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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Thompson, P.R."

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Search Summary

This query matches 46 Structures.

Refinements

Structure Determination Methodology

experimental (46)

Scientific Name of Source Organism

	Homo sapiens (36)
	Enterococcus faecalis (3)
	Severe acute respiratory syndrome coronavirus 2 (3)
	Saccharomyces cerevisiae (2)
	Helicobacter pylori J99 (1)
	enterovirus D68 (1)

Taxonomy

	Eukaryota (38)
	Bacteria (4)
	Riboviria (4)

Experimental Method

X-RAY DIFFRACTION (46)

Polymer Entity Type

Protein (46)

Refinement Resolution (Å)

	1.5 - 2.0 (18)
	2.0 - 2.5 (14)
	2.5 - 3.0 (7)
	3.0 - 3.5 (7)

Release Date

	2000 - 2004 (5)
	2005 - 2009 (2)
	2010 - 2014 (4)
	2015 - 2019 (25)
	2020 - 2024 (10)

Enzyme Classification Name

	Hydrolases (38)
	Transferases (4)
	Oxidoreductases (2)

Symmetry Type

	Cyclic (44)
	Asymmetric (2)

SCOP Classification

	All beta proteins (35)
	Alpha and beta proteins (a+b) (41)
	Artifacts (18)
	Alpha and beta proteins (a/b) (2)

AllSelected

1 to 25 of 46 Structures

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1EBF \| pdb_00001ebf	Download File View File

HOMOSERINE DEHYDROGENASE FROM S. CEREVISIAE COMPLEX WITH NAD+

DeLaBarre, B., Thompson, P.R., Wright, G.D., Berghuis, A.M.

(2000) Nat Struct Biol 7: 238-244

Released	2000-03-08
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	HOMOSERINE DEHYDROGENASE (protein)
Unique Ligands	NA, NAD

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1EBU \| pdb_00001ebu	Download File View File

HOMOSERINE DEHYDROGENASE COMPLEX WITH NAD ANALOGUE AND L-HOMOSERINE

DeLaBarre, B., Thompson, P.R., Wright, G.D., Berghuis, A.M.

(2000) Nat Struct Biol 7: 238-244

Released	2000-03-08
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	HOMOSERINE DEHYDROGENASE (protein)
Unique Ligands	HSE, NA, NDA

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1J7I \| pdb_00001j7i	Download File View File

Crystal Structure of 3',5"-Aminoglycoside Phosphotransferase Type IIIa Apoenzyme

Burk, D.L., Hon, W.C., Leung, A.K.-W., Berghuis, A.M.

(2001) Biochemistry 40: 8756-8764

Released	2001-08-08
Method	X-RAY DIFFRACTION 3.2 Å
Organisms	Enterococcus faecalis
Macromolecule	AMINOGLYCOSIDE 3'-PHOSPHOTRANSFERASE (protein)

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1J7L \| pdb_00001j7l	Download File View File

Crystal Structure of 3',5"-Aminoglycoside Phosphotransferase Type IIIa ADP Complex

Burk, D.L., Hon, W.C., Leung, A.K.-W., Berghuis, A.M.

(2001) Biochemistry 40: 8756-8764

Released	2001-08-08
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Enterococcus faecalis
Macromolecule	AMINOGLYCOSIDE 3'-PHOSPHOTRANSFERASE (protein)
Unique Ligands	ADP, MG

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1J7U \| pdb_00001j7u	Download File View File

Crystal Structure of 3',5"-Aminoglycoside Phosphotransferase Type IIIa AMPPNP Complex

Burk, D.L., Hon, W.C., Leung, A.K.-W., Berghuis, A.M.

(2001) Biochemistry 40: 8756-8764

Released	2001-08-08
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Enterococcus faecalis
Macromolecule	AMINOGLYCOSIDE 3'-PHOSPHOTRANSFERASE (protein)
Unique Ligands	ANP, MG

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2DW5 \| pdb_00002dw5	Download File View File

Crystal structure of human peptidylarginine deiminase 4 in complex with N-alpha-benzoyl-N5-(2-fluoro-1-iminoethyl)-L-ornithine amide

Luo, Y., Arita, K., Sato, M., Thompson, P.R.

(2006) Biochemistry 45: 11727-11736

Released	2006-10-17
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Homo sapiens
Macromolecule	Protein-arginine deiminase type-4 (protein)
Unique Ligands	BFB, CA, SO4

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3B1T \| pdb_00003b1t	Download File View File

Crystal structure of human peptidylarginine deiminase 4 in complex with o-Cl-amidine

Causey, C.P., Jones, J.E., Slack, J.L., Kamei, D., Jones Jr, L.E., Subramanian, V., Knuckley, B., Ebrahimi, P., Chumanevich, A.A., Luo, Y., Hashimoto, H., Shimizu, T., Sato, M., Hofseth, L.J., Thompson, P.R.

