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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Qiu, D."

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Search Summary

This query matches 6 Structures.

Refinements

Structure Determination Methodology

experimental (6)

Scientific Name of Source Organism

	Drosophila melanogaster (2)
	Aquifex aeolicus VF5 (1)
	Hepatitis C virus subtype 1b (1)
	Pyricularia oryzae (1)
	Verticillium dahliae (1)

Taxonomy

	Eukaryota (4)
	Bacteria (1)
	Riboviria (1)

Experimental Method

X-RAY DIFFRACTION (6)

Polymer Entity Type

Protein (6)

Refinement Resolution (Å)

	1.5 - 2.0 (3)
	2.0 - 2.5 (2)
	2.5 - 3.0 (1)

Release Date

	2010 - 2014 (1)
	2015 - 2019 (4)
	2020 - 2024 (1)

Enzyme Classification Name

	Translocases (1)
	Transferases (1)

Membrane Protein Annotation

OPM (1)

Symmetry Type

	Asymmetric (5)
	Cyclic (1)

SCOP Classification

	Alpha and beta proteins (a+b) (1)
	Multi-domain proteins (alpha and beta) (1)

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1 to 6 of 6 Structures

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3Q0Z \| pdb_00003q0z	Download File View File

Crystal structure of the hepatitis C virus NS5B RNA-dependent RNA polymerase complex with (2E)-3-(4-{[(1-{[(13-cyclohexyl-6-oxo-6,7-dihydro-5h-indolo[1,2-d][1,4]benzodiazepin-10-yl)carbonyl]amino}cyclopentyl)carbonyl]amino}phenyl)prop-2-enoic acid

Sheriff, S.

(2011) Bioorg Med Chem Lett 21: 2925-2929

Released	2011-04-27
Method	X-RAY DIFFRACTION 2.29 Å
Organisms	Hepatitis C virus subtype 1b
Macromolecule	RNA-directed RNA polymerase (protein)
Unique Ligands	23E, SO4

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5FID \| pdb_00005fid	Download File View File

Crystal structure of the protein elicitor MoHrip2 from Magnaporthe oryzae

Liu, M., Duan, L., Qiu, D., Liu, X.

(2016) Front Plant Sci 7: 1103-1103

Released	2016-12-07
Method	X-RAY DIFFRACTION 1.809 Å
Organisms	Pyricularia oryzae
Macromolecule	Elicitor protein Hrip2 (protein)

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5XMZ \| pdb_00005xmz	Download File View File

Verticillium effector PevD1

Liu, X., Zhou, R.

(2017) J Exp Bot 68: 3427-3440

Released	2017-07-05
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Verticillium dahliae
Macromolecule	Effector protein PevD1 (protein)
Unique Ligands	CA, CL

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6IEW \| pdb_00006iew	Download File View File

The crystal structure of the dNxf2 UBA domain in complex with Panoramix

Huang, Y., Cheng, S.

(2019) Nat Cell Biol 21: 1261-1272

Released	2019-08-21
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Drosophila melanogaster
Macromolecule	Fusion protein of Nuclear RNA export factor 2 and Protein panoramix (protein)
Unique Ligands	GOL

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6IHJ \| pdb_00006ihj	Download File View File

Crystal structure of Drosophila Nxf1 NTF2 domain in complex with Nxt1/p15

Huang, Y., Yuan, X.

(2019) Nat Cell Biol 21: 1261-1272

Released	2019-08-14
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Drosophila melanogaster
Macromolecule	NTF2-related export protein (protein) Nuclear RNA export factor 1 (protein)

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6SAQ \| pdb_00006saq	Download File View File

wild-type NuoEF from Aquifex aeolicus bound to NADH-OH

Gerhardt, S.

(2021) Angew Chem Int Ed Engl

Released	2020-07-22
Method	X-RAY DIFFRACTION 2.02 Å
Organisms	Aquifex aeolicus VF5
Macromolecule	NADH-quinone oxidoreductase subunit E (protein) NADH-quinone oxidoreductase subunit F (protein)
Unique Ligands	FES, FMN, GOL, L3W, SF4

1 to 6 of 6 Structures

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

3Q0Z | pdb_00003q0z

Crystal structure of the hepatitis C virus NS5B RNA-dependent RNA polymerase complex with (2E)-3-(4-{[(1-{[(13-cyclohexyl-6-oxo-6,7-dihydro-5h-indolo[1,2-d][1,4]benzodiazepin-10-yl)carbonyl]amino}cyclopentyl)carbonyl]amino}phenyl)prop-2-enoic acid

5FID | pdb_00005fid

Crystal structure of the protein elicitor MoHrip2 from Magnaporthe oryzae

5XMZ | pdb_00005xmz

Verticillium effector PevD1

6IEW | pdb_00006iew

The crystal structure of the dNxf2 UBA domain in complex with Panoramix

6IHJ | pdb_00006ihj

Crystal structure of Drosophila Nxf1 NTF2 domain in complex with Nxt1/p15

6SAQ | pdb_00006saq

wild-type NuoEF from Aquifex aeolicus bound to NADH-OH

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

3Q0Z | pdb_00003q0z

Crystal structure of the hepatitis C virus NS5B RNA-dependent RNA polymerase complex with (2E)-3-(4-{[(1-{[(13-cyclohexyl-6-oxo-6,7-dihydro-5h-indolo[1,2-d][1,4]benzodiazepin-10-yl)carbonyl]amino}cyclopentyl)carbonyl]amino}phenyl)prop-2-enoic acid

5FID | pdb_00005fid

Crystal structure of the protein elicitor MoHrip2 from Magnaporthe oryzae

5XMZ | pdb_00005xmz

Verticillium effector PevD1

6IEW | pdb_00006iew

The crystal structure of the dNxf2 UBA domain in complex with Panoramix

6IHJ | pdb_00006ihj

Crystal structure of Drosophila Nxf1 NTF2 domain in complex with Nxt1/p15

6SAQ | pdb_00006saq

wild-type NuoEF from Aquifex aeolicus bound to NADH-OH