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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "O'Shea, V.L."

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Search Summary

This query matches 3 Structures.

Refinements

Structure Determination Methodology

experimental (3)

Scientific Name of Source Organism

	Geobacillus stearothermophilus (2)
	synthetic construct (2)
	Aquifex aeolicus VF5 (1)

Taxonomy

	Bacteria (3)
	other sequences (2)

Experimental Method

X-RAY DIFFRACTION (3)

Polymer Entity Type

	Protein (3)
	DNA (2)

Refinement Resolution (Å)

	2.0 - 2.5 (2)
	3.0 - 3.5 (1)

Release Date

	2010 - 2014 (1)
	2015 - 2019 (2)

Enzyme Classification Name

	Hydrolases (2)
	Isomerases (1)

Symmetry Type

	Asymmetric (2)
	Cyclic (1)

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4NMN \| pdb_00004nmn	Download File View File

Aquifex aeolicus replicative helicase (DnaB) complexed with ADP, at 3.3 resolution

Lyubimov, A.Y., Strycharska, M.S., Erzberger, J.P., Berger, J.M.

(2013) Mol Cell 52: 844-854

Released	2014-01-29
Method	X-RAY DIFFRACTION 3.301 Å
Organisms	Aquifex aeolicus VF5
Macromolecule	Replicative DNA helicase (protein)
Unique Ligands	ADP, MG, SR

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6Q0C \| pdb_00006q0c	Download File View File

MutY adenine glycosylase bound to DNA containing a transition state analog (1N) paired with undamaged dG

O'Shea Murray, V.L., Russelburg, L.P., Horvath, M.P., David, S.S.

(2020) ACS Chem Biol 15: 93-102

Released	2019-08-28
Method	X-RAY DIFFRACTION 2 Å
Organisms	Geobacillus stearothermophilus synthetic construct
Macromolecule	A/G-specific adenine glycosylase (protein) DNA (5'-D(APAPGPAPCPGPTPGPGPAPC)-3') (nucleic acid) DNA (5'-D(PGPTPCPCPAP(NR1)PGPTPCP*T)-3') (nucleic acid)
Unique Ligands	CA, EDO, SF4

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6U7T \| pdb_00006u7t	Download File View File

MutY adenine glycosylase bound to DNA containing a transition state analog (1N) paired with d(8-oxo-G)

O'Shea Murray, V.L., Cao, S., Horvath, M.P., David, S.S.

(2020) ACS Chem Biol 15: 93-102

Released	2019-10-02
Method	X-RAY DIFFRACTION 2 Å
Organisms	Geobacillus stearothermophilus synthetic construct
Macromolecule	Adenine DNA glycosylase (protein) DNA (5'-D(APAPGPAPCP(8OG)PTPGPGPAPC)-3') (nucleic acid) DNA (5'-D(PGPTPCPCPAP(NR1)PGPTPCP*T)-3') (nucleic acid)
Unique Ligands	CA, SF4

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

4NMN | pdb_00004nmn

Aquifex aeolicus replicative helicase (DnaB) complexed with ADP, at 3.3 resolution

6Q0C | pdb_00006q0c

MutY adenine glycosylase bound to DNA containing a transition state analog (1N) paired with undamaged dG

6U7T | pdb_00006u7t

MutY adenine glycosylase bound to DNA containing a transition state analog (1N) paired with d(8-oxo-G)

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

4NMN | pdb_00004nmn

Aquifex aeolicus replicative helicase (DnaB) complexed with ADP, at 3.3 resolution

6Q0C | pdb_00006q0c

MutY adenine glycosylase bound to DNA containing a transition state analog (1N) paired with undamaged dG

6U7T | pdb_00006u7t

MutY adenine glycosylase bound to DNA containing a transition state analog (1N) paired with d(8-oxo-G)