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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Song, K."

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Search Summary

This query matches 147 Structures.

Refinements

Structure Determination Methodology

experimental (147)

Scientific Name of Source Organism

	Homo sapiens (82)
	Mus musculus (39)
	Escherichia coli (4)
	Human bocavirus 2 (3)
	Macaca mulatta (3)
	Saccharomyces cerevisiae (3)
	Simian immunodeficiency virus (3)
	Acinetobacter baumannii (2)
	Angavokely henipavirus (2)
	Human bocavirus 1 (2)

More...

Taxonomy

	Eukaryota (125)
	Bacteria (12)
	Riboviria (7)
	Monodnaviria (5)

Experimental Method

	ELECTRON MICROSCOPY (84)
	X-RAY DIFFRACTION (59)
	SOLUTION NMR (4)

Polymer Entity Type

Protein (147)

Refinement Resolution (Å)

	1.0 - 1.5 (2)
	1.5 - 2.0 (23)
	2.0 - 2.5 (12)
	2.5 - 3.0 (25)
	3.0 - 3.5 (35)
	3.5 - 4.0 (22)
	4.0 - 4.5 (16)
	> 4.5 (8)

Release Date

	2000 - 2004 (1)
	2005 - 2009 (1)
	2010 - 2014 (5)
	2015 - 2019 (21)
	2020 - 2024 (110)
	2025 - 2029 (9)

Enzyme Classification Name

	Translocases (41)
	Transferases (45)
	Hydrolases (21)
	Oxidoreductases (5)

Membrane Protein Annotation

	PDBTM (46)
	OPM (13)
	MemProtMD (10)
	mpstruc (12)

Symmetry Type

	Asymmetric (116)
	Cyclic (27)
	Icosahedral (5)
	Dihedral (1)

SCOP Classification

	Alpha and beta proteins (a+b) (19)
	Artifacts (3)
	All alpha proteins (1)

AllSelected

1 to 25 of 147 Structures

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1OZ1 \| pdb_00001oz1	Download File View File

P38 MITOGEN-ACTIVATED KINASE IN COMPLEX WITH 4-AZAINDOLE INHIBITOR

Lovejoy, B., Villasenor, A., Browner, M., Dunten, P.

(2003) J Med Chem 46: 4702-4713

Released	2003-09-23
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens
Macromolecule	Mitogen-activated protein kinase 14 (protein)
Unique Ligands	FPH

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2N08 \| pdb_00002n08	Download File View File

NMR structure of a short hydrophobic 11mer peptide in 25 mM SDS solution

Hoang, H.N., Song, K., Hill, T.A., Derksen, D.R., Edmonds, D.J., Kok, W.M., Limberakis, C., Liras, S., Loria, P.M., Mascitti, V., Mathiowetz, A.M., Mitchell, J.M., Piotrowski, D.W., Price, D.A., Stanton, R.V., Suen, J.Y., Withka, J.M., Griffith, D.A., Fairlie, D.P.

(2015) J Med Chem 58: 4080-4085

Released	2015-04-15
Method	SOLUTION NMR
Macromolecule	Short hydrophobic peptide with cyclic constraints (protein)

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2N09 \| pdb_00002n09	Download File View File

NMR structure of a short hydrophobic 11mer peptide in DMSO-d6/H2O (1:3) solution

(2015) J Med Chem 58: 4080-4085

Released	2015-04-15
Method	SOLUTION NMR
Macromolecule	Short hydrophobic peptide with cyclic constraints (protein)

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2N0I \| pdb_00002n0i	Download File View File

NMR solution structure for di-sulfide 11mer peptide

(2015) J Med Chem 58: 4080-4085

Released	2015-04-15
Method	SOLUTION NMR
Macromolecule	di-sulfide 11mer peptide (protein)

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2N0N \| pdb_00002n0n	Download File View File

NMR solution structure for lactam (5,9) 11mer

(2015) J Med Chem 58: 4080-4085

Released	2015-04-15
Method	SOLUTION NMR
Macromolecule	lactam (5,9) 11mer peptide (protein)

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3IA6 \| pdb_00003ia6	Download File View File

X-ray Crystal structure of the nuclear hormone receptor PPAR-gamma in a complex with a PPAR gamma/alpha dual agonist

Ohren, J.F.

(2009) Bioorg Med Chem 17: 7113-7125

Released	2009-10-13
Method	X-RAY DIFFRACTION 2.31 Å
Organisms	Homo sapiens
Macromolecule	Peroxisome proliferator-activated receptor gamma (protein)
Unique Ligands	UNT

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3OMV \| pdb_00003omv	Download File View File

Crystal structure of c-raf (raf-1)

Hatzivassiliou, G., Song, K., Yen, I., Brandhuber, B.J., Anderson, D.J., Alvarado, R., Ludlam, M.J., Stokoe, D., Gloor, S.L., Vigers, G.P.A., Morales, T., Aliagas, I., Liu, B., Sideris, S., Hoeflich, K.P., Jaiswal, B.S., Seshagiri, S., Koeppen, H., Belvin, M., Friedman, L.S., Malek, S.

