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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Li, G."

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Search Summary

This query matches 307 Structures.

Refinements

Structure Determination Methodology

experimental (307)

Scientific Name of Source Organism

	Homo sapiens (160)
	Mus musculus (20)
	Escherichia coli K-12 (10)
	synthetic construct (9)
	Saccharomyces cerevisiae (8)
	Saccharomyces cerevisiae S288C (8)
	Pseudomonas aeruginosa (7)
	Aspergillus fumigatus Z5 (6)
	Klebsiella pneumoniae (6)
	Megasphaera (5)

More...

Taxonomy

	Eukaryota (230)
	Bacteria (63)
	Riboviria (15)
	other sequences (9)
	Varidnaviria (4)
	unclassified sequences (2)
	Duplodnaviria (1)
	Eukaryota (eukaryotes) (1)

Experimental Method

	X-RAY DIFFRACTION (242)
	ELECTRON MICROSCOPY (57)
	SOLUTION NMR (8)

Polymer Entity Type

	Protein (307)
	DNA (26)
	RNA (7)

Refinement Resolution (Å)

	0.5 - 1.0 (1)
	1.0 - 1.5 (24)
	1.5 - 2.0 (88)
	2.0 - 2.5 (68)
	2.5 - 3.0 (52)
	3.0 - 3.5 (35)
	3.5 - 4.0 (20)
	4.0 - 4.5 (4)
	> 4.5 (7)

Release Date

	2000 - 2004 (14)
	2005 - 2009 (26)
	2010 - 2014 (34)
	2015 - 2019 (73)
	2020 - 2024 (157)
	2025 - 2029 (3)

Enzyme Classification Name

	Hydrolases (96)
	Transferases (65)
	Oxidoreductases (20)
	Ligases (9)
	Isomerases (3)
	Translocases (2)

Membrane Protein Annotation

	PDBTM (9)
	MemProtMD (6)
	OPM (6)
	mpstruc (4)

Symmetry Type

	Asymmetric (222)
	Cyclic (77)
	Dihedral (10)
	Helical (5)
	Octahedral (2)

SCOP Classification

	All beta proteins (24)
	Alpha and beta proteins (a+b) (36)
	Alpha and beta proteins (a/b) (22)
	All alpha proteins (18)
	Artifacts (7)
	Coiled coil proteins (2)
	Membrane and cell surface proteins and peptides (1)
	Multi-domain proteins (alpha and beta) (2)
	Small proteins (2)

AllSelected

1 to 25 of 307 Structures

Page 1 of 13

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1D2R \| pdb_00001d2r	Download File View File

2.9 A CRYSTAL STRUCTURE OF LIGAND-FREE TRYPTOPHANYL-TRNA SYNTHETASE: DOMAIN MOVEMENTS FRAGMENT THE ADENINE NUCLEOTIDE BINDING SITE.

Ilyin, V.A., Carter Jr., C.W.

(2000) Protein Sci 9: 218-231

Released	2000-04-05
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Geobacillus stearothermophilus
Macromolecule	PROTEIN (TRYPTOPHANYL TRNA SYNTHETASE) (protein)

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1GH2 \| pdb_00001gh2	Download File View File

Crystal structure of the catalytic domain of a new human thioredoxin-like protein

Jin, J., Chen, X., Guo, Q., Yuan, J., Qiang, B., Rao, Z.

(2002) Eur J Biochem 269: 2060-2068

Released	2001-05-01
Method	X-RAY DIFFRACTION 2.22 Å
Organisms	Homo sapiens
Macromolecule	THIOREDOXIN-LIKE PROTEIN (protein)

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1N6H \| pdb_00001n6h	Download File View File

Crystal Structure of Human Rab5a

Zhu, G., Liu, J., Terzyan, S., Zhai, P., Li, G., Zhang, X.C.

(2003) J Biological Chem 278: 2452-2460

Released	2002-11-27
Method	X-RAY DIFFRACTION 1.51 Å
Organisms	Homo sapiens
Macromolecule	Ras-related protein Rab-5A (protein)
Unique Ligands	BME, GNP, MG

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1N6I \| pdb_00001n6i	Download File View File

Crystal Structure of Human Rab5a A30P mutant Complex with GDP

Zhu, G., Liu, J., Terzyan, S., Zhai, P., Li, G., Zhang, X.C.

(2003) J Biological Chem 278: 2452-2460

Released	2002-11-27
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Homo sapiens
Macromolecule	Ras-related protein Rab-5A (protein)
Unique Ligands	BME, GDP, MG

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1N6K \| pdb_00001n6k	Download File View File

Crystal Structure of Human Rab5a A30P mutant complex with GDP and aluminum fluoride

Zhu, G., Liu, J., Terzyan, S., Zhai, P., Li, G., Zhang, X.C.

