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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "O'Connell, J.D."

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Search Summary

This query matches 30 Structures.

Refinements

Structure Determination Methodology

experimental (30)

Scientific Name of Source Organism

	Saccharomyces cerevisiae YJM789 (16)
	Escherichia coli K-12 (4)
	Cupriavidus metallidurans CH34 (3)
	Homo sapiens (3)
	Candida albicans SC5314 (1)
	Nakaseomyces glabratus CBS 138 (1)
	Saccharomyces cerevisiae (1)
	Saccharomyces cerevisiae S288C (1)

Taxonomy

	Eukaryota (23)
	Bacteria (7)

Experimental Method

X-RAY DIFFRACTION (30)

Polymer Entity Type

	Protein (30)
	RNA (3)

Refinement Resolution (Å)

	1.5 - 2.0 (3)
	2.0 - 2.5 (20)
	2.5 - 3.0 (3)
	3.0 - 3.5 (2)
	3.5 - 4.0 (2)

Release Date

	2010 - 2014 (8)
	2015 - 2019 (22)

Enzyme Classification Name

	Oxidoreductases (20)
	Transferases (4)

Membrane Protein Annotation

	PDBTM (25)
	MemProtMD (23)
	mpstruc (7)
	OPM (4)

Symmetry Type

	Asymmetric (21)
	Cyclic (10)
	Dihedral (1)

SCOP Classification

	Artifacts (4)
	Alpha and beta proteins (a+b) (1)
	Membrane and cell surface proteins and peptides (4)

AllSelected

1 to 25 of 30 Structures

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Explore in 3D

3LNN \| pdb_00003lnn	Download File View File

Crystal structure of ZneB from Cupriavidus metallidurans

Lee, J.K., De Angelis, F., Miercke, L.J., Stroud, R.M., Vandenbussche, G., Center for Structures of Membrane Proteins (CSMP)

(2010) Proc Natl Acad Sci U S A 107: 11038-11043

Released	2010-06-30
Method	X-RAY DIFFRACTION 2.796 Å
Organisms	Cupriavidus metallidurans CH34
Macromolecule	Membrane fusion protein (MFP) heavy metal cation efflux ZneB (CzcB-like) (protein)
Unique Ligands	ZN

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3NK5 \| pdb_00003nk5	Download File View File

Crystal structure of AqpZ mutant F43W

Savage, D.F., O'Connell, J.D., Stroud, R.M., Finer-Moore, J.S.

(2010) Proc Natl Acad Sci U S A 107: 17164-17169

Released	2010-08-11
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Escherichia coli K-12
Macromolecule	Aquaporin Z (protein)
Unique Ligands	BOG

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3NKA \| pdb_00003nka	Download File View File

Crystal structure of AqpZ H174G,T183F

Savage, D.F., O'Connell III, J.D., Finer-Moore, J., Stroud, R.M.

(2010) Proc Natl Acad Sci U S A 107: 17164-17169

Released	2010-11-03
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Escherichia coli K-12
Macromolecule	Aquaporin Z (protein)
Unique Ligands	BOG, GOL

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3NKC \| pdb_00003nkc	Download File View File

Crystal structure of AqpZ F43W,H174G,T183F

Savage, D.F., O'Connell III, J.D., Finer-Moore, J., Stroud, R.M.

(2010) Proc Natl Acad Sci U S A 107: 17164-17169

Released	2010-11-03
Method	X-RAY DIFFRACTION 3.1 Å
Organisms	Escherichia coli K-12
Macromolecule	Aquaporin Z (protein)
Unique Ligands	BOG

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4ISK \| pdb_00004isk	Download File View File

Crystal structure of E.coli thymidylate synthase with dUMP and the BGC 945 inhibitor

Tochowicz, A., Finer-Moore, J., Stroud, R.M.

