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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Miller, B."

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Search Summary

This query matches 12 Structures.

Refinements

Structure Determination Methodology

experimental (12)

Scientific Name of Source Organism

	Homo sapiens (10)
	Serratia sp. FS14 (6)
	Neisseria gonorrhoeae 35/02 (2)
	Escherichia coli (1)

Taxonomy

	Eukaryota (10)
	Bacteria (9)

Experimental Method

X-RAY DIFFRACTION (12)

Polymer Entity Type

Protein (12)

Refinement Resolution (Å)

	1.0 - 1.5 (3)
	1.5 - 2.0 (8)
	2.5 - 3.0 (1)

Release Date

	2005 - 2009 (3)
	2020 - 2024 (7)
	2025 - 2029 (2)

Enzyme Classification Name

Hydrolases (2)

Symmetry Type

Asymmetric (12)

SCOP Classification

All beta proteins (3)

AllSelected

1 to 12 of 12 Structures

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3HC0 \| pdb_00003hc0	Download File View File

BHA10 IgG1 wild-type Fab - antibody directed at human LTBR

Arndt, J.W., Jordan, J.L., Lugovskoy, A., Wang, D.

(2009) Proteins 77: 832-841

Released	2009-08-04
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Homo sapiens
Macromolecule	IMMUNOGLOBULIN IGG1 FAB, HEAVY CHAIN (protein) IMMUNOGLOBULIN IGG1 FAB, LIGHT CHAIN (protein)
Unique Ligands	ACT

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3HC3 \| pdb_00003hc3	Download File View File

BHA10 IgG1 Fab double mutant variant - antibody directed at human LTBR

Arndt, J.W., Jordan, J.L., Lugovskoy, A., Wang, D.

(2009) Proteins 77: 832-841

Released	2009-08-04
Method	X-RAY DIFFRACTION 1.72 Å
Organisms	Homo sapiens
Macromolecule	IMMUNOGLOBULIN IGG1 FAB, HEAVY CHAIN (protein) IMMUNOGLOBULIN IGG1 FAB, LIGHT CHAIN (protein)
Unique Ligands	ACT, ZN

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3HC4 \| pdb_00003hc4	Download File View File

BHA10 IgG1 Fab quadruple mutant variant - antibody directed at human LTBR

Arndt, J.W., Jordan, J.L., Lugovskoy, A., Wang, D.

(2009) Proteins 77: 832-841

Released	2009-08-04
Method	X-RAY DIFFRACTION 1.62 Å
Organisms	Homo sapiens
Macromolecule	IMMUNOGLOBULIN IGG1 FAB, HEAVY CHAIN (protein) IMMUNOGLOBULIN IGG1 FAB, LIGHT CHAIN (protein)
Unique Ligands	ACT, ZN

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8G3S \| pdb_00008g3s	Download File View File

MBP-Mcl1 in complex with ligand 11

Miller, B.R., Shaffer, P.

(2023) J Med Chem 66: 6122-6148

Released	2023-05-17
Method	X-RAY DIFFRACTION 1.4 Å
Organisms	Homo sapiens Serratia sp. FS14
Macromolecule	Maltodextrin-binding protein, Induced myeloid leukemia cell differentiation protein Mcl-1 chimera (protein)
Unique Ligands	FMT, YLT
Unique branched monosaccharides	GLC

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8G3T \| pdb_00008g3t	Download File View File

MBP-Mcl1 in complex with ligand 12

Miller, B.R., Shaffer, P.

(2023) J Med Chem 66: 6122-6148

Released	2023-05-17
Method	X-RAY DIFFRACTION 1.83 Å
Organisms	Homo sapiens Serratia sp. FS14
Macromolecule	Maltodextrin-binding protein, Induced myeloid leukemia cell differentiation protein Mcl-1 chimera (protein)
Unique Ligands	EDO, FMT, YLK
Unique branched monosaccharides	GLC

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8G3U \| pdb_00008g3u	Download File View File

MBP-Mcl1 in complex with ligand 21

Miller, B.R., Shaffer, P.

(2023) J Med Chem 66: 6122-6148

Released	2023-05-17
Method	X-RAY DIFFRACTION 1.94 Å
Organisms	Homo sapiens Serratia sp. FS14
Macromolecule	Maltodextrin-binding protein, Induced myeloid leukemia cell differentiation protein Mcl-1 chimera (protein)
Unique Ligands	EDO, YKT
Unique branched monosaccharides	GLC

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8G3W \| pdb_00008g3w	Download File View File

MBP-Mcl1 in complex with ligand 28

Miller, B.R., Shaffer, P.

(2023) J Med Chem 66: 6122-6148

Released	2023-05-17
Method	X-RAY DIFFRACTION 1.78 Å
Organisms	Homo sapiens Serratia sp. FS14
Macromolecule	Maltodextrin-binding protein, Induced myeloid leukemia cell differentiation protein Mcl-1 chimera (protein)
Unique Ligands	EDO, PEG, YKX
Unique branched monosaccharides	GLC

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8G3X \| pdb_00008g3x	Download File View File

MBP-Mcl1 in complex with ligand 32

Miller, B.R., Shaffer, P.

