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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Rendon, J."

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Search Summary

This query matches 20 Structures.

Refinements

Structure Determination Methodology

experimental (20)

Scientific Name of Source Organism

	Homo sapiens (20)
	Severe acute respiratory syndrome coronavirus 2 (2)
	Mus musculus (1)

Taxonomy

	Eukaryota (20)
	Riboviria (2)

Experimental Method

X-RAY DIFFRACTION (20)

Polymer Entity Type

Protein (20)

Refinement Resolution (Å)

	1.0 - 1.5 (1)
	1.5 - 2.0 (9)
	2.0 - 2.5 (6)
	2.5 - 3.0 (4)

Release Date

	2015 - 2019 (9)
	2020 - 2024 (11)

Enzyme Classification Name

	Transferases (3)
	Hydrolases (2)

Membrane Protein Annotation

mpstruc (6)

Symmetry Type

	Cyclic (14)
	Asymmetric (7)

SCOP Classification

	Alpha and beta proteins (a+b) (2)
	Artifacts (1)
	Membrane and cell surface proteins and peptides (1)

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1 to 20 of 20 Structures

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5VWV \| pdb_00005vwv	Download File View File

Bak core latch dimer in complex with Bim-BH3 - Cubic

Brouwer, J.M., Colman, P.M., Czabotar, P.E.

(2017) Mol Cell 68: 659-672.e9

Released	2017-11-15
Method	X-RAY DIFFRACTION 1.897 Å
Organisms	Homo sapiens
Macromolecule	Bcl-2 homologous antagonist/killer (protein) Bcl-2-like protein 11 (protein)
Unique Ligands	CL, EDO, GOL, TFA

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5VWW \| pdb_00005vww	Download File View File

Bak core latch dimer in complex with Bim-RT - Tetragonal

Brouwer, J.M., Colman, P.M., Czabotar, P.E.

(2017) Mol Cell 68: 659-672.e9

Released	2017-11-15
Method	X-RAY DIFFRACTION 2.802 Å
Organisms	Homo sapiens
Macromolecule	Bcl-2 homologous antagonist/killer (protein) Bcl-2-like protein 11 (protein)
Unique Ligands	BR, IMD, MPD

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5VWX \| pdb_00005vwx	Download File View File

Bak core latch dimer in complex with Bim-h0-h3Glt

Brouwer, J.M., Lan, P., Lessene, G., Colman, P.M., Czabotar, P.E.

(2017) Mol Cell 68: 659-672.e9

Released	2017-11-15
Method	X-RAY DIFFRACTION 2.489 Å
Organisms	Homo sapiens
Macromolecule	Bcl-2 homologous antagonist/killer (protein) Bcl-2-like protein 11 (protein)
Unique Ligands	EDO

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5VWY \| pdb_00005vwy	Download File View File

Bak core latch dimer in complex with Bim-h3Pc-RT

Brouwer, J.M., Colman, P.M., Czabotar, P.E.

(2017) Mol Cell 68: 659-672.e9

Released	2017-11-15
Method	X-RAY DIFFRACTION 1.555 Å
Organisms	Homo sapiens
Macromolecule	Bcl-2 homologous antagonist/killer (protein) Bcl-2-like protein 11 (protein)
Unique Ligands	PO4

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5VWZ \| pdb_00005vwz	Download File View File

Bak in complex with Bim-h3Pc

Brouwer, J.M., Colman, P.M., Czabotar, P.E.

(2017) Mol Cell 68: 659-672.e9

Released	2017-11-15
Method	X-RAY DIFFRACTION 1.622 Å
Organisms	Homo sapiens
Macromolecule	Bcl-2 homologous antagonist/killer (protein) Bcl-2-like protein 11 (protein)
Unique Ligands	1PG, NH4

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5VX0 \| pdb_00005vx0	Download File View File

Bak in complex with Bim-h3Glg

Brouwer, J.M., Lan, P., Lessene, G., Colman, P.M., Czabotar, P.E.

(2017) Mol Cell 68: 659-672.e9

Released	2017-11-15
Method	X-RAY DIFFRACTION 1.599 Å
Organisms	Homo sapiens
Macromolecule	Bcl-2 homologous antagonist/killer (protein) Bcl-2-like protein 11 (protein)
Unique Ligands	EDO, MG

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5VX1 \| pdb_00005vx1	Download File View File

Bak L100A

Brouwer, J.M., Colman, P.M., Czabotar, P.E.

(2017) Mol Cell 68: 659-672.e9

Released	2017-11-15
Method	X-RAY DIFFRACTION 1.224 Å
Organisms	Homo sapiens
Macromolecule	Bcl-2 homologous antagonist/killer (protein)

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5VX2 \| pdb_00005vx2	Download File View File

Mcl-1 in complex with Bim-h3Pc-RT

Cowan, A.D., Brouwer, J.M., Colman, P.M., Czabotar, P.E.

(2017) Mol Cell 68: 659-672.e9

Released	2017-11-15
Method	X-RAY DIFFRACTION 1.851 Å
Organisms	Homo sapiens Mus musculus
Macromolecule	Bcl-2-like protein 11 (protein) Induced myeloid leukemia cell differentiation protein Mcl-1 homolog,Induced myeloid leukemia cell differentiation protein Mcl-1 chimera (protein)
Unique Ligands	EDO

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5VX3 \| pdb_00005vx3	Download File View File

Bcl-xL in complex with Bim-h3Pc-RT

Cowan, A.D., Brouwer, J.M., Colman, P.M., Czabotar, P.E.

(2017) Mol Cell 68: 659-672.e9

Released	2017-11-15
Method	X-RAY DIFFRACTION 1.945 Å
Organisms	Homo sapiens
Macromolecule	Bcl-2-like protein 1 (protein) Bcl-2-like protein 11 (protein)
Unique Ligands	EDO

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6UXM \| pdb_00006uxm	Download File View File

Crystal structure of BAK core domain BH3-groove-dimer in complex with E. coli lipid

Cowan, A.D., Colman, P.M., Czabotar, P.E.

(2020) Nat Struct Mol Biol 27: 1024-1031

Released	2020-09-02
Method	X-RAY DIFFRACTION 2.49 Å
Organisms	Homo sapiens
Macromolecule	Bcl-2 homologous antagonist/killer (protein)
Unique Ligands	PEE

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6UXN \| pdb_00006uxn	Download File View File

Crystal structure of BAK core domain BH3-groove-dimer in complex with phosphatidylserine

Cowan, A.D., Colman, P.M., Czabotar, P.E.

(2020) Nat Struct Mol Biol 27: 1024-1031

Released	2020-09-02
Method	X-RAY DIFFRACTION 2.49 Å
Organisms	Homo sapiens
Macromolecule	Bcl-2 homologous antagonist/killer (protein)
Unique Ligands	8SP, GOL, SO4

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6UXO \| pdb_00006uxo	Download File View File

Crystal structure of BAK core domain BH3-groove-dimer in complex with DDM

Cowan, A.D., Colman, P.M., Czabotar, P.E.

(2020) Nat Struct Mol Biol 27: 1024-1031

Released	2020-09-02
Method	X-RAY DIFFRACTION 1.799 Å
Organisms	Homo sapiens
Macromolecule	Bcl-2 homologous antagonist/killer (protein)
Unique Ligands	ACT, EDO, LMT, SO4

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6UXP \| pdb_00006uxp	Download File View File

Crystal structure of BAK core domain BH3-groove-dimer in complex with phosphatidylglycerol

Cowan, A.D., Colman, P.M., Czabotar, P.E.

(2020) Nat Struct Mol Biol 27: 1024-1031

Released	2020-09-02
Method	X-RAY DIFFRACTION 2.492 Å
Organisms	Homo sapiens
Macromolecule	Bcl-2 homologous antagonist/killer (protein)
Unique Ligands	GOL, PG8

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6UXQ \| pdb_00006uxq	Download File View File

Crystal structure of BAK core domain BH3-groove-dimer in complex with POPC and C8E4

Cowan, A.D., Colman, P.M., Czabotar, P.E.

(2020) Nat Struct Mol Biol 27: 1024-1031

Released	2020-09-02
Method	X-RAY DIFFRACTION 1.696 Å
Organisms	Homo sapiens
Macromolecule	Bcl-2 homologous antagonist/killer (protein)
Unique Ligands	C8E, EDO, LBN, SO4

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6UXR \| pdb_00006uxr	Download File View File

Crystal structure of BAK core domain BH3-groove-dimer in complex with LysoPC

Cowan, A.D., Colman, P.M., Czabotar, P.E.

(2020) Nat Struct Mol Biol 27: 1024-1031

Released	2020-09-02
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Homo sapiens
Macromolecule	Bcl-2 homologous antagonist/killer (protein)
Unique Ligands	K6G, PG4, PGE

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6XA9 \| pdb_00006xa9	Download File View File

SARS CoV-2 PLpro in complex with ISG15 C-terminal domain propargylamide

Klemm, T., Calleja, D.J., Richardson, L.W., Lechtenberg, B.C., Komander, D.

(2020) EMBO J 39: e106275-e106275

Released	2020-06-17
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Homo sapiens Severe acute respiratory syndrome coronavirus 2
Macromolecule	ISG15 CTD-propargylamide (protein) Non-structural protein 3 (protein)
Unique Ligands	GOL, ZN

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6XAA \| pdb_00006xaa	Download File View File

SARS CoV-2 PLpro in complex with ubiquitin propargylamide

Klemm, T., Calleja, D.J., Richardson, L.W., Lechtenberg, B.C., Komander, D.

(2020) EMBO J 39: e106275-e106275

Released	2020-06-17
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Homo sapiens Severe acute respiratory syndrome coronavirus 2
Macromolecule	Non-structural protein 3 (protein) Ubiquitin-propargylamide (protein)
Unique Ligands	ZN

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7M4M \| pdb_00007m4m	Download File View File

Crystal structure of RBR E3 ligase RNF216 with ubiquitin

Cotton, T.R., Lechtenberg, B.C.

(2022) Mol Cell 82: 598-615.e8

Released	2022-01-05
Method	X-RAY DIFFRACTION 2.39 Å
Organisms	Homo sapiens
Macromolecule	E3 ubiquitin-protein ligase RNF216 (protein) Ubiquitin (protein)
Unique Ligands	GOL, ZN

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7M4N \| pdb_00007m4n	Download File View File

Crystal structure of RBR E3 ligase RNF216 in complex with K63-linked di-ubiquitin

Cotton, T.R., Lechtenberg, B.C.

(2022) Mol Cell 82: 598-615.e8

Released	2022-01-05
Method	X-RAY DIFFRACTION 2.52 Å
Organisms	Homo sapiens
Macromolecule	E3 ubiquitin-protein ligase RNF216 (protein) Ubiquitin (protein)
Unique Ligands	GOL, SO4, ZN

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7M4O \| pdb_00007m4o	Download File View File

Crystal structure of phosphorylated RBR E3 ligase RNF216 in complex with K63-linked di-ubiquitin

Cotton, T.R., Lechtenberg, B.C.

(2022) Mol Cell 82: 598-615.e8

Released	2022-01-05
Method	X-RAY DIFFRACTION 2.21 Å
Organisms	Homo sapiens
Macromolecule	E3 ubiquitin-protein ligase RNF216 (protein) Ubiquitin (protein)
Unique Ligands	GOL, PG0, SO4, ZN

1 to 20 of 20 Structures

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

5VWV | pdb_00005vwv

Bak core latch dimer in complex with Bim-BH3 - Cubic

5VWW | pdb_00005vww

Bak core latch dimer in complex with Bim-RT - Tetragonal

5VWX | pdb_00005vwx

Bak core latch dimer in complex with Bim-h0-h3Glt

5VWY | pdb_00005vwy

Bak core latch dimer in complex with Bim-h3Pc-RT

5VWZ | pdb_00005vwz

Bak in complex with Bim-h3Pc

5VX0 | pdb_00005vx0

Bak in complex with Bim-h3Glg

5VX1 | pdb_00005vx1

Bak L100A

5VX2 | pdb_00005vx2

Mcl-1 in complex with Bim-h3Pc-RT

5VX3 | pdb_00005vx3

Bcl-xL in complex with Bim-h3Pc-RT

6UXM | pdb_00006uxm

Crystal structure of BAK core domain BH3-groove-dimer in complex with E. coli lipid

6UXN | pdb_00006uxn

Crystal structure of BAK core domain BH3-groove-dimer in complex with phosphatidylserine

6UXO | pdb_00006uxo

Crystal structure of BAK core domain BH3-groove-dimer in complex with DDM

6UXP | pdb_00006uxp

Crystal structure of BAK core domain BH3-groove-dimer in complex with phosphatidylglycerol

6UXQ | pdb_00006uxq

Crystal structure of BAK core domain BH3-groove-dimer in complex with POPC and C8E4

6UXR | pdb_00006uxr

Crystal structure of BAK core domain BH3-groove-dimer in complex with LysoPC

6XA9 | pdb_00006xa9

SARS CoV-2 PLpro in complex with ISG15 C-terminal domain propargylamide

6XAA | pdb_00006xaa

SARS CoV-2 PLpro in complex with ubiquitin propargylamide

7M4M | pdb_00007m4m

Crystal structure of RBR E3 ligase RNF216 with ubiquitin

7M4N | pdb_00007m4n

Crystal structure of RBR E3 ligase RNF216 in complex with K63-linked di-ubiquitin

7M4O | pdb_00007m4o

Crystal structure of phosphorylated RBR E3 ligase RNF216 in complex with K63-linked di-ubiquitin

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

5VWV | pdb_00005vwv

5VWW | pdb_00005vww

5VWX | pdb_00005vwx

5VWY | pdb_00005vwy

5VWZ | pdb_00005vwz

5VX0 | pdb_00005vx0

5VX1 | pdb_00005vx1

5VX2 | pdb_00005vx2

5VX3 | pdb_00005vx3

6UXM | pdb_00006uxm

6UXN | pdb_00006uxn

6UXO | pdb_00006uxo

6UXP | pdb_00006uxp

6UXQ | pdb_00006uxq

6UXR | pdb_00006uxr

6XA9 | pdb_00006xa9

6XAA | pdb_00006xaa

7M4M | pdb_00007m4m

7M4N | pdb_00007m4n

7M4O | pdb_00007m4o