(2013) J Med Chem 56: 5446-5455

Released	2013-12-25
Method	X-RAY DIFFRACTION 1.752 Å
Organisms	Escherichia coli K-12
Macromolecule	Thymidylate synthase (protein)
Unique Ligands	1JY, MG, UMC, UMP

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4K0E \| pdb_00004k0e	Download File View File

X-ray crystal structure of a heavy metal efflux pump, crystal form II

Pak, J.E., Ngonlong Ekende, E., Vandenbussche, G., Stroud, R.M., Center for Structures of Membrane Proteins (CSMP)

(2013) Proc Natl Acad Sci U S A 110: 18484-18489

Released	2013-10-16
Method	X-RAY DIFFRACTION 3.713 Å
Organisms	Cupriavidus metallidurans CH34
Macromolecule	Heavy metal cation tricomponent efflux pump ZneA(CzcA-like) (protein)
Unique Ligands	ZN

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4K0J \| pdb_00004k0j	Download File View File

X-ray crystal structure of a heavy metal efflux pump, crystal form I

Pak, J.E., Stroud, R.M., Ngonlong Ekende, E., Vandenbussche, G., Center for Structures of Membrane Proteins (CSMP)

(2013) Proc Natl Acad Sci U S A 110: 18484-18489

Released	2013-10-16
Method	X-RAY DIFFRACTION 3 Å
Organisms	Cupriavidus metallidurans CH34
Macromolecule	Heavy metal cation tricomponent efflux pump ZneA(CzcA-like) (protein)
Unique Ligands	ZN

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4LXJ \| pdb_00004lxj	Download File View File

Saccharomyces cerevisiae lanosterol 14-alpha demethylase with lanosterol bound

Monk, B.C., Tomasiak, T.M., Keniya, M.V., Huschmann, F.U., Tyndall, J.D.A., O'Connell III, J.D., Cannon, R.D., McDonald, J., Rodriguez, A., Finer-Moore, J., Stroud, R.M.

(2014) Proc Natl Acad Sci U S A 111: 3865-3870

Released	2014-01-29
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	Lanosterol 14-alpha demethylase (protein)
Unique Ligands	HEM, LAN, OXY

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4ZDY \| pdb_00004zdy	Download File View File

Saccharomyces cerevisiae CYP51 (Lanosterol 14-alpha demethylase) Y140F mutant complexed with itraconazole

Sagatova, A., Keniya, M.V., Wilson, R.K., Tyndall, J.D.A., Monk, B.C.

(2016) Sci Rep 6: 26213-26213

Released	2016-03-30
Method	X-RAY DIFFRACTION 2.02 Å
Organisms	Saccharomyces cerevisiae YJM789
Macromolecule	Lanosterol 14-alpha demethylase (protein)
Unique Ligands	1YN, HEM

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4ZDZ \| pdb_00004zdz	Download File View File

Saccharomyces cerevisiae CYP51 (Lanosterol 14-alpha demethylase) Y140F mutant complexed with fluconazole

Sagatova, A., Keniya, M.V., Wilson, R.K., Tyndall, J.D.A., Monk, B.C.

(2016) Sci Rep 6: 26213-26213

Released	2016-03-30
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Saccharomyces cerevisiae YJM789
Macromolecule	Lanosterol 14-alpha demethylase (protein)
Unique Ligands	HEM, TPF

Explore in 3D

4ZE0 \| pdb_00004ze0	Download File View File

Saccharomyces cerevisiae CYP51 (Lanosterol 14-alpha demethylase) Y140F mutant complexed with Voriconazole

Sagatova, A., Keniya, M.V., Wilson, R., Tyndall, J.D.A., Monk, B.C.

(2016) Sci Rep 6: 26213-26213

Released	2016-03-30
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Saccharomyces cerevisiae YJM789
Macromolecule	Lanosterol 14-alpha demethylase (protein)
Unique Ligands	HEM, VOR

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4ZE1 \| pdb_00004ze1	Download File View File

Saccharomyces cerevisiae CYP51 Y140F mutant complexed with posaconazole in the active site

Sagatova, A., Keniya, M.V., Wilson, R., Tyndall, J.D.A., Monk, B.C.

(2016) Sci Rep 6: 26213-26213

Released	2016-03-30
Method	X-RAY DIFFRACTION 2.05 Å
Organisms	Saccharomyces cerevisiae YJM789
Macromolecule	Lanosterol 14-alpha demethylase (protein)
Unique Ligands	HEM, X2N

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4ZE2 \| pdb_00004ze2	Download File View File

Saccharomyces cerevisiae CYP51 (Lanosterol 14-alpha demethylase) Y140H mutant complexed with itraconazole

Sagatova, A., Keniya, M.V., Wilson, R., Monk, B.C., Tyndall, J.D.A.

