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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Neckers, L."

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Search Summary

This query matches 208 Structures.

Refinements

Structure Determination Methodology

experimental (208)

Scientific Name of Source Organism

	Homo sapiens (136)
	synthetic construct (15)
	Severe acute respiratory syndrome coronavirus 2 (14)
	Mus musculus (10)
	Aequorea victoria (6)
	Bos taurus (6)
	Entacmaea quadricolor (6)
	Leptospira interrogans (6)
	Lama glama (5)
	Magallana gigas (4)

More...

Taxonomy

	Eukaryota (170)
	Riboviria (22)
	Bacteria (21)
	other sequences (15)
	Archaea (2)
	Eukaryota (eukaryotes) (2)
	Duplodnaviria (1)

Experimental Method

	X-RAY DIFFRACTION (155)
	ELECTRON MICROSCOPY (36)
	SOLUTION NMR (17)

Polymer Entity Type

	Protein (208)
	DNA (4)
	RNA (3)

Refinement Resolution (Å)

	0.5 - 1.0 (1)
	1.0 - 1.5 (15)
	1.5 - 2.0 (38)
	2.0 - 2.5 (60)
	2.5 - 3.0 (24)
	3.0 - 3.5 (33)
	3.5 - 4.0 (19)
	> 4.5 (1)

Release Date

	2000 - 2004 (1)
	2005 - 2009 (24)
	2010 - 2014 (40)
	2015 - 2019 (18)
	2020 - 2024 (122)
	2025 - 2029 (3)

Enzyme Classification Name

	Transferases (62)
	Hydrolases (32)
	Oxidoreductases (10)
	Ligases (2)
	Isomerases (3)
	Lyases (2)

Membrane Protein Annotation

	PDBTM (16)
	OPM (14)
	mpstruc (11)
	MemProtMD (12)

Symmetry Type

	Asymmetric (145)
	Cyclic (61)
	Dihedral (5)

SCOP Classification

	Alpha and beta proteins (a+b) (22)
	All beta proteins (10)
	Artifacts (14)
	Membrane and cell surface proteins and peptides (12)
	All alpha proteins (7)
	Alpha and beta proteins (a/b) (8)
	Small proteins (2)
	Peptides (1)

AllSelected

1 to 25 of 208 Structures

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1SV2 \| pdb_00001sv2	Download File View File

Crystal Structure of Peptide Deformylase from Leptospira Interrogans (LiPDF) at pH7.5

Zhou, Z., Song, X., Li, Y., Gong, W.

(2005) J Biological Chem 280: 42391-42396

Released	2005-08-09
Method	X-RAY DIFFRACTION 3 Å
Organisms	Leptospira interrogans
Macromolecule	Peptide deformylase (protein)
Unique Ligands	DTT, FMT, ZN

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1SZZ \| pdb_00001szz	Download File View File

Crystal structure of peptide deformylase from Leptospira Interrogans complexed with inhibitor actinonin

Zhou, Z., Song, X., Li, Y., Gong, W.

(2005) J Biological Chem 280: 42391-42396

Released	2005-08-16
Method	X-RAY DIFFRACTION 3.3 Å
Organisms	Leptospira interrogans
Macromolecule	Peptide deformylase (protein)
Unique Ligands	BB2, ZN

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1VEV \| pdb_00001vev	Download File View File

Crystal structure of peptide deformylase from Leptospira Interrogans (LiPDF) at pH6.5

Zhou, Z., Song, X., Li, Y., Gong, W.

(2005) J Biological Chem 280: 42391-42396

Released	2005-08-23
Method	X-RAY DIFFRACTION 2.51 Å
Organisms	Leptospira interrogans
Macromolecule	Peptide deformylase (protein)
Unique Ligands	FMT, MES, ZN

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1VEY \| pdb_00001vey	Download File View File

Crystal Structure of Peptide Deformylase from Leptospira Interrogans (LiPDF) at pH7.0

Zhou, Z., Song, X., Li, Y., Gong, W.

