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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Michalczyk, R."

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Search Summary

This query matches 13 Structures.

Refinements

Structure Determination Methodology

experimental (13)

Scientific Name of Source Organism

	Lipomyces starkeyi (7)
	Homo sapiens (2)

Taxonomy

Eukaryota (9)

Experimental Method

	X-RAY DIFFRACTION (7)
	SOLUTION NMR (4)
	NEUTRON DIFFRACTION (2)

Polymer Entity Type

	Protein (9)
	DNA (4)

Refinement Resolution (Å)

	1.5 - 2.0 (6)
	2.0 - 2.5 (3)

Release Date

	2000 - 2004 (4)
	2015 - 2019 (9)

Enzyme Classification Name

	Transferases (6)
	Lyases (2)

Symmetry Type

	Cyclic (7)
	Asymmetric (2)

SCOP Classification

All beta proteins (2)

AllSelected

1 to 13 of 13 Structures

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1NGO \| pdb_00001ngo	Download File View File

NMR Structure of Putative 3' Terminator for B. Anthracis pagA Gene Coding Strand

Shiflett, P.R., Taylor-McCabe, K.J., Michalczyk, R., Silks, L.A., Gupta, G.

(2003) Biochemistry 42: 6078-6089

Released	2003-06-10
Method	SOLUTION NMR
Macromolecule	5'-D(CPTPCPTPTPTPTPTPGPTPAPAPGPAPAPAPTPAPCPAPAPGPGPAPGPAP*G)-3' (nucleic acid)

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1NGU \| pdb_00001ngu	Download File View File

NMR Structure of Putative 3'Terminator for B. Anthracis pagA Gene Noncoding Strand

Shiflett, P.R., Taylor-McCabe, K.J., Michalczyk, R., Silks, L.A., Gupta, G.

(2003) Biochemistry 42: 6078-6089

Released	2003-06-10
Method	SOLUTION NMR
Macromolecule	5'-D(CPTPCPTPCPCPTPTPGPTPAPTPTPTPCPTPTPAPCPAPAPAPAPAPGPAP*G)-3' (nucleic acid)

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1SS7 \| pdb_00001ss7	Download File View File

Compensating bends in a 16 base-pair DNA oligomer containing a T3A3 segment

McAteer, K., Aceves-Gaona, A., Michalczyk, R., Buchko, G.W., Isern, N.G., Silks, L.A., Miller, J.H., Kennedy, M.A.

(2004) Biopolymers 75: 497-511

Released	2004-12-07
Method	SOLUTION NMR
Macromolecule	5'-D(CPGPAPGPGPTPTPTPAPAPAPCPCPTPCPG)-3' (nucleic acid)

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1SSV \| pdb_00001ssv	Download File View File

Compensating bends in a 16 base-pair DNA oligomer containing a T3A3 segment

McAteer, K., Aceves-Gaona, A., Michalczyk, R., Buchko, G.W., Isern, N.G., Silks, L.A., Miller, J.H., Kennedy, M.A.

(2004) Biopolymers 75: 497-511

Released	2004-12-07
Method	SOLUTION NMR
Macromolecule	5'-D(CPGPAPGPGPTPTPTPAPAPAPCPCPTPCPG)-3' (nucleic acid)

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4Q49 \| pdb_00004q49	Download File View File

Room temperature neutron crystal structure of apo human carbonic anhydrase at pH 7.5

Fisher, S.Z., McKenna, R.

(2015) Proc Natl Acad Sci U S A 112: 5673-5678

Released	2015-02-25
Method	NEUTRON DIFFRACTION 1.8 Å
Organisms	Homo sapiens
Macromolecule	Carbonic anhydrase 2 (protein)
Unique Ligands	ZN

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4Y0J \| pdb_00004y0j	Download File View File

H/D exchanged human carbonic anhydrase II pH 6 room temperature neutron crystal structure.

Fisher, S.Z.

(2015) Proc Natl Acad Sci U S A 112: 5673-5678

Released	2015-04-22
Method	NEUTRON DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	Carbonic anhydrase 2 (protein)
Unique Ligands	ZN

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4YH5 \| pdb_00004yh5	Download File View File

Lipomyces starkeyi levoglucosan kinase bound to ADP and Manganese

Bacik, J.P.

(2015) J Biological Chem 290: 26638-26648

Released	2015-09-16
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Lipomyces starkeyi
Macromolecule	Levoglucosan kinase (protein)
Unique Ligands	ADP, MN, TRS

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4ZFV \| pdb_00004zfv	Download File View File

Lipomyces starkeyi levoglucosan kinase bound to ADP and magnesium.

Bacik, J.P.

(2015) J Biological Chem 290: 26638-26648

Released	2015-09-16
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Lipomyces starkeyi
Macromolecule	Levoglucosan kinase (protein)
Unique Ligands	ADP, MG, TRS

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4ZLU \| pdb_00004zlu	Download File View File

Lipomyces starkeyi levoglucosan kinase bound to levoglucosan, ADP and magnesium.

Bacik, J.P.

(2015) J Biological Chem 290: 26638-26648

Released	2015-09-16
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Lipomyces starkeyi
Macromolecule	Levoglucosan kinase (protein)
Unique Ligands	4PW, ADP, MG, TRS

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4ZXZ \| pdb_00004zxz	Download File View File

Crystal structure of a highly thermal stable but inactive levoglucosan kinase.

Bacik, J.P., Klesmith, J.R., Whitehead, T.A.

(2015) ACS Synth Biol 4: 1235-1243

Released	2015-09-23
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Lipomyces starkeyi
Macromolecule	Levoglucosan kinase (protein)

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5BSB \| pdb_00005bsb	Download File View File

Lipomyces starkeyi levoglucosan kinase bound to levoglucosan

Bacik, J.P.

(2015) J Biological Chem 290: 26638-26648

Released	2015-09-16
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Lipomyces starkeyi
Macromolecule	Levoglucosan kinase (protein)
Unique Ligands	4PW, SO4

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5BVC \| pdb_00005bvc	Download File View File

Crystal structure of Lipomyces starkeyi levoglucosan kinase bound to ADP, magnesium and levoglucosan in an alternate orientation.

Bacik, J.P.

(2015) J Biological Chem 290: 26638-26648

Released	2015-09-16
Method	X-RAY DIFFRACTION 2 Å
Organisms	Lipomyces starkeyi
Macromolecule	Levoglucosan kinase (protein)
Unique Ligands	4PW, ADP, MG

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5TKR \| pdb_00005tkr	Download File View File

Crystal structure of a Lipomyces starkeyi levoglucosan kinase G359R mutant

Bacik, J.P., Klesmith, J.R., Michalczyk, R., Whitehead, T.A.

(2017) Proc Natl Acad Sci U S A 114: 2265-2270

Released	2017-02-08
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Lipomyces starkeyi
Macromolecule	Levoglucosan kinase (protein)
Unique Ligands	ADP, K, MG, SO4

1 to 13 of 13 Structures

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

1NGO | pdb_00001ngo

NMR Structure of Putative 3' Terminator for B. Anthracis pagA Gene Coding Strand

1NGU | pdb_00001ngu

NMR Structure of Putative 3'Terminator for B. Anthracis pagA Gene Noncoding Strand

1SS7 | pdb_00001ss7

Compensating bends in a 16 base-pair DNA oligomer containing a T3A3 segment

1SSV | pdb_00001ssv

Compensating bends in a 16 base-pair DNA oligomer containing a T3A3 segment

4Q49 | pdb_00004q49

Room temperature neutron crystal structure of apo human carbonic anhydrase at pH 7.5

4Y0J | pdb_00004y0j

H/D exchanged human carbonic anhydrase II pH 6 room temperature neutron crystal structure.

4YH5 | pdb_00004yh5

Lipomyces starkeyi levoglucosan kinase bound to ADP and Manganese

4ZFV | pdb_00004zfv

Lipomyces starkeyi levoglucosan kinase bound to ADP and magnesium.

4ZLU | pdb_00004zlu

Lipomyces starkeyi levoglucosan kinase bound to levoglucosan, ADP and magnesium.

4ZXZ | pdb_00004zxz

Crystal structure of a highly thermal stable but inactive levoglucosan kinase.

5BSB | pdb_00005bsb

Lipomyces starkeyi levoglucosan kinase bound to levoglucosan

5BVC | pdb_00005bvc

Crystal structure of Lipomyces starkeyi levoglucosan kinase bound to ADP, magnesium and levoglucosan in an alternate orientation.

5TKR | pdb_00005tkr

Crystal structure of a Lipomyces starkeyi levoglucosan kinase G359R mutant

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

1NGO | pdb_00001ngo

1NGU | pdb_00001ngu

1SS7 | pdb_00001ss7

1SSV | pdb_00001ssv

4Q49 | pdb_00004q49

4Y0J | pdb_00004y0j

4YH5 | pdb_00004yh5

4ZFV | pdb_00004zfv

4ZLU | pdb_00004zlu

4ZXZ | pdb_00004zxz

5BSB | pdb_00005bsb

5BVC | pdb_00005bvc

5TKR | pdb_00005tkr