(2016) Sci Rep 6: 26213-26213

Released	2016-03-30
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Saccharomyces cerevisiae YJM789
Macromolecule	Lanosterol 14-alpha demethylase (protein)
Unique Ligands	1YN, HEM

Explore in 3D

4ZE3 \| pdb_00004ze3	Download File View File

Saccharomyces cerevisiae CYP51 (Lanosterol 14-alpha demethylase) Y140H mutant complexed with fluconazole

Sagatova, A., Keniya, M.V., Wilson, R., Monk, B.C., Tyndall, J.D.A.

(2016) Sci Rep 6: 26213-26213

Released	2016-03-30
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Saccharomyces cerevisiae YJM789
Macromolecule	Lanosterol 14-alpha demethylase (protein)
Unique Ligands	HEM, TPF

Explore in 3D

5CCB \| pdb_00005ccb	Download File View File

Crystal structure of human m1A58 methyltransferase in a complex with tRNA3Lys and SAH

Finer-Moore, J., Czudnochowski, N., O'Connell III, J.D., Wang, A.L., Stroud, R.M.

(2015) J Mol Biology 427: 3862-3876

Released	2015-11-04
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	tRNA (adenine(58)-N(1))-methyltransferase catalytic subunit TRMT61A (protein) tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6 (protein) tRNA3Lys (nucleic acid)
Unique Ligands	NA, SAH

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5CCX \| pdb_00005ccx	Download File View File

Structure of the product complex of tRNA m1A58 methyltransferase with tRNA3Lys as substrate

Finer-Moore, J., Czudnochowski, N., O'Connell III, J.D., Wang, A.L., Stroud, R.M.

(2015) J Mol Biology 427: 3862-3876

Released	2015-11-04
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens
Macromolecule	tRNA (adenine(58)-N(1))-methyltransferase catalytic subunit TRMT61A (protein) tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6 (protein) tRNA3Lys (nucleic acid)
Unique Ligands	NA, SAH

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5CD1 \| pdb_00005cd1	Download File View File

Structure of an asymmetric tetramer of human tRNA m1A58 methyltransferase in a complex with SAH and tRNA3Lys

Finer-Moore, J., Czudnochowski, N., O'Connell III, J.D., Wang, A.L., Stroud, R.M.

(2015) J Mol Biology 427: 3862-3876

Released	2015-11-04
Method	X-RAY DIFFRACTION 3.6 Å
Organisms	Homo sapiens
Macromolecule	tRNA (adenine(58)-N(1))-methyltransferase catalytic subunit TRMT61A (protein) tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6 (protein) tRNA3Lys (nucleic acid)
Unique Ligands	NA, SAH

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5EQB \| pdb_00005eqb	Download File View File

Crystal structure of lanosterol 14-alpha demethylase with intact transmembrane domain bound to itraconazole

Monk, B.C., Tomasiak, T.M., Keniya, M.V., Huschmann, F.U., Tyndall, J.D.A., O'Connell III, J.D., Cannon, R.D., Finer-Morre, J., Stroud, R.M., Center for Structures of Membrane Proteins (CSMP)

(2014) Proc Natl Acad Sci U S A 111: 3865-3870

Released	2016-01-13
Method	X-RAY DIFFRACTION 2.19 Å
Organisms	Saccharomyces cerevisiae S288C
Macromolecule	Lanosterol 14-alpha demethylase (protein)
Unique Ligands	1YN, HEM

Explore in 3D

5ESE \| pdb_00005ese	Download File View File

Saccharomyces cerevisiae CYP51 (Lanosterol 14-alpha demethylase) G73R mutant complexed with fluconazole

Sagatova, A., Keniya, M.V., Wilson, R.K., Sabherwal, M., Tyndall, J.D.A., Monk, B.C.

(2018) Antimicrob Agents Chemother 62:

Released	2016-11-23
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Saccharomyces cerevisiae YJM789
Macromolecule	Lanosterol 14-alpha demethylase (protein)
Unique Ligands	HEM, TPF

Explore in 3D

5ESF \| pdb_00005esf	Download File View File

Saccharomyces cerevisiae CYP51 (Lanosterol 14-alpha demethylase) G73E mutant complexed with fluconazole

Sagatova, A., Keniya, M.V., Wilson, R.K., Sabherwal, M., Tyndall, J.D.A., Monk, B.C.