(2005) J Biological Chem 280: 42391-42396

Released	2005-08-23
Method	X-RAY DIFFRACTION 3.3 Å
Organisms	Leptospira interrogans
Macromolecule	Peptide deformylase (protein)
Unique Ligands	EPE, ZN

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1VEZ \| pdb_00001vez	Download File View File

Crystal Structure of Peptide Deformylase from Leptospira Interrogans(LiPDF) at pH8.0

Zhou, Z., Song, X., Li, Y., Gong, W.

(2005) J Biological Chem 280: 42391-42396

Released	2005-08-23
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Leptospira interrogans
Macromolecule	Peptide deformylase (protein)
Unique Ligands	FMT, TRS, ZN

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1Y6H \| pdb_00001y6h	Download File View File

Crystal structure of LIPDF

Zhou, Z., Song, X., Li, Y., Gong, W.

(2004) J Mol Biology 339: 207-215

Released	2004-12-21
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Leptospira interrogans
Macromolecule	Peptide deformylase (protein)
Unique Ligands	FMT, GLY, ZN

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2B3O \| pdb_00002b3o	Download File View File

Crystal structure of human tyrosine phosphatase SHP-1

Yang, J., Liu, L., He, D., Song, X., Liang, X., Zhao, Z.J., Zhou, G.W.

(2003) J Biological Chem 278: 6516-6520

Released	2005-10-25
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Homo sapiens
Macromolecule	Tyrosine-protein phosphatase, non-receptor type 6 (protein)

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2B3R \| pdb_00002b3r	Download File View File

Crystal structure of the C2 domain of class II phosphatidylinositide 3-kinase C2

Liu, L., Song, X., He, D., Komma, C., Kita, A., Verbasius, J.V., Bellamy, H., Miki, K., Czech, M.P., Zhou, G.W.

(2006) J Biological Chem 281: 4254-4260

Released	2005-12-13
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Mus musculus
Macromolecule	Phosphatidylinositol-4-phosphate 3-kinase C2 domain-containing alpha polypeptide (protein)
Unique Ligands	SO4

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2F7E \| pdb_00002f7e	Download File View File

PKA complexed with (S)-2-(1H-Indol-3-yl)-1-(5-isoquinolin-6-yl-pyridin-3-yloxymethyl-etylamine

Stoll, V.S.

(2006) Bioorg Med Chem Lett 16: 2000-2007

Released	2006-06-27
Method	X-RAY DIFFRACTION 2 Å
Organisms	Bos taurus Homo sapiens
Macromolecule	PKI inhibitory peptide (protein) cAMP-dependent protein kinase, alpha-catalytic subunit (protein)
Unique Ligands	2EA

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2F7Z \| pdb_00002f7z	Download File View File

Protein Kinase A bound to (R)-1-(1H-Indol-3-ylmethyl)-2-(2-pyridin-4-yl-[1,7]naphtyridin-5-yloxy)-ehylamine

Li, Q., Woods, K.W., Thomas, S., Zhu, G.D., Packard, G., Fisher, J., Li, T., Gong, J., Dinges, J., Song, X., Abrams, J., Luo, Y., Johnson, E.F., Shi, Y., Liu, X., Klinghofer, V., Des Jong, R., Oltersdorf, T., Stoll, V.S., Jakob, C.G., Rosenberg, S.H., Giranda, V.L.

(2006) Bioorg Med Chem Lett 16: 2000-2007

Released	2006-06-27
Method	X-RAY DIFFRACTION 3 Å
Organisms	Bos taurus Oryctolagus cuniculus
Macromolecule	PKI, inhibitory peptide (protein) cAMP-dependent protein kinase, alpha-catalytic subunit (protein)
Unique Ligands	6EA

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2JOO \| pdb_00002joo	Download File View File

The NMR Solution Structure of Recombinant RGD-hirudin

Song, X., Mo, W., Liu, X., Yan, X., Song, H., Dai, L.

(2007) Biochem Biophys Res Commun 360: 103-108

Released	2008-03-18
Method	SOLUTION NMR
Organisms	Hirudo medicinalis
Macromolecule	Hirudin variant-1 (protein)

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2LHV \| pdb_00002lhv	Download File View File

Mucin sequence based on MUC2 Mucin glycoprotein tandem repeat

Borgert, A., Heimburg-Molinaro, J., Lasanajak, Y., Ju, T., Liu, M., Thompson, P., Ragupathi, G., Barany, G., Cummings, R., Smith, D., Live, D.

