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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Thompson, R.F."

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Search Summary

This query matches 20 Structures.

Refinements

Structure Determination Methodology

experimental (20)

Scientific Name of Source Organism

	Cowpea mosaic virus (4)
	Homo sapiens (4)
	Bacillus thuringiensis (3)
	Rhodopseudomonas palustris CGA009 (2)
	Barley yellow dwarf virus (1)
	Betapolyomavirus hominis (1)
	Coxsackievirus A24 (1)
	Haemonchus contortus (1)
	Potato leafroll virus (1)
	Spinacia oleracea (1)

More...

Taxonomy

	Riboviria (7)
	Bacteria (6)
	Eukaryota (6)
	Monodnaviria (1)

Experimental Method

	ELECTRON MICROSCOPY (18)
	X-RAY DIFFRACTION (2)

Polymer Entity Type

Protein (20)

Refinement Resolution (Å)

	1.5 - 2.0 (1)
	2.0 - 2.5 (1)
	2.5 - 3.0 (2)
	3.0 - 3.5 (6)
	3.5 - 4.0 (4)
	4.0 - 4.5 (2)
	> 4.5 (4)

Release Date

	2015 - 2019 (9)
	2020 - 2024 (11)

Enzyme Classification Name

	Hydrolases (1)
	Transferases (2)
	Translocases (1)

Membrane Protein Annotation

	OPM (3)
	PDBTM (3)
	mpstruc (3)
	MemProtMD (1)

Symmetry Type

	Asymmetric (9)
	Cyclic (5)
	Icosahedral (6)
	Dihedral (1)

SCOP Classification

	Membrane and cell surface proteins and peptides (2)
	All beta proteins (4)

AllSelected

1 to 20 of 20 Structures

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5A32 \| pdb_00005a32	Download File View File

Electron cryo-microscopy of Cowpea Mosaic Virus containing RNA-1 (CPMVb)

Hesketh, E.L., Meshcheriakova, Y., Dent, K.C., Saxena, P., Thompson, R., Cockburn, J.J., Lomonossoff, G.P., Ranson, N.A.

(2015) Nat Commun 6: 10113-10113

Released	2015-12-23
Method	ELECTRON MICROSCOPY 3.44 Å
Organisms	Cowpea mosaic virus
Macromolecule	RNA2 POLYPROTEIN (protein)

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5A33 \| pdb_00005a33	Download File View File

Electron cryo-microscopy of Cowpea Mosaic Virus (CPMV) empty virus like particle (eVLP)

Hesketh, E.L., Meshcheriakova, Y., Dent, K.C., Saxena, P., Thompson, R., Cockburn, J.J., Lomonossoff, G.P., Ranson, N.A.

(2015) Nat Commun 6: 10113-10113

Released	2015-12-23
Method	ELECTRON MICROSCOPY 3.04 Å
Organisms	Cowpea mosaic virus
Macromolecule	RNA2 POLYPROTEIN (protein)

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5FUA \| pdb_00005fua	Download File View File

Cryo-EM of BK polyomavirus

Hurdiss, D.L., Morgan, E.L., Thompson, R.F., Prescott, E.L., Panou, M.M., Macdonald, A., Ranson, N.A.

(2016) Structure 24: 528

Released	2016-04-20
Method	ELECTRON MICROSCOPY 7.6 Å
Organisms	Betapolyomavirus hominis
Macromolecule	MAJOR CAPSID PROTEIN VP1 (protein)

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5MS1 \| pdb_00005ms1	Download File View File

Cowpea mosaic virus top component (CPMV-T) - naturally occurring empty particles

Hesketh, E.L., Meshcheriakova, Y., Thompson, R.F., Lomonossoff, G.P., Ranson, N.A.

(2017) Sci Rep 7: 539-539

Released	2017-07-19
Method	ELECTRON MICROSCOPY 4.25 Å
Organisms	Cowpea mosaic virus
Macromolecule	Large subunit of Cowpea music virus (protein) Small subunit of cowpea mosaic virus (protein)

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5MSH \| pdb_00005msh	Download File View File

Cowpea mosaic virus top component (CPMV-T) - naturally occurring empty particles

Hesketh, E.L., Meshcheriakova, Y., Thompson, R.F., Lomonossoff, G.P., Ranson, N.A.

