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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Tanokura, M."

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Search Summary

This query matches 231 Structures.

Refinements

Structure Determination Methodology

experimental (231)

Scientific Name of Source Organism

	synthetic construct (20)
	Homo sapiens (16)
	Pyrococcus horikoshii (13)
	Arabidopsis thaliana (12)
	Oryza sativa Japonica Group (8)
	Sphingobium sp. MI1205 (8)
	Escherichia coli (7)
	Serratia sp. FS14 (7)
	Striga hermonthica (7)
	Sulfurisphaera tokodaii str. 7 (7)

More...

Taxonomy

	Bacteria (109)
	Eukaryota (90)
	Archaea (38)
	other sequences (20)
	Eukaryota (eukaryotes) (2)

Experimental Method

	X-RAY DIFFRACTION (210)
	SOLUTION NMR (17)
	ELECTRON MICROSCOPY (4)

Polymer Entity Type

	Protein (231)
	DNA (21)
	RNA (1)

Refinement Resolution (Å)

	1.0 - 1.5 (13)
	1.5 - 2.0 (93)
	2.0 - 2.5 (72)
	2.5 - 3.0 (27)
	3.0 - 3.5 (9)

Release Date

	1995 - 1999 (10)
	2000 - 2004 (13)
	2005 - 2009 (51)
	2010 - 2014 (66)
	2015 - 2019 (61)
	2020 - 2024 (29)
	2025 - 2029 (1)

Enzyme Classification Name

	Oxidoreductases (36)
	Hydrolases (40)
	Transferases (20)
	Lyases (12)
	Ligases (6)
	Isomerases (7)

Membrane Protein Annotation

OPM (1)

Symmetry Type

	Asymmetric (113)
	Cyclic (100)
	Dihedral (33)

SCOP Classification

	Alpha and beta proteins (a/b) (51)
	All beta proteins (24)
	Alpha and beta proteins (a+b) (25)
	Artifacts (16)
	All alpha proteins (9)
	Small proteins (3)
	Peptides (2)

AllSelected

1 to 25 of 231 Structures

Page 1 of 10

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1AQ8 \| pdb_00001aq8	Download File View File

STRUCTURE OF ALCALIGENES FAECALIS NITRITE REDUCTASE REDUCED WITH ASCORBATE

Murphy, M.E.P., Adman, E.T., Turley, S.

(1997) J Biological Chem 272: 28455-28460

Released	1998-02-25
Method	X-RAY DIFFRACTION 2 Å
Organisms	Alcaligenes faecalis
Macromolecule	NITRITE REDUCTASE (protein)
Unique Ligands	CU

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1AS6 \| pdb_00001as6	Download File View File

STRUCTURE OF NITRITE BOUND TO OXIDIZED ALCALIGENES FAECALIS NITRITE REDUCTASE AT CRYO TEMPERATURE

Murphy, M.E.P., Adman, E.T., Turley, S.

(1997) J Biological Chem 272: 28455-28460

Released	1998-02-25
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Alcaligenes faecalis
Macromolecule	NITRITE REDUCTASE (protein)
Unique Ligands	CU, NO2

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1AS7 \| pdb_00001as7	Download File View File

STRUCTURE OF ALCALIGENES FAECALIS NITRITE REDUCTASE AT CRYO TEMPERATURE

Murphy, M.E.P., Adman, E.T., Turley, S.

(1997) J Biological Chem 272: 28455-28460

Released	1998-02-25
Method	X-RAY DIFFRACTION 2 Å
Organisms	Alcaligenes faecalis
Macromolecule	NITRITE REDUCTASE (protein)
Unique Ligands	CU

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1AS8 \| pdb_00001as8	Download File View File

STRUCTURE OF NITRITE BOUND TO REDUCED ALCALIGENES FAECALIS NITRITE REDUCTASE AT CRYO TEMPERATURE

Murphy, M.E.P., Adman, E.T., Turley, S.

(1997) J Biological Chem 272: 28455-28460

Released	1998-02-25
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Alcaligenes faecalis
Macromolecule	NITRITE REDUCTASE (protein)
Unique Ligands	CU, NO2

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1BI6 \| pdb_00001bi6	Download File View File

NMR STRUCTURE OF BROMELAIN INHIBITOR VI FROM PINEAPPLE STEM

Hatano, K.-I.

(1996) Biochemistry 35: 5379-5384

Released	1996-04-03
Method	SOLUTION NMR
Organisms	Ananas comosus
Macromolecule	BROMELAIN INHIBITOR VI (protein)

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1DET \| pdb_00001det	Download File View File

RIBONUCLEASE T1 CARBOXYMETHYLATED AT GLU 58 IN COMPLEX WITH 2'GMP

Ishikawa, K., Suzuki, E., Tanokura, M., Takahashi, K.