(2012) ACS Chem Biol 7: 1031-1039

Released	2012-04-04
Method	SOLUTION NMR
Macromolecule	MUC2 Mucin Domain Peptide (protein)

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2LHW \| pdb_00002lhw	Download File View File

Tri-O-GalNAc glycosylated Mucin sequence based on MUC2 Mucin glycoprotein tandem repeat

Borgert, A., Heimburg-Molinaro, J., Lasanajak, Y., Ju, T., Liu, M., Thompson, P., Ragupathi, G., Barany, G., Cummings, R., Smith, D., Live, D.

(2012) ACS Chem Biol 7: 1031-1039

Released	2012-04-04
Method	SOLUTION NMR
Organisms	synthetic construct
Macromolecule	MUC2 Mucin Domain Peptide (protein)
Unique Ligands	A2G

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2LHX \| pdb_00002lhx	Download File View File

Di-O-GalNAc glycosylated Mucin sequence based on MUC2 Mucin glycoprotein tandem repeat

Borgert, A., Heimburg-Molinaro, J., Lasanajak, Y., Ju, T., Liu, M., Thompson, P., Ragupathi, G., Barany, G., Cummings, R., Smith, D., Live, D.

(2012) ACS Chem Biol 7: 1031-1039

Released	2012-04-04
Method	SOLUTION NMR
Organisms	synthetic construct
Macromolecule	MUC2 Mucin Domain Peptide (protein)
Unique Ligands	A2G

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2LHY \| pdb_00002lhy	Download File View File

Di-O-GalNAc glycosylated Mucin sequence based on MUC2 Mucin glycoprotein tandem repeat

Borgert, A., Heimburg-Molinaro, J., Lasanajak, Y., Ju, T., Liu, M., Thompson, P., Ragupathi, G., Barany, G., Cummings, R., Smith, D., Live, D.

(2012) ACS Chem Biol 7: 1031-1039

Released	2012-04-04
Method	SOLUTION NMR
Organisms	synthetic construct
Macromolecule	MUC2 Mucin Domain Peptide (protein)
Unique Ligands	A2G

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2LHZ \| pdb_00002lhz	Download File View File

Di-O-GalNAc glycosylated Mucin sequence based on MUC2 Mucin glycoprotein tandem repeat

Borgert, A., Heimburg-Molinaro, J., Lasanajak, Y., Ju, T., Liu, M., Thompson, P., Ragupathi, G., Barany, G., Cummings, R., Smith, D., Live, D.

(2012) ACS Chem Biol 7: 1031-1039

Released	2012-04-04
Method	SOLUTION NMR
Organisms	synthetic construct
Macromolecule	MUC2 Mucin Domain Peptide (protein)
Unique Ligands	A2G

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2LI0 \| pdb_00002li0	Download File View File

Mono-O-GalNAc glycosylated Mucin sequence based on MUC2 Mucin glycoprotein tandem repeat

Borgert, A., Heimburg-Molinaro, J., Lasanajak, Y., Ju, T., Liu, M., Thompson, P., Ragupathi, G., Barany, G., Cummings, R., Smith, D., Live, D.

(2012) ACS Chem Biol 7: 1031-1039

Released	2012-04-04
Method	SOLUTION NMR
Organisms	synthetic construct
Macromolecule	MUC2 Mucin Domain Peptide (protein)
Unique Ligands	A2G

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2LI1 \| pdb_00002li1	Download File View File

Mono-O-GalNAc glycosylated Mucin sequence based on MUC2 Mucin glycoprotein tandem repeat

Borgert, A., Heimburg-Molinaro, J., Lasanajak, Y., Ju, T., Liu, M., Thompson, P., Ragupathi, G., Barany, G., Cummings, R., Smith, D., Live, D.