(2018) Antimicrob Agents Chemother 62:

Released	2016-11-23
Method	X-RAY DIFFRACTION 2.25 Å
Organisms	Saccharomyces cerevisiae YJM789
Macromolecule	Lanosterol 14-alpha demethylase (protein)
Unique Ligands	HEM, TPF

Explore in 3D

5ESG \| pdb_00005esg	Download File View File

Saccharomyces cerevisiae CYP51 (Lanosterol 14-alpha demethylase) G73E mutant complexed with itraconazole

Sagatova, A., Keniya, M.V., Wilson, R.K., Sabherwal, M., Tyndall, J.D.A., Monk, B.C.

(2018) Antimicrob Agents Chemother 62:

Released	2016-11-23
Method	X-RAY DIFFRACTION 1.981 Å
Organisms	Saccharomyces cerevisiae YJM789
Macromolecule	Lanosterol 14-alpha demethylase (protein)
Unique Ligands	1YN, HEM

Explore in 3D

5ESH \| pdb_00005esh	Download File View File

Saccharomyces cerevisiae CYP51 (Lanosterol 14-alpha demethylase) G73W mutant in complex with itraconazole

Sagatova, A., Keniya, M.V., Wilson, R.K., Sabherwal, M., Tyndall, J.D.A., Monk, B.C.

(2018) Antimicrob Agents Chemother 62:

Released	2016-11-23
Method	X-RAY DIFFRACTION 2.15 Å
Organisms	Saccharomyces cerevisiae YJM789
Macromolecule	Lanosterol 14-alpha demethylase (protein)
Unique Ligands	1YN, HEM

Explore in 3D

5ESJ \| pdb_00005esj	Download File View File

Saccharomyces cerevisiae CYP51 (Lanosterol 14-alpha demethylase) G464S mutant complexed with fluconazole

Sagatova, A., Keniya, M.V., Wilson, R.K., Sabherwal, M., Tyndall, J.D.A., Monk, B.C.

(2018) Antimicrob Agents Chemother 62:

Released	2016-11-23
Method	X-RAY DIFFRACTION 2.15 Å
Organisms	Saccharomyces cerevisiae YJM789
Macromolecule	Lanosterol 14-alpha demethylase (protein)
Unique Ligands	HEM, TPF

Explore in 3D

5ESK \| pdb_00005esk	Download File View File

Saccharomyces cerevisiae CYP51 (Lanosterol 14-alpha demethylase) G464S mutant complexed with itraconazole

Sagatova, A., Keniya, M.V., Wilson, R.K., Sabherwal, M., Tyndall, J.D.A., Monk, B.C.

(2018) Antimicrob Agents Chemother 62:

Released	2016-11-23
Method	X-RAY DIFFRACTION 2.24 Å
Organisms	Saccharomyces cerevisiae YJM789
Macromolecule	Lanosterol 14-alpha demethylase (protein)
Unique Ligands	1YN, HEM

Explore in 3D

5ESL \| pdb_00005esl	Download File View File

Saccharomyces cerevisiae CYP51 (Lanosterol 14-alpha demethylase) T322I mutant complexed with itraconazole

Sagatova, A., Keniya, M.V., Wilson, R.K., Sabherwal, M., Tyndall, J.D.A., Monk, B.C.

To be published

Released	2016-11-23
Method	X-RAY DIFFRACTION 2.35 Å
Organisms	Saccharomyces cerevisiae YJM789
Macromolecule	Lanosterol 14-alpha demethylase (protein)
Unique Ligands	1YN, HEM

1 to 25 of 30 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

3LNN | pdb_00003lnn

3NK5 | pdb_00003nk5

3NKA | pdb_00003nka

3NKC | pdb_00003nkc

4ISK | pdb_00004isk

4K0E | pdb_00004k0e

4K0J | pdb_00004k0j

4LXJ | pdb_00004lxj

4ZDY | pdb_00004zdy

4ZDZ | pdb_00004zdz

4ZE0 | pdb_00004ze0

4ZE1 | pdb_00004ze1

4ZE2 | pdb_00004ze2

4ZE3 | pdb_00004ze3

5CCB | pdb_00005ccb

5CCX | pdb_00005ccx

5CD1 | pdb_00005cd1

5EQB | pdb_00005eqb

5ESE | pdb_00005ese

5ESF | pdb_00005esf

5ESG | pdb_00005esg

5ESH | pdb_00005esh

5ESJ | pdb_00005esj

5ESK | pdb_00005esk

5ESL | pdb_00005esl