(2011) J Med Chem 54: 6919-6935

Released	2011-10-26
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Homo sapiens
Macromolecule	Protein-arginine deiminase type-4 (protein)
Unique Ligands	CA, SO4, YCL

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3B1U \| pdb_00003b1u	Download File View File

Crystal structure of human peptidylarginine deiminase 4 in complex with o-F-amidine

(2011) J Med Chem 54: 6919-6935

Released	2011-10-26
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens
Macromolecule	Protein-arginine deiminase type-4 (protein)
Unique Ligands	CA, SO4, YFF

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3BIY \| pdb_00003biy	Download File View File

Crystal structure of p300 histone acetyltransferase domain in complex with a bisubstrate inhibitor, Lys-CoA

Liu, X., Wang, L., Zhao, K., Thompson, P.R., Hwang, Y., Marmorstein, R., Cole, P.A.

(2008) Nature 451: 846-850

Released	2008-02-12
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Homo sapiens
Macromolecule	Histone acetyltransferase p300 (protein)
Unique Ligands	01K, BR

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3HVM \| pdb_00003hvm	Download File View File

Agmatine Deiminase from Helicobacter pylori

Jones, J., Lovelace, L., Lebioda, L., Thompson, P.

(2010) Bioorg Chem 38: 62-73

Released	2010-01-19
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Helicobacter pylori J99
Macromolecule	AGMATINE DEIMINASE (protein)

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4DKT \| pdb_00004dkt	Download File View File

Crystal structure of human peptidylarginine deiminase 4 in complex with N-acetyl-L-threonyl-L-alpha-aspartyl-N5-[(1E)-2-fluoroethanimidoyl]-L-ornithinamide

Jones, J.E., Slack, J.L., Fang, P., Zhang, X., Subramanian, V., Causey, C.P., Coonrod, S.A., Guo, M., Thompson, P.R.

(2012) ACS Chem Biol 7: 160-165

Released	2012-02-29
Method	X-RAY DIFFRACTION 2.98 Å
Organisms	Homo sapiens
Macromolecule	Protein-arginine deiminase type-4 (protein) Thr-Asp-F-amidine (protein)
Unique Ligands	CA, EDO, SO4

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4N20 \| pdb_00004n20	Download File View File

Crystal structure of Protein Arginine Deiminase 2 (0 mM Ca2+)

Slade, D.J., Zhang, X., Fang, P., Dreyton, C.J., Zhang, Y., Gross, M.L., Guo, M., Coonrod, S.A., Thompson, P.R.

(2015) ACS Chem Biol 10: 1043-1053

Released	2015-02-04
Method	X-RAY DIFFRACTION 1.657 Å
Organisms	Homo sapiens
Macromolecule	Protein-arginine deiminase type-2 (protein)
Unique Ligands	ACT, CA, MPD

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4N22 \| pdb_00004n22	Download File View File

Crystal structure of Protein Arginine Deiminase 2 (50 uM Ca2+)

Slade, D.J., Zhang, X., Fang, P., Dreyton, C.J., Zhang, Y., Gross, M.L., Guo, M., Coonrod, S.A., Thompson, P.R.

(2015) ACS Chem Biol 10: 1043-1053

Released	2015-02-04
Method	X-RAY DIFFRACTION 1.889 Å
Organisms	Homo sapiens
Macromolecule	Protein-arginine deiminase type-2 (protein)
Unique Ligands	ACT, CA, GOL, MPD

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4N24 \| pdb_00004n24	Download File View File

Crystal structure of Protein Arginine Deiminase 2 (100 uM Ca2+)

Slade, D.J., Zhang, X., Fang, P., Dreyton, C.J., Zhang, Y., Gross, M.L., Guo, M., Coonrod, S.A., Thompson, P.R.

(2015) ACS Chem Biol 10: 1043-1053

Released	2015-02-04
Method	X-RAY DIFFRACTION 1.968 Å
Organisms	Homo sapiens
Macromolecule	Protein-arginine deiminase type-2 (protein)
Unique Ligands	ACT, CA, GOL, MPD, MRD

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4N25 \| pdb_00004n25	Download File View File

Crystal structure of Protein Arginine Deiminase 2 (250 uM Ca2+)

Slade, D.J., Zhang, X., Fang, P., Dreyton, C.J., Zhang, Y., Gross, M.L., Guo, M., Coonrod, S.A., Thompson, P.R.

(2015) ACS Chem Biol 10: 1043-1053

Released	2015-02-04
Method	X-RAY DIFFRACTION 1.931 Å
Organisms	Homo sapiens
Macromolecule	Protein-arginine deiminase type-2 (protein)
Unique Ligands	ACT, CA, MPD, MRD

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4N26 \| pdb_00004n26	Download File View File

Crystal structure of Protein Arginine Deiminase 2 (500 uM Ca2+)

Slade, D.J., Zhang, X., Fang, P., Dreyton, C.J., Zhang, Y., Gross, M.L., Guo, M., Coonrod, S.A., Thompson, P.R.

(2015) ACS Chem Biol 10: 1043-1053

Released	2015-02-04
Method	X-RAY DIFFRACTION 1.943 Å
Organisms	Homo sapiens
Macromolecule	Protein-arginine deiminase type-2 (protein)
Unique Ligands	ACT, CA, MPD

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4N28 \| pdb_00004n28	Download File View File

Crystal structure of Protein Arginine Deiminase 2 (1 mM Ca2+)

Slade, D.J., Zhang, X., Fang, P., Dreyton, C.J., Zhang, Y., Gross, M.L., Guo, M., Coonrod, S.A., Thompson, P.R.

(2015) ACS Chem Biol 10: 1043-1053

Released	2015-02-04
Method	X-RAY DIFFRACTION 1.879 Å
Organisms	Homo sapiens
Macromolecule	Protein-arginine deiminase type-2 (protein)
Unique Ligands	ACT, CA, MPD

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4N2A \| pdb_00004n2a	Download File View File

Crystal structure of Protein Arginine Deiminase 2 (5 mM Ca2+)

Slade, D.J., Zhang, X., Fang, P., Dreyton, C.J., Zhang, Y., Gross, M.L., Guo, M., Coonrod, S.A., Thompson, P.R.

(2015) ACS Chem Biol 10: 1043-1053

Released	2015-02-04
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Homo sapiens
Macromolecule	Protein-arginine deiminase type-2 (protein)
Unique Ligands	ACT, CA, MPD

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4N2B \| pdb_00004n2b	Download File View File

Crystal structure of Protein Arginine Deiminase 2 (10 mM Ca2+)

Slade, D.J., Zhang, X., Fang, P., Dreyton, C.J., Zhang, Y., Gross, M.L., Guo, M., Coonrod, S.A., Thompson, P.R.

(2015) ACS Chem Biol 10: 1043-1053

Released	2015-02-04
Method	X-RAY DIFFRACTION 1.69 Å
Organisms	Homo sapiens
Macromolecule	Protein-arginine deiminase type-2 (protein)
Unique Ligands	CA, MPD

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4N2C \| pdb_00004n2c	Download File View File

Crystal structure of Protein Arginine Deiminase 2 (F221/222A, 10 mM Ca2+)

Slade, D.J., Zhang, X., Fang, P., Dreyton, C.J., Zhang, Y., Gross, M.L., Guo, M., Coonrod, S.A., Thompson, P.R.

(2015) ACS Chem Biol 10: 1043-1053

Released	2015-02-04
Method	X-RAY DIFFRACTION 3.022 Å
Organisms	Homo sapiens
Macromolecule	Protein-arginine deiminase type-2 (protein)
Unique Ligands	CA

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4N2D \| pdb_00004n2d	Download File View File

Crystal structure of Protein Arginine Deiminase 2 (D123N, 0 mM Ca2+)

Slade, D.J., Zhang, X., Fang, P., Dreyton, C.J., Zhang, Y., Gross, M.L., Guo, M., Coonrod, S.A., Thompson, P.R.

(2015) ACS Chem Biol 10: 1043-1053

Released	2015-02-04
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	Protein-arginine deiminase type-2 (protein)
Unique Ligands	CA, MPD

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4N2E \| pdb_00004n2e	Download File View File

Crystal structure of Protein Arginine Deiminase 2 (D123N, 10 mM Ca2+)

Slade, D.J., Zhang, X., Fang, P., Dreyton, C.J., Zhang, Y., Gross, M.L., Guo, M., Coonrod, S.A., Thompson, P.R.

(2015) ACS Chem Biol 10: 1043-1053

Released	2015-02-04
Method	X-RAY DIFFRACTION 1.858 Å
Organisms	Homo sapiens
Macromolecule	Protein-arginine deiminase type-2 (protein)
Unique Ligands	CA, MPD

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4N2F \| pdb_00004n2f	Download File View File

Crystal structure of Protein Arginine Deiminase 2 (D169A, 0 mM Ca2+)

Slade, D.J., Zhang, X., Fang, P., Dreyton, C.J., Zhang, Y., Gross, M.L., Guo, M., Coonrod, S.A., Thompson, P.R.

(2015) ACS Chem Biol 10: 1043-1053

Released	2015-02-04
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Homo sapiens
Macromolecule	Protein-arginine deiminase type-2 (protein)
Unique Ligands	ACT, CA, MPD

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4N2G \| pdb_00004n2g	Download File View File

Crystal structure of Protein Arginine Deiminase 2 (D169A, 10 mM Ca2+)

Slade, D.J., Zhang, X., Fang, P., Dreyton, C.J., Zhang, Y., Gross, M.L., Guo, M., Coonrod, S.A., Thompson, P.R.

(2015) ACS Chem Biol 10: 1043-1053

Released	2015-02-04
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Homo sapiens
Macromolecule	Protein-arginine deiminase type-2 (protein)
Unique Ligands	ACT, CA, GOL, MPD