(1996) Biochemistry 35: 8329-8334

Released	1996-07-11
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Aspergillus oryzae
Macromolecule	RIBONUCLEASE T1 (protein)
Unique Ligands	2GP, NA

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1EQK \| pdb_00001eqk	Download File View File

SOLUTION STRUCTURE OF ORYZACYSTATIN-I, A CYSTEINE PROTEINASE INHIBITOR OF THE RICE, ORYZA SATIVA L. JAPONICA

Nagata, K., Kudo, N., Abe, K., Arai, S., Tanokura, M.

(2000) Biochemistry 39: 14753-14760

Released	2001-01-10
Method	SOLUTION NMR
Organisms	Oryza sativa Japonica Group
Macromolecule	ORYZACYSTATIN-I (protein)

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1F5V \| pdb_00001f5v	Download File View File

STRUCTURE AND SITE-DIRECTED MUTAGENESIS OF A FLAVOPROTEIN FROM ESCHERICHIA COLI THAT REDUCES NITROCOMPOUNDS. ALTERATION OF PYRIDINE NUCLEOTIDE BINDING BY A SINGLE AMINO ACID SUBSTITUTION

Kobori, T., Sasaki, H., Lee, W.C., Zenno, S., Saigo, K., Murphy, M.E.P., Tanokura, M.

(2001) J Biological Chem 276: 2816-2823

Released	2001-02-14
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Escherichia coli
Macromolecule	OXYGEN-INSENSITIVE NADPH NITROREDUCTASE (protein)
Unique Ligands	FMN

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1IJ5 \| pdb_00001ij5	Download File View File

METAL-FREE STRUCTURE OF MULTIDOMAIN EF-HAND PROTEIN, CBP40, FROM TRUE SLIME MOLD

Iwasaki, W., Sasaki, H., Nakamura, A., Kohama, K., Tanokura, M.

(2003) Structure 11: 75-85

Released	2003-02-11
Method	X-RAY DIFFRACTION 3 Å
Organisms	Physarum polycephalum
Macromolecule	PLASMODIAL SPECIFIC LAV1-2 PROTEIN (protein)

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1IJ6 \| pdb_00001ij6	Download File View File

CA2+-BOUND STRUCTURE OF MULTIDOMAIN EF-HAND PROTEIN, CBP40, FROM TRUE SLIME MOLD

Iwasaki, W., Sasaki, H., Nakamura, A., Kohama, K., Tanokura, M.

(2003) Structure 11: 75-85

Released	2003-02-11
Method	X-RAY DIFFRACTION 3.1 Å
Organisms	Physarum polycephalum
Macromolecule	PLASMODIAL SPECIFIC LAV1-2 PROTEIN (protein)
Unique Ligands	CA

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1ION \| pdb_00001ion	Download File View File

THE SEPTUM SITE-DETERMINING PROTEIN MIND COMPLEXED WITH MG-ADP FROM PYROCOCCUS HORIKOSHII OT3

Sakai, N., Yao, M., Itou, H., Watanabe, N., Yumoto, F., Tanokura, M., Tanaka, I.

(2001) Structure 9: 817-826

Released	2001-09-26
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Pyrococcus horikoshii OT3
Macromolecule	PROBABLE CELL DIVISION INHIBITOR MIND (protein)
Unique Ligands	ADP, MG

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1IX5 \| pdb_00001ix5	Download File View File

Solution structure of the Methanococcus thermolithotrophicus FKBP

Suzuki, R., Nagata, K., Kawakami, M., Nemoto, N., Furutani, M., Adachi, K., Maruyama, T., Tanokura, M.

(2003) J Mol Biology 328: 1149-1160

Released	2003-06-10
Method	SOLUTION NMR
Organisms	Methanothermococcus thermolithotrophicus
Macromolecule	FKBP (protein)

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1IYY \| pdb_00001iyy	Download File View File

NMR STRUCTURE OF Gln25-RIBONUCLEASE T1, 24 STRUCTURES

Hatano, K., Kojima, M., Suzuki, E., Tanokura, M., Takahashi, K.

(2003) Biol Chem 384: 1173-1183

Released	2003-10-07
Method	SOLUTION NMR
Organisms	Aspergillus oryzae
Macromolecule	RIBONUCLEASE T1 (protein)

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1J0T \| pdb_00001j0t	Download File View File

The solution structure of molt-inhibiting hormone from the kuruma prawn

Katayama, H., Nagata, K., Ohira, T., Yumoto, F., Tanokura, M., Nagasawa, H.

(2003) J Biological Chem 278: 9620-9623

Released	2002-12-11
Method	SOLUTION NMR
Organisms	Penaeus japonicus
Macromolecule	MOLT-INHIBITING HORMONE (protein)

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1NTD \| pdb_00001ntd	Download File View File

STRUCTURE OF ALCALIGENES FAECALIS NITRITE REDUCTASE MUTANT M150E THAT CONTAINS ZINC

Murphy, M.E.P., Adman, E.T., Turley, S.

(1995) Biochemistry 34: 12107-12117

Released	1996-11-08
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Alcaligenes faecalis
Macromolecule	NITRITE REDUCTASE (protein)
Unique Ligands	CU

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1ULI \| pdb_00001uli	Download File View File

Biphenyl dioxygenase (BphA1A2) derived from Rhodococcus sp. strain RHA1

Furusawa, Y., Nagarajan, V., Masai, E., Tanokura, M., Fukuda, M., Senda, T.

(2004) J Mol Biology 342: 1041-1052

Released	2004-09-28
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Rhodococcus jostii RHA1
Macromolecule	biphenyl dioxygenase large subunit (protein) biphenyl dioxygenase small subunit (protein)
Unique Ligands	FE2, FES

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1ULJ \| pdb_00001ulj	Download File View File

Biphenyl dioxygenase (BphA1A2) in complex with the substrate

Furusawa, Y., Nagarajan, V., Masai, E., Tanokura, M., Fukuda, M., Senda, T.

(2004) J Mol Biology 342: 1041-1052

Released	2004-09-28
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Rhodococcus jostii RHA1
Macromolecule	biphenyl dioxygenase large subunit (protein) biphenyl dioxygenase small subunit (protein)
Unique Ligands	BNL, FE2, FES

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1V3Y \| pdb_00001v3y	Download File View File

The crystal structure of peptide deformylase from Thermus thermophilus HB8

Kamo, M., Kudo, N., Lee, W.C., Ito, K., Motoshim, H., Tanokura, M., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

To be published

Released	2004-12-28
Method	X-RAY DIFFRACTION 1.81 Å
Organisms	Thermus thermophilus
Macromolecule	Peptide deformylase (protein)

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1V3Z \| pdb_00001v3z	Download File View File

Crystal Structure of Acylphosphatase from Pyrococcus horikoshii

Miyazono, K., Tanokura, M.

(2004) Proc Jpn Acad Ser B Phys Biol Sci 80: 439-442

Released	2004-11-30
Method	X-RAY DIFFRACTION 1.72 Å
Organisms	Pyrococcus horikoshii
Macromolecule	Acylphosphatase (protein)
Unique Ligands	CL, K

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1V46 \| pdb_00001v46	Download File View File

Solution Structure of CCAP (Crustacean Cardioactive Peptide) from Drosophila melanogaster

Nagata, K., Tanokura, M.

To be published

Released	2004-12-14
Method	SOLUTION NMR
Organisms	Manduca sexta
Macromolecule	Cardioactive Peptide (protein)

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1V4B \| pdb_00001v4b	Download File View File

The crystal structure of AzoR (Azo Reductase) from Escherichia coli: Oxidized form

Ito, K., Tanokura, M.

(2006) J Biological Chem 281: 20567-20576

Released	2005-01-18
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Escherichia coli
Macromolecule	NADH-azoreductase, FMN-dependent (protein)
Unique Ligands	EDO, FMN, IPA

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1V5I \| pdb_00001v5i	Download File View File

Crystal structure of serine protease inhibitor POIA1 in complex with subtilisin BPN'

Lee, W.C., Kikkawa, M., Kojima, S., Miura, K., Tanokura, M.

To be published

Released	2005-03-08
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Bacillus amyloliquefaciens Pleurotus ostreatus
Macromolecule	IA-1=serine proteinase inhibitor (protein) Subtilisin BPN' (protein)
Unique Ligands	CA, GOL, SO4

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1V5Y \| pdb_00001v5y	Download File View File

Binding of coumarins to NAD(P)H:FMN oxidoreductase

Kobori, T., Koike, H., Sasaki, H., Zenno, S., Saigo, K., Tanokura, M.

To be published

Released	2005-03-08
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Aliivibrio fischeri
Macromolecule	Major NAD(P)H-flavin oxidoreductase (protein)
Unique Ligands	4HC, FMN

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1V5Z \| pdb_00001v5z	Download File View File

Binding of coumarins to NAD(P)H:FMN oxidoreductase

Kobori, T., Koike, H., Sasaki, H., Zenno, S., Saigo, K., Tanokura, M.

To be published

Released	2005-03-08
Method	X-RAY DIFFRACTION 2 Å
Organisms	Aliivibrio fischeri
Macromolecule	Major NAD(P)H-flavin oxidoreductase (protein)
Unique Ligands	2HC, FMN