(2012) ACS Chem Biol 7: 1031-1039

Released	2012-04-04
Method	SOLUTION NMR
Organisms	synthetic construct
Macromolecule	MUC2 Mucin Domain Peptide (protein)
Unique Ligands	A2G

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2LI2 \| pdb_00002li2	Download File View File

Mono-O-GalNAc glycosylated Mucin sequence based on MUC2 Mucin glycoprotein tandem repeat

Borgert, A., Heimburg-Molinaro, J., Lasanajak, Y., Ju, T., Liu, M., Thompson, P., Ragupathi, G., Barany, G., Cummings, R., Smith, D., Live, D.

(2012) ACS Chem Biol 7: 1031-1039

Released	2012-04-04
Method	SOLUTION NMR
Organisms	synthetic construct
Macromolecule	MUC2 Mucin Domain Peptide (protein)
Unique Ligands	A2G

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2MDT \| pdb_00002mdt	Download File View File

a PilT N-terminus domain protein SSO1118 from hyperthemophilic archaeon Sulfolobus solfataricus P2

Xuan, J., Song, X., Wang, J., Feng, Y.

(2013) J Biomol NMR 57: 363-368

Released	2013-11-20
Method	SOLUTION NMR
Organisms	Saccharolobus solfataricus P2
Macromolecule	Putative uncharacterized protein (protein)

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2MMP \| pdb_00002mmp	Download File View File

Solution structure of a ribosomal protein

Feng, Y.

(2014) Biochem Biophys Res Commun 450: 67-72

Released	2014-06-11
Method	SOLUTION NMR
Organisms	Saccharolobus solfataricus P2
Macromolecule	Uncharacterized protein (protein)

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2O1Y \| pdb_00002o1y	Download File View File

Solution structure of the anti-apoptotic protein Bcl-xL in complex with an acyl-sulfonamide-based ligand

Bruncko, M., Oost, T.K., Belli, B.A., Ding, H., Joseph, M.K., Kunzer, A., Martineau, D., McClellan, W.J., Mitten, M., Ng, S.C., Nimmer, P.M., Oltersdorf, T., Park, C.M., Petros, A.M., Shoemaker, A.R., Song, X., Wang, X., Wendt, M.D., Zhang, H., Fesik, S.W., Rosenberg, S.H., Elmore, S.W.

(2007) J Med Chem 50: 641-662

Released	2007-02-27
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Apoptosis regulator Bcl-X (protein)
Unique Ligands	43B

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2O21 \| pdb_00002o21	Download File View File

Solution structure of the anti-apoptotic protein Bcl-2 in complex with an acyl-sulfonamide-based ligand

(2007) J Med Chem 50: 641-662

Released	2007-02-27
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Apoptosis regulator Bcl-2 (protein)
Unique Ligands	43B

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2O22 \| pdb_00002o22	Download File View File

Solution structure of the anti-apoptotic protein Bcl-2 in complex with an acyl-sulfonamide-based ligand

(2007) J Med Chem 50: 641-662

Released	2007-02-27
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Apoptosis regulator Bcl-2 (protein)
Unique Ligands	LIU

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2O2F \| pdb_00002o2f	Download File View File

Solution structure of the anti-apoptotic protein Bcl-2 in complex with an acyl-sulfonamide-based ligand

(2007) J Med Chem 50: 641-662

Released	2007-02-27
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Apoptosis regulator Bcl-2 (protein)
Unique Ligands	LI0

1 to 25 of 208 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1SV2 | pdb_00001sv2

1SZZ | pdb_00001szz

1VEV | pdb_00001vev

1VEY | pdb_00001vey

1VEZ | pdb_00001vez

1Y6H | pdb_00001y6h

2B3O | pdb_00002b3o

2B3R | pdb_00002b3r

2F7E | pdb_00002f7e

2F7Z | pdb_00002f7z

2JOO | pdb_00002joo

2LHV | pdb_00002lhv

2LHW | pdb_00002lhw

2LHX | pdb_00002lhx

2LHY | pdb_00002lhy

2LHZ | pdb_00002lhz

2LI0 | pdb_00002li0

2LI1 | pdb_00002li1

2LI2 | pdb_00002li2

2MDT | pdb_00002mdt

2MMP | pdb_00002mmp

2O1Y | pdb_00002o1y

2O21 | pdb_00002o21

2O22 | pdb_00002o22

2O2F | pdb_00002o2f