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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Trinh, C.H."

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Search Summary

This query matches 92 Structures.

Refinements

Structure Determination Methodology

experimental (92)

Scientific Name of Source Organism

	Homo sapiens (33)
	Mycothermus thermophilus (13)
	synthetic construct (12)
	Caenorhabditis elegans (8)
	Escherichia coli (7)
	Staphylococcus aureus subsp. aureus NCTC 8325 (7)
	Mus musculus (6)
	Human respiratory syncytial virus A2 (4)
	Streptomyces antibioticus (3)
	Escherichia coli BL21(DE3) (2)

More...

Taxonomy

	Eukaryota (61)
	Bacteria (23)
	other sequences (12)
	Riboviria (8)

Experimental Method

X-RAY DIFFRACTION (92)

Polymer Entity Type

	Protein (92)
	RNA (1)

Refinement Resolution (Å)

	1.0 - 1.5 (4)
	1.5 - 2.0 (48)
	2.0 - 2.5 (30)
	2.5 - 3.0 (9)
	> 4.5 (1)

Release Date

	1995 - 1999 (3)
	2000 - 2004 (4)
	2005 - 2009 (9)
	2010 - 2014 (27)
	2015 - 2019 (25)
	2020 - 2024 (24)

Enzyme Classification Name

	Oxidoreductases (24)
	Lyases (15)
	Transferases (9)
	Hydrolases (4)
	Translocases (1)

Membrane Protein Annotation

	MemProtMD (1)
	OPM (1)
	PDBTM (1)

Symmetry Type

	Asymmetric (33)
	Cyclic (25)
	Dihedral (37)
	Icosahedral (2)

SCOP Classification

	Alpha and beta proteins (a/b) (17)
	Alpha and beta proteins (a+b) (17)
	Artifacts (23)
	All beta proteins (12)
	All alpha proteins (13)

AllSelected

1 to 25 of 92 Structures

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1BFV \| pdb_00001bfv	Download File View File

MONOCLONAL ANTIBODY FRAGMENT FV4155 FROM E. COLI

Trinh, C.H., Phillips, S.E.V.

(1997) Structure 5: 937-948

Released	1997-12-03
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Mus musculus
Macromolecule	FV4155 (protein)
Unique Ligands	STG, ZN

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1CFV \| pdb_00001cfv	Download File View File

MONOCLONAL ANTIBODY FRAGMENT FV4155 FROM E. COLI

Trinh, C.H., Phillips, S.E.V.

(1997) Structure 5: 937-948

Released	1997-10-15
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Mus musculus
Macromolecule	MONOCLONAL ANTIBODY FV4155 (protein)
Unique Ligands	E3G, ZN

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1LDS \| pdb_00001lds	Download File View File

Crystal Structure of monomeric human beta-2-microglobulin

Trinh, C.H., Smith, D.P., Kalverda, A.P., Phillips, S.E.V., Radford, S.E.

(2002) Proc Natl Acad Sci U S A 99: 9771-9776

Released	2002-07-31
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Homo sapiens
Macromolecule	beta-2-microglobulin (protein)
Unique Ligands	NA

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1QY0 \| pdb_00001qy0	Download File View File

Thermodynamics of Binding of 2-methoxy-3-isopropylpyrazine and 2-methoxy-3-isobutylpyrazine to the Major Urinary Protein

Bingham, R.J., Findlay, J.B.C., Hsieh, S.-Y., Kalverda, A.P., Kjellberg, A., Perazzolo, C., Phillips, S.E.V., Seshadri, K., Trinh, C.H., Turnbull, W.B., Bodenhausen, G., Homans, S.W.

(2004) J Am Chem Soc 126: 1675-1681

Released	2004-02-24
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Mus musculus
Macromolecule	Major urinary protein (protein)
Unique Ligands	CD, GOL, NA

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1QY1 \| pdb_00001qy1	Download File View File

Thermodynamics of Binding of 2-methoxy-3-isopropylpyrazine and 2-methoxy-3-isobutylpyrazine to the Major Urinary Protein

Bingham, R.J., Findlay, J.B.C., Hsieh, S.-Y., Kalverda, A.P., Kjellberg, A., Perazzolo, C., Phillips, S.E.V., Seshadri, K., Trinh, C.H., Turnbull, W.B., Bodