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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Smyth, M."

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Search Summary

This query matches 8 Structures.

Refinements

Structure Determination Methodology

experimental (8)

Scientific Name of Source Organism

	Streptococcus pneumoniae (4)
	Bovine enterovirus strain VG-5-27 (1)
	Coxsackievirus A9 (1)
	Escherichia coli (1)
	Staphylococcus aureus (1)

Taxonomy

	Bacteria (6)
	Riboviria (2)

Experimental Method

X-RAY DIFFRACTION (8)

Polymer Entity Type

Protein (8)

Refinement Resolution (Å)

	1.5 - 2.0 (4)
	2.0 - 2.5 (1)
	2.5 - 3.0 (2)
	3.0 - 3.5 (1)

Release Date

	1995 - 1999 (2)
	2005 - 2009 (5)
	2010 - 2014 (1)

Enzyme Classification Name

Hydrolases (6)

Symmetry Type

	Asymmetric (6)
	Icosahedral (2)

SCOP Classification

	Alpha and beta proteins (a+b) (6)
	All beta proteins (2)

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1 to 8 of 8 Structures

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1BEV \| pdb_00001bev	Download File View File

BOVINE ENTEROVIRUS VG-5-27

Smyth, M., Tate, J., Lyons, C., Hoey, E., Martin, S., Stuart, D.

(1995) Nat Struct Biol 2: 224-231

Released	1998-09-16
Method	X-RAY DIFFRACTION 3 Å
Organisms	Bovine enterovirus strain VG-5-27
Macromolecule	BOVINE ENTEROVIRUS COAT PROTEINS VP1 TO VP4 (protein)
Unique Ligands	MYR, SO4

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1D4M \| pdb_00001d4m	Download File View File

THE CRYSTAL STRUCTURE OF COXSACKIEVIRUS A9 TO 2.9 A RESOLUTION

Hendry, E., Hatanaka, H., Fry, E., Smyth, M., Tate, J., Stanway, G., Santti, J., Maaronen, M., Hyypia, T., Stuart, D.

(1999) Structure 7: 1527-1538

Released	1999-12-23
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Coxsackievirus A9
Macromolecule	PROTEIN (COXSACKIEVIRUS A9) (protein)
Unique Ligands	MYR, W71

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2AI7 \| pdb_00002ai7	Download File View File

S.pneumoniae Polypeptide Deformylase complexed with SB-485345

Smith, K.J., Petit, C.M., Aubart, K., Smyth, M., McManus, E., Jones, J., Fosberry, A., Lewis, C., Lonetto, M., Christensen, S.B.

(2003) Protein Sci 12: 349-360

Released	2005-09-06
Method	X-RAY DIFFRACTION 2 Å
Organisms	Streptococcus pneumoniae
Macromolecule	Peptide deformylase (protein)
Unique Ligands	NI, SB7, SO4

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2AI8 \| pdb_00002ai8	Download File View File

E.coli Polypeptide Deformylase complexed with SB-485343

Smith, K.J., Petit, C.M., Aubart, K., Smyth, M., McManus, E., Jones, J., Fosberry, A., Lewis, C., Lonetto, M., Christensen, S.B.

(2003) Protein Sci 12: 349-360

Released	2005-09-06
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Escherichia coli
Macromolecule	Peptide deformylase (protein)
Unique Ligands	NI, SB7

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2AI9 \| pdb_00002ai9	Download File View File

S.aureus Polypeptide Deformylase

Smith, K.J., Petit, C.M., Aubart, K., Smyth, M., McManus, E., Jones, J., Fosberry, A., Lewis, C., Lonetto, M., Christensen, S.B.

(2003) Protein Sci 12: 349-360

Released	2005-09-06
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Staphylococcus aureus
Macromolecule	Peptide deformylase (protein)
Unique Ligands	NI, SO4

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2AIA \| pdb_00002aia	Download File View File

S.pneumoniae PDF complexed with SB-543668

Smith, K.J., Petit, C.M., Aubart, K., Smyth, M., McManus, E., Jones, J., Fosberry, A., Lewis, C., Lonetto, M., Christensen, S.B.

(2003) Protein Sci 12: 349-360

Released	2005-09-06
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Streptococcus pneumoniae
Macromolecule	Peptide deformylase (protein)
Unique Ligands	NI, SB8, SO4

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2AIE \| pdb_00002aie	Download File View File

S.pneumoniae polypeptide deformylase complexed with SB-505684

Smith, K.J., Petit, C.M., Aubart, K., Smyth, M., McManus, E., Jones, J., Fosberry, A., Lewis, C., Lonetto, M., Christensen, S.B.

(2003) Protein Sci 12: 349-360

Released	2005-09-06
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Streptococcus pneumoniae
Macromolecule	Peptide deformylase (protein)
Unique Ligands	NI, SB9, SO4

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3SW8 \| pdb_00003sw8	Download File View File

Strep Peptide Deformylase with a time dependent dichlorobenzamide-reverse hydroxamic acid

Campobasso, N., Smith, K.J.

(2011) Biochemistry 50: 6642-6654

Released	2011-07-27
Method	X-RAY DIFFRACTION 1.702 Å
Organisms	Streptococcus pneumoniae
Macromolecule	Peptide deformylase 3 (protein)
Unique Ligands	5LI, NI, SO4

1 to 8 of 8 Structures

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

1BEV | pdb_00001bev

BOVINE ENTEROVIRUS VG-5-27

1D4M | pdb_00001d4m

THE CRYSTAL STRUCTURE OF COXSACKIEVIRUS A9 TO 2.9 A RESOLUTION

2AI7 | pdb_00002ai7

S.pneumoniae Polypeptide Deformylase complexed with SB-485345

2AI8 | pdb_00002ai8

E.coli Polypeptide Deformylase complexed with SB-485343

2AI9 | pdb_00002ai9

S.aureus Polypeptide Deformylase

2AIA | pdb_00002aia

S.pneumoniae PDF complexed with SB-543668

2AIE | pdb_00002aie

S.pneumoniae polypeptide deformylase complexed with SB-505684

3SW8 | pdb_00003sw8

Strep Peptide Deformylase with a time dependent dichlorobenzamide-reverse hydroxamic acid

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

1BEV | pdb_00001bev

1D4M | pdb_00001d4m

2AI7 | pdb_00002ai7

2AI8 | pdb_00002ai8

2AI9 | pdb_00002ai9

2AIA | pdb_00002aia

2AIE | pdb_00002aie

3SW8 | pdb_00003sw8