(2010) Nature 464: 431-435

Released	2010-09-15
Method	X-RAY DIFFRACTION 4 Å
Organisms	Homo sapiens
Macromolecule	RAF proto-oncogene serine/threonine-protein kinase (protein)
Unique Ligands	SM5

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3TV4 \| pdb_00003tv4	Download File View File

Human B-Raf Kinase Domain in Complex with an Bromopyridine Benzamide Inhibitor

Voegtli, W.C., Selby, L.T., Wu, W.-I.

(2011) ACS Med Chem Lett 2: 342-347

Released	2011-10-05
Method	X-RAY DIFFRACTION 3.4 Å
Organisms	Homo sapiens
Macromolecule	Serine/threonine-protein kinase B-raf (protein)
Unique Ligands	TV4

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3TV6 \| pdb_00003tv6	Download File View File

Human B-Raf Kinase Domain in Complex with a Methoxypyrazolopyridinyl Benzamide Inhibitor

Voegtli, W.C., Sturgis, H.L., Wu, W.-I.

(2011) ACS Med Chem Lett 2: 342-347

Released	2011-10-05
Method	X-RAY DIFFRACTION 3.3 Å
Organisms	Homo sapiens
Macromolecule	Serine/threonine-protein kinase B-raf (protein)
Unique Ligands	B0R

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4LMN \| pdb_00004lmn	Download File View File

Crystal Structure of MEK1 kinase bound to GDC0973

Ultsch, M.H.

(2013) Nature 501: 232-236

Released	2013-08-07
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Homo sapiens
Macromolecule	Dual specificity mitogen-activated protein kinase kinase 1 (protein)
Unique Ligands	ANP, EUI, MG

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4TUM \| pdb_00004tum	Download File View File

Crystal structure of Ankyrin Repeat Domain of AKR2

Gwon, G.H., Cho, Y.

(2014) Dev Cell 30: 598-609

Released	2014-09-24
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Arabidopsis thaliana
Macromolecule	Ankyrin repeat domain-containing protein 2 (protein)

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5B6G \| pdb_00005b6g	Download File View File

Protein-protein interaction

Zhao, Y., Jiang, H., Yang, X., Jiang, F., Song, K., Zhang, J.

(2017) Nat Chem Biol 13: 994-1001

Released	2017-05-31
Method	X-RAY DIFFRACTION 1.99 Å
Organisms	Homo sapiens
Macromolecule	Adenomatous polyposis coli protein (protein) PHQ-ALA-GLY-GLU-ALA-XYC-TYR-GLU (protein)
Unique Ligands	GOL, SO4

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5HI2 \| pdb_00005hi2	Download File View File

BRAF Kinase domain b3aC loop deletion mutant in complex with sorafenib

Whalen, D.M., Foster, S.A., Ozen, A., Wongchenko, M., Yin, J., Schaefer, G., Mayfield, J., Chmielecki, J., Stephens, P., Albacker, L., Yan, Y., Song, K., Hatzivassiliou, G., Eigenbrot, C., Yu, C., Shaw, A.S., Manning, G., Skelton, N.J., Hymowitz, S.G., Malek, S.

(2016) Cancer Cell 29: 477-493

Released	2016-04-06
Method	X-RAY DIFFRACTION 2.512 Å
Organisms	Homo sapiens
Macromolecule	Serine/threonine-protein kinase B-raf (protein)
Unique Ligands	BAX

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5HIB \| pdb_00005hib	Download File View File

EGFR kinase domain mutant "TMLR" with a pyrazolopyrimidine inhibitor

Eigenbrot, C., Yu, C.

(2016) Cancer Cell 29: 477-493

Released	2016-04-06
Method	X-RAY DIFFRACTION 2.85 Å
Organisms	Homo sapiens
Macromolecule	Epidermal growth factor receptor (protein)
Unique Ligands	63M

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5HIC \| pdb_00005hic	Download File View File

EGFR kinase domain mutant "TMLR" with a imidazopyridinyl-aminopyrimidine inhibitor

Eigenbrot, C., Yu, C.

(2016) Cancer Cell 29: 477-493

Released	2016-04-06
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Homo sapiens
Macromolecule	Epidermal growth factor receptor (protein)
Unique Ligands	63N, SO4

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5HID \| pdb_00005hid	Download File View File

BRAF Kinase domain b3aC loop deletion mutant in complex with AZ628

(2016) Cancer Cell 29: 477-493

Released	2016-04-06
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Homo sapiens
Macromolecule	Serine/threonine-protein kinase B-raf (protein)
Unique Ligands	B1E, PEG

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5HIE \| pdb_00005hie	Download File View File

BRAF Kinase domain b3aC loop deletion mutant in complex with dabrafenib

(2016) Cancer Cell 29: 477-493

Released	2016-04-06
Method	X-RAY DIFFRACTION 3 Å
Organisms	Homo sapiens
Macromolecule	Serine/threonine-protein kinase B-raf (protein)
Unique Ligands	P06

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5IZ6 \| pdb_00005iz6	Download File View File

Protein-protein interaction

Zhao, Y., Jiang, H., Yang, X., Jiang, F., Song, K., Zhang, J.

