richardson, J.S., Dailey, H.A., Wang, B.-C., Southeast Collaboratory for Structural Genomics (SECSG)

To be published

Released	2004-07-13
Method	X-RAY DIFFRACTION 1.199 Å
Organisms	Homo sapiens
Macromolecule	Thioredoxin-like protein p19 (protein)
Unique Ligands	CL, PT

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1SGW \| pdb_00001sgw	Download File View File

Putative ABC transporter (ATP-binding protein) from Pyrococcus furiosus Pfu-867808-001

Liu, Z.J., Tempel, W., Shah, A., Chen, L., Lee, D., Kelley, L.-L.C., Dillard, B.D., Rose, J.P., Eneh, J.C., Hopkins, R.C., Jenney Jr., F.E., Lee, H.S., Poole II, F.L., Shah, C., Sugar, F.J., Adams, M.W.W., Richardson, D.C., Richardson, J.S., Wang, B.C., Southeast Collaboratory for Structural Genomics (SECSG)

To be published

Released	2004-08-10
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Pyrococcus furiosus DSM 3638
Macromolecule	putative ABC transporter (protein)
Unique Ligands	CL, NA

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1UPS \| pdb_00001ups	Download File View File

GlcNAc[alpha]1-4Gal releasing endo-[beta]-galactosidase from Clostridium perfringens

Tempel, W., Liu, Z.-J., Horanyi, P.S., Deng, L., Lee, D., Newton, M.G., Rose, J.P., Ashida, H., Li, S.-C., Li, Y.-T., Wang, B.-C., Southeast Collaboratory for Structural Genomics (SECSG)

(2005) Proteins 59: 141-144

Released	2004-11-25
Method	X-RAY DIFFRACTION 1.82 Å
Organisms	Clostridium perfringens
Macromolecule	GLCNAC-ALPHA-1,4-GAL-RELEASING ENDO-BETA-GALACTOSIDASE (protein)
Unique Ligands	CA