(2023) J Med Chem 66: 6122-6148

Released	2023-05-17
Method	X-RAY DIFFRACTION 1.46 Å
Organisms	Homo sapiens Serratia sp. FS14
Macromolecule	Maltodextrin-binding protein, Induced myeloid leukemia cell differentiation protein Mcl-1 chimera (protein)
Unique Ligands	EDO, YLF
Unique branched monosaccharides	GLC

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8G3Y \| pdb_00008g3y	Download File View File

MBP-Mcl1 in complex with ligand 34

Miller, B.R., Shaffer, P.

(2023) J Med Chem 66: 6122-6148

Released	2023-05-17
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Homo sapiens Serratia sp. FS14
Macromolecule	Maltodextrin-binding protein, Induced myeloid leukemia cell differentiation protein Mcl-1 chimera (protein)
Unique Ligands	CL, EDO, PEG, YKL
Unique branched monosaccharides	GLC

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8SVY \| pdb_00008svy	Download File View File

MBP-Mcl1 in complex with ligand 10

Miller, B.R., Shaffer, P.

(2023) ACS Med Chem Lett 14: 955-961

Released	2023-08-09
Method	X-RAY DIFFRACTION 1.47 Å
Organisms	Escherichia coli Homo sapiens
Macromolecule	Maltose/maltodextrin-binding periplasmic protein, Induced myeloid leukemia cell differentiation protein Mcl-1 chimera (protein)
Unique Ligands	EDO, GOL, WUC
Unique branched monosaccharides	GLC

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9MCZ \| pdb_00009mcz	Download File View File

Crystal structure of the transpeptidase domain of PBP2 from the Neisseria gonorrhoeae cephalosporin decreased susceptibility strain 35/02 in complex with boronate inhibitor VNRX-6884

Stratton, C.M., Bala, S., Davies, C.

(2024) bioRxiv

Released	2025-01-22
Method	X-RAY DIFFRACTION 1.89 Å
Organisms	Neisseria gonorrhoeae 35/02
Macromolecule	Penicillin-binding protein 2 (protein)
Unique Ligands	A1BJC

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9MD0 \| pdb_00009md0	Download File View File

Crystal structure of the transpeptidase domain of PBP2 from the Neisseria gonorrhoeae cephalosporin decreased susceptibility strain 35/02 in complex with boronate inhibitor VNRX-6752

Stratton, C.M., Bala, S., Davies, C.

(2024) bioRxiv

Released	2025-01-22
Method	X-RAY DIFFRACTION 2.613 Å
Organisms	Neisseria gonorrhoeae 35/02
Macromolecule	Penicillin-binding protein 2 (protein)
Unique Ligands	A1BJB

1 to 12 of 12 Structures

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

3HC0 | pdb_00003hc0

BHA10 IgG1 wild-type Fab - antibody directed at human LTBR

3HC3 | pdb_00003hc3

BHA10 IgG1 Fab double mutant variant - antibody directed at human LTBR

3HC4 | pdb_00003hc4

BHA10 IgG1 Fab quadruple mutant variant - antibody directed at human LTBR

8G3S | pdb_00008g3s

MBP-Mcl1 in complex with ligand 11

8G3T | pdb_00008g3t

MBP-Mcl1 in complex with ligand 12

8G3U | pdb_00008g3u

MBP-Mcl1 in complex with ligand 21

8G3W | pdb_00008g3w

MBP-Mcl1 in complex with ligand 28

8G3X | pdb_00008g3x

MBP-Mcl1 in complex with ligand 32

8G3Y | pdb_00008g3y

MBP-Mcl1 in complex with ligand 34

8SVY | pdb_00008svy

MBP-Mcl1 in complex with ligand 10

9MCZ | pdb_00009mcz

Crystal structure of the transpeptidase domain of PBP2 from the Neisseria gonorrhoeae cephalosporin decreased susceptibility strain 35/02 in complex with boronate inhibitor VNRX-6884

9MD0 | pdb_00009md0

Crystal structure of the transpeptidase domain of PBP2 from the Neisseria gonorrhoeae cephalosporin decreased susceptibility strain 35/02 in complex with boronate inhibitor VNRX-6752

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

3HC0 | pdb_00003hc0

3HC3 | pdb_00003hc3

3HC4 | pdb_00003hc4

8G3S | pdb_00008g3s

8G3T | pdb_00008g3t

8G3U | pdb_00008g3u

8G3W | pdb_00008g3w

8G3X | pdb_00008g3x

8G3Y | pdb_00008g3y

8SVY | pdb_00008svy

9MCZ | pdb_00009mcz

9MD0 | pdb_00009md0