(2017) Nat Chem Biol 13: 994-1001

Released	2017-07-05
Method	X-RAY DIFFRACTION 2.15 Å
Organisms	Homo sapiens
Macromolecule	Adenomatous polyposis coli protein (protein) PHQ-ALA-GLY-GLU-ALA-LEU-TYR-GLU-NH2 (protein)
Unique Ligands	PEG, SO4

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5IZ8 \| pdb_00005iz8	Download File View File

Protein-protein interaction

Zhao, Y., Jiang, H., Yang, X., Jiang, F., Song, K., Zhang, J.

(2017) Nat Chem Biol 13: 994-1001

Released	2017-07-05
Method	X-RAY DIFFRACTION 3.06 Å
Organisms	Homo sapiens
Macromolecule	ACE-ALA-GLY-GLU-ALA-LEU-ALA-ASP-NH2 (protein) Adenomatous polyposis coli protein (protein)
Unique Ligands	PGE

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5IZ9 \| pdb_00005iz9	Download File View File

Protein-protein interaction

Zhao, Y., Jiang, H., Yang, X., Jiang, F., Song, K., Zhang, J.

(2017) Nat Chem Biol 13: 994-1001

Released	2017-07-05
Method	X-RAY DIFFRACTION 2.93 Å
Organisms	Homo sapiens
Macromolecule	ACE-GLY-GLY-GLU-ALA-LEU-ALA-ASP-NH2 (protein) Adenomatous polyposis coli protein (protein)

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5IZA \| pdb_00005iza	Download File View File

Protein-protein interaction

Zhao, Y., Jiang, H., Yang, X., Jiang, F., Song, K., Zhang, J.

(2017) Nat Chem Biol 13: 994-1001

Released	2017-07-05
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Homo sapiens
Macromolecule	ACE-GLY-GLY-GLU-ALA-LEU-ALA-TRP-NH2 (protein) Adenomatous polyposis coli protein (protein)

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5X16 \| pdb_00005x16	Download File View File

Sirt6 apo structure

Zhang, J., Huang, Z., Song, K.

To be published

Released	2018-07-04
Method	X-RAY DIFFRACTION 1.97 Å
Organisms	Homo sapiens
Macromolecule	NAD-dependent protein deacetylase sirtuin-6 (protein)
Unique Ligands	AR6, GOL, TBU, ZN

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5XGH \| pdb_00005xgh	Download File View File

Crystal structure of PI3K complex with an inhibitor

Song, K., Yang, X., Zhao, Y., Jian, Z.

(2017) Sci Rep 7: 14572-14572

Released	2018-04-25
Method	X-RAY DIFFRACTION 2.97 Å
Organisms	Homo sapiens
Macromolecule	Phosphatidylinositol 3-kinase regulatory subunit alpha (protein) Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit alpha isoform (protein)
Unique Ligands	84U, GOL, SO4

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5XGI \| pdb_00005xgi	Download File View File

Crystal structure of PI3K complex with an inhibitor

Song, K., Yang, X., Zhao, Y., Jian, Z.

To be published

Released	2018-04-25
Method	X-RAY DIFFRACTION 2.56 Å
Organisms	Homo sapiens
Macromolecule	Phosphatidylinositol 3-kinase regulatory subunit alpha (protein) Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit alpha isoform (protein)
Unique Ligands	84R, GOL, P6G, SO4

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5XGJ \| pdb_00005xgj	Download File View File

Crystal structure of PI3K complex with an inhibitor

Song, K., Yang, X., Zhao, Y., Jian, Z.

To be published

Released	2018-04-25
Method	X-RAY DIFFRACTION 2.97 Å
Organisms	Homo sapiens
Macromolecule	Phosphatidylinositol 3-kinase regulatory subunit alpha (protein) Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit alpha isoform (protein)
Unique Ligands	84X, SO4

1 to 25 of 147 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1OZ1 | pdb_00001oz1

2N08 | pdb_00002n08

2N09 | pdb_00002n09

2N0I | pdb_00002n0i

2N0N | pdb_00002n0n

3IA6 | pdb_00003ia6

3OMV | pdb_00003omv

3TV4 | pdb_00003tv4

3TV6 | pdb_00003tv6

4LMN | pdb_00004lmn

4TUM | pdb_00004tum

5B6G | pdb_00005b6g

5HI2 | pdb_00005hi2

5HIB | pdb_00005hib

5HIC | pdb_00005hic

5HID | pdb_00005hid

5HIE | pdb_00005hie

5IZ6 | pdb_00005iz6

5IZ8 | pdb_00005iz8

5IZ9 | pdb_00005iz9

5IZA | pdb_00005iza

5X16 | pdb_00005x16

5XGH | pdb_00005xgh

5XGI | pdb_00005xgi

5XGJ | pdb_00005xgj