(2017) Sci Rep 7: 539-539

Released	2017-07-19
Method	ELECTRON MICROSCOPY 4.25 Å
Organisms	Cowpea mosaic virus
Macromolecule	Cowpea mosaic virus large subunit (protein) Cowpea mosaic virus small subunit (protein)

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6HSV \| pdb_00006hsv	Download File View File

Engineered higher-order assembly of Cholera Toxin B subunits via the addition of C-terminal parallel coiled-coiled domains

Pearson, A.R., Turnbull, W.B., Ross, J.F., Trinh, C.H., Webb, M.E.

(2019) J Am Chem Soc 141: 5211-5219

Released	2019-03-20
Method	X-RAY DIFFRACTION 2.45 Å
Organisms	Vibrio cholerae
Macromolecule	Toxin B subunit (protein)
Unique Ligands	CL, MPD, PO4

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6ROW \| pdb_00006row	Download File View File

Haemonchus galactose containing glycoprotein complex

Scarff, C.A., Thompson, R.F., Newlands, G.F.J., Jamson, H., Kennaway, C., da Silva, V.J., Rabelo, E.M., Song, C.F., Trinick, J., Smith, W.D., Muench, S.P.

(2020) PLoS Pathog 16: e1008465-e1008465

Released	2020-03-25
Method	ELECTRON MICROSCOPY 4.5 Å
Organisms	Haemonchus contortus
Macromolecule	Cysteine Protease (protein) Parasite pepsinogen (protein) Putative zinc metallopeptidase (protein)

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6RQF \| pdb_00006rqf	Download File View File

3.6 Angstrom cryo-EM structure of the dimeric cytochrome b6f complex from Spinacia oleracea with natively bound thylakoid lipids and plastoquinone molecules

Malone, L.A., Qian, P., Mayneord, G.E., Hitchcock, A., Farmer, D., Thompson, R., Swainsbury, D.J.K., Ranson, N., Hunter, C.N., Johnson, M.P.

(2019) Nature 575: 535-539

Released	2019-11-13
Method	ELECTRON MICROSCOPY 3.58 Å
Organisms	Spinacia oleracea
Macromolecule	Unique protein chains: 8
Unique Ligands	6PL, BCR, CLA, FES, HEC, HEM, LMG, PGV, PL9, SQD

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6SCL \| pdb_00006scl	Download File View File

Cryo-EM Structure of Barley Yellow Dwarf Virus VLP

Byrne, M.J., Ranson, N.A.

(2019) Structure 27: 1761

Released	2019-10-02
Method	ELECTRON MICROSCOPY 3 Å
Organisms	Barley yellow dwarf virus
Macromolecule	Coat protein (protein)

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6SCO \| pdb_00006sco	Download File View File

Cryo-EM Structure of Potato Leaf Roll Virus VLP

Byrne, M.J., Ranson, N.A.

(2019) Structure 27: 1761

Released	2019-10-02
Method	ELECTRON MICROSCOPY 3.3 Å
Organisms	Potato leafroll virus
Macromolecule	Coat protein (protein)

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6YRF \| pdb_00006yrf	Download File View File

Vip3Bc1 tetramer

Thompson, R.F., Byrne, M.J., Iadanza, M.I., Arribas Perez, M., Maskell, D.P., George, R.M., Hesketh, E.L., Beales, P.A., Zack, M.D., Berry, C.

(2021) Nat Commun 12: 2791-2791

Released	2021-03-17
Method	ELECTRON MICROSCOPY 3.9 Å
Organisms	Bacillus thuringiensis
Macromolecule	Vegetative insecticidal protein (protein)

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6YRG \| pdb_00006yrg	Download File View File

Vip3Bc1 tetramer in processed, activated state

Thompson, R.F., Byrne, M.J., Iadanza, M.I.

(2021) Nat Commun 12: 2791-2791

Released	2021-03-17
Method	ELECTRON MICROSCOPY 4.8 Å
Organisms	Bacillus thuringiensis
Macromolecule	Vegetative insecticidal protein (protein)

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6Z5R \| pdb_00006z5r	Download File View File

RC-LH1(16) complex from Rhodopseudomonas palustris

Swainsbury, D.J.K., Qian, P., Hitchcock, A., Hunter, C.N.

(2021) Sci Adv 7:

Released	2021-01-13
Method	ELECTRON MICROSCOPY 2.8 Å
Organisms	Rhodopseudomonas palustris CGA009
Macromolecule	H subunit of photosynthetic reaction center complex (protein) Light-harvesting complex 1 alpha chain (protein) Light-harvesting complex 1 beta chain (protein) Reaction center protein L chain (protein) Reaction center protein M chain (protein)
Unique Ligands	6PL, BCL, BPH, CDL, CRT, FE, LMT, PGT, QAK, U10

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6Z5S \| pdb_00006z5s	Download File View File

RC-LH1(14)-W complex from Rhodopseudomonas palustris

Swainsbury, D.J.K., Qian, P., Hitchcock, A., Hunter, C.N.

(2021) Sci Adv 7:

Released	2021-01-13
Method	ELECTRON MICROSCOPY 2.65 Å
Organisms	Rhodopseudomonas palustris CGA009
Macromolecule	Unique protein chains: 6
Unique Ligands	6PL, BCL, BPH, CDL, CRT, FE, LMT, PGT, QAK, U10

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7NTX \| pdb_00007ntx	Download File View File

Vip3Bc1 tetramer in processed, activated state

Thompson, R.F., Byrne, M.J., Iadanza, M.I.

(2021) Nat Commun 12: 2791-2791

Released	2021-04-14
Method	ELECTRON MICROSCOPY 4.75 Å
Organisms	Bacillus thuringiensis
Macromolecule	Vegetative insecticidal protein (protein)

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7OJ7 \| pdb_00007oj7	Download File View File

Crystal structure of human coxsackievirus A24v in complex with a pentavalent N-acetylneuraminic acid conjugate

Zocher, G., Stehle, T.

(2021) Int J Mol Sci 22:

Released	2021-10-13
Method	X-RAY DIFFRACTION 1.78 Å
Organisms	Coxsackievirus A24
Macromolecule	Capsid protein VP1 (protein) Capsid protein VP2 (protein) Capsid protein VP3 (protein) Capsid protein VP4 (protein)
Unique Ligands	0H0, CA, CL

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7OLE \| pdb_00007ole	Download File View File

Cryo-EM structure of the TELO2-TTI1-TTI2-RUVBL1-RUVBL2 complex

Pal, M., Llorca, O., Pearl, L.

(2021) Cell Rep 36: 109317-109317

Released	2021-07-07
Method	ELECTRON MICROSCOPY 3.41 Å
Organisms	Homo sapiens
Macromolecule	RuvB-like 1 (protein) RuvB-like 2 (protein) TELO2-interacting protein 1 homolog,TELO2-interacting protein 1 homolog,TTI1 (protein) TELO2-interacting protein 2,TELO2-interacting protein 2,TTI2 (protein) Telomere length regulation protein TEL2 homolog (protein)
Unique Ligands	ADP

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8BYA \| pdb_00008bya	Download File View File

Cryo-EM structure of SKP1-SKP2-CKS1-CDK2-CyclinA-p27KIP1 Complex

Rowland, R.J., Salamina, M., Endicott, J.A., Noble, M.E.

(2023) Sci Rep 13: 10718-10718

Released	2023-06-28
Method	ELECTRON MICROSCOPY 3.38 Å
Organisms	Homo sapiens
Macromolecule	Unique protein chains: 7

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8BYL \| pdb_00008byl	Download File View File

Cryo-EM structure of SKP1-SKP2-CKS1 from the SCFSKP2 E3 ligase complex

Rowland, R.J., Salamina, M., Endicott, J.A., Noble, M.E.M.

(2023) Sci Rep 13: 10718-10718

Released	2023-06-28
Method	ELECTRON MICROSCOPY 3.5 Å
Organisms	Homo sapiens
Macromolecule	Cyclin-dependent kinase inhibitor 1B (protein) Cyclin-dependent kinases regulatory subunit 1 (protein) S-phase kinase-associated protein 1 (protein) S-phase kinase-associated protein 2 (protein)

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8BZO \| pdb_00008bzo	Download File View File

Cryo-EM structure of CDK2-CyclinA in complex with p27 from the SCFSKP2 E3 ligase Complex

Rowland, R.J., Salamina, M., Endicott, J.A., Noble, M.E.

(2023) Sci Rep 13: 10718-10718

Released	2023-06-28
Method	ELECTRON MICROSCOPY 3.5 Å
Organisms	Homo sapiens
Macromolecule	Cyclin-A2 (protein) Cyclin-dependent kinase 2 (protein) Cyclin-dependent kinase inhibitor 1B (protein)

1 to 20 of 20 Structures

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

5A32 | pdb_00005a32

Electron cryo-microscopy of Cowpea Mosaic Virus containing RNA-1 (CPMVb)

5A33 | pdb_00005a33

Electron cryo-microscopy of Cowpea Mosaic Virus (CPMV) empty virus like particle (eVLP)

5FUA | pdb_00005fua

Cryo-EM of BK polyomavirus

5MS1 | pdb_00005ms1

Cowpea mosaic virus top component (CPMV-T) - naturally occurring empty particles

5MSH | pdb_00005msh

Cowpea mosaic virus top component (CPMV-T) - naturally occurring empty particles

6HSV | pdb_00006hsv

Engineered higher-order assembly of Cholera Toxin B subunits via the addition of C-terminal parallel coiled-coiled domains

6ROW | pdb_00006row

Haemonchus galactose containing glycoprotein complex

6RQF | pdb_00006rqf

3.6 Angstrom cryo-EM structure of the dimeric cytochrome b6f complex from Spinacia oleracea with natively bound thylakoid lipids and plastoquinone molecules

6SCL | pdb_00006scl

Cryo-EM Structure of Barley Yellow Dwarf Virus VLP

6SCO | pdb_00006sco

Cryo-EM Structure of Potato Leaf Roll Virus VLP

6YRF | pdb_00006yrf

Vip3Bc1 tetramer

6YRG | pdb_00006yrg

Vip3Bc1 tetramer in processed, activated state

6Z5R | pdb_00006z5r

RC-LH1(16) complex from Rhodopseudomonas palustris

6Z5S | pdb_00006z5s

RC-LH1(14)-W complex from Rhodopseudomonas palustris

7NTX | pdb_00007ntx

Vip3Bc1 tetramer in processed, activated state

7OJ7 | pdb_00007oj7

Crystal structure of human coxsackievirus A24v in complex with a pentavalent N-acetylneuraminic acid conjugate

7OLE | pdb_00007ole

Cryo-EM structure of the TELO2-TTI1-TTI2-RUVBL1-RUVBL2 complex

8BYA | pdb_00008bya

Cryo-EM structure of SKP1-SKP2-CKS1-CDK2-CyclinA-p27KIP1 Complex

8BYL | pdb_00008byl

Cryo-EM structure of SKP1-SKP2-CKS1 from the SCFSKP2 E3 ligase complex

8BZO | pdb_00008bzo

Cryo-EM structure of CDK2-CyclinA in complex with p27 from the SCFSKP2 E3 ligase Complex

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

5A32 | pdb_00005a32

5A33 | pdb_00005a33

5FUA | pdb_00005fua

5MS1 | pdb_00005ms1

5MSH | pdb_00005msh

6HSV | pdb_00006hsv

6ROW | pdb_00006row

6RQF | pdb_00006rqf

6SCL | pdb_00006scl

6SCO | pdb_00006sco

6YRF | pdb_00006yrf

6YRG | pdb_00006yrg

6Z5R | pdb_00006z5r

6Z5S | pdb_00006z5s

7NTX | pdb_00007ntx

7OJ7 | pdb_00007oj7

7OLE | pdb_00007ole

8BYA | pdb_00008bya

8BYL | pdb_00008byl

8BZO | pdb_00008bzo