(2003) J Biological Chem 278: 2452-2460

Released	2002-11-27
Method	X-RAY DIFFRACTION 1.55 Å
Organisms	Homo sapiens
Macromolecule	Ras-related protein Rab-5A (protein)
Unique Ligands	AF3, BME, GDP, MG

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1N6L \| pdb_00001n6l	Download File View File

Crystal Structure of Human Rab5a A30P mutant complex with GTP

Zhu, G., Liu, J., Terzyan, S., Zhai, P., Li, G., Zhang, X.C.

(2003) J Biological Chem 278: 2452-2460

Released	2002-11-27
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Homo sapiens
Macromolecule	Ras-related protein Rab-5A (protein)
Unique Ligands	BME, GTP, MG

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1N6N \| pdb_00001n6n	Download File View File

Crystal Structure of Human Rab5a A30R mutant complex with GppNHp

Zhu, G., Liu, J., Terzyan, S., Zhai, P., Li, G., Zhang, X.C.

(2003) J Biological Chem 278: 2452-2460

Released	2002-11-27
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Homo sapiens
Macromolecule	Ras-related protein Rab-5A (protein)
Unique Ligands	BME, GNP, MG

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1N6O \| pdb_00001n6o	Download File View File

Crystal Structure of Human Rab5a A30K mutant complex with GppNHp

Zhu, G., Liu, J., Terzyan, S., Zhai, P., Li, G., Zhang, X.C.

(2003) J Biological Chem 278: 2452-2460

Released	2002-11-27
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Homo sapiens
Macromolecule	Ras-related protein Rab-5A (protein)
Unique Ligands	BME, GNP, MG

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1N6P \| pdb_00001n6p	Download File View File

Crystal Structure of Human Rab5a A30E mutant complex with GppNHp

Zhu, G., Liu, J., Terzyan, S., Zhai, P., Li, G., Zhang, X.C.

(2003) J Biological Chem 278: 2452-2460

Released	2002-11-27
Method	X-RAY DIFFRACTION 1.54 Å
Organisms	Homo sapiens
Macromolecule	Ras-related protein Rab-5A (protein)
Unique Ligands	GNP, MG

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1N6R \| pdb_00001n6r	Download File View File

Crystal Structure of Human Rab5a A30L mutant complex with GppNHp

Zhu, G., Liu, J., Terzyan, S., Zhai, P., Li, G., Zhang, X.C.

(2003) J Biological Chem 278: 2452-2460

Released	2002-11-27
Method	X-RAY DIFFRACTION 1.55 Å
Organisms	Homo sapiens
Macromolecule	Ras-related protein Rab-5A (protein)
Unique Ligands	BME, GNP, MG

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1PWO \| pdb_00001pwo	Download File View File

Crystal Structure of Phospholipase A2 (MIPLA2) from Micropechis Ikaheka

Lok, S.M., Swaminathan, K.

(2005) FEBS J 272: 1211-1220

Released	2005-03-01
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Micropechis ikaheca
Macromolecule	Phospholipase A2 (protein)

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1R2Q \| pdb_00001r2q	Download File View File

Crystal Structure of Human Rab5a GTPase Domain at 1.05 A resolution

Terzyan, S., Zhu, G., Li, G., Zhang, X.C.

(2004) Acta Crystallogr D Biol Crystallogr 60: 54-60

Released	2003-12-23
Method	X-RAY DIFFRACTION 1.05 Å
Organisms	Homo sapiens
Macromolecule	Ras-related protein Rab-5A (protein)
Unique Ligands	GNP, GOL, MG

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1TU3 \| pdb_00001tu3	Download File View File

Crystal Structure of Rab5 complex with Rabaptin5 C-terminal Domain

Zhu, G., Zhai, P., Liu, J., Terzyan, S., Li, G., Zhang, X.C.

(2004) Nat Struct Mol Biol 11: 975-983

Released	2004-10-05
Method	X-RAY DIFFRACTION 2.31 Å
Organisms	Homo sapiens
Macromolecule	Rab GTPase binding effector protein 1 (protein) Ras-related protein Rab-5A (protein)
Unique Ligands	GNP, MG

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1TU4 \| pdb_00001tu4	Download File View File

Crystal Structure of Rab5-GDP Complex

Zhu, G., Zhai, P., Liu, J., Terzyan, S., Li, G., Zhang, X.C.

(2004) Nat Struct Mol Biol 11: 975-983

Released	2004-10-05
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Homo sapiens
Macromolecule	Ras-related protein Rab-5A (protein)
Unique Ligands	CO, GDP, SO4

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1X79 \| pdb_00001x79	Download File View File

Crystal structure of human GGA1 GAT domain complexed with the GAT-binding domain of Rabaptin5

Zhu, G., Zhang, X.C.

(2004) EMBO J 23: 3909-3917

Released	2004-10-12
Method	X-RAY DIFFRACTION 2.41 Å
Organisms	Homo sapiens
Macromolecule	ADP-ribosylation factor binding protein GGA1 (protein) Rab GTPase binding effector protein 1 (protein)
Unique Ligands	DTT, SO4

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2F4M \| pdb_00002f4m	Download File View File

The Mouse PNGase-HR23 Complex Reveals a Complete Remodulation of the Protein-Protein Interface Compared to its Yeast Orthologs

Zhao, G., Zhou, X., Wang, L., Kisker, C., Lennarz, W.J., Schindelin, H.

(2006) J Biological Chem 281: 13751-13761

Released	2006-03-07
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Mus musculus
Macromolecule	UV excision repair protein RAD23 homolog B (protein) peptide N-glycanase (protein)
Unique Ligands	CL, ZN

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2F4O \| pdb_00002f4o	Download File View File

The Mouse PNGase-HR23 Complex Reveals a Complete Remodulation of the Protein-Protein Interface Compared to its Yeast Orthologs

Zhao, G., Zhou, X., Wang, L., Kisker, C., Lennarz, W.J., Schindelin, H.

(2006) J Biological Chem 281: 13751-13761

Released	2006-03-07
Method	X-RAY DIFFRACTION 2.26 Å
Organisms	Mus musculus
Macromolecule	PHQ-VAL-ALA-ASP-CF0 (protein) XP-C repair complementing complex 58 kDa protein (protein) peptide N-glycanase (protein)
Unique Ligands	CL, ZN

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2F63 \| pdb_00002f63	Download File View File

Solution structure of HPPK in complex with inhibitor analogs AMPCPP and HP-1

Yan, H., Li, G.

To be published

Released	2006-01-17
Method	SOLUTION NMR
Organisms	Escherichia coli
Macromolecule	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase (protein)

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2F65 \| pdb_00002f65	Download File View File

Solution structure of HPPK in complex with inhibitor analog AMPCPP

Yan, H., Li, G.

To be published

Released	2006-01-17
Method	SOLUTION NMR
Organisms	Escherichia coli
Macromolecule	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase (protein)

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2G9F \| pdb_00002g9f	Download File View File

Crystal structure of intein-tagged mouse PNGase C-terminal domain

Zhou, X., Zhao, G., Wang, L., Li, G., Lennarz, W.J., Schindelin, H.

(2006) Proc Natl Acad Sci U S A 103: 17214-17219

Released	2006-10-24
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Mus musculus
Macromolecule	peptide N-glycanase (protein)
Unique Ligands	CL, GOL

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2G9G \| pdb_00002g9g	Download File View File

Crystal structure of His-tagged mouse PNGase C-terminal domain

Zhou, X., Zhao, G., Wang, L., Li, G., Lennarz, W.J., Schindelin, H.

(2006) Proc Natl Acad Sci U S A 103: 17214-17219

Released	2006-10-24
Method	X-RAY DIFFRACTION 2 Å
Organisms	Mus musculus
Macromolecule	peptide N-glycanase (protein)
Unique Ligands	GOL, SO4

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2HPJ \| pdb_00002hpj	Download File View File

Crystal structure of the PUB domain of mouse PNGase

Zhao, G., Zhou, X., Wang, L., Li, G., Lennarz, W., Schindelin, H.

(2007) Proc Natl Acad Sci U S A 104: 8785-8790

Released	2007-05-29
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Mus musculus
Macromolecule	PNGase (protein)
Unique Ligands	GOL

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2HPL \| pdb_00002hpl	Download File View File

Crystal structure of the mouse p97/PNGase complex

Zhao, G., Zhou, X., Wang, L., Li, G., Lennarz, W., Schindelin, H.

(2007) Proc Natl Acad Sci U S A 104: 8785-8790

Released	2007-05-29
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Mus musculus
Macromolecule	C-terminal of mouse p97/VCP (protein) PNGase (protein)

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2I74 \| pdb_00002i74	Download File View File

Crystal structure of mouse Peptide N-Glycanase C-terminal domain in complex with mannopentaose

Zhou, X., Zhao, G., Wang, L., Li, G., Lennarz, W.J., Schindelin, H.

(2006) Proc Natl Acad Sci U S A 103: 17214-17219

Released	2006-10-24
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Mus musculus
Macromolecule	PNGase (protein)
Unique Ligands	ACT, GOL
Unique branched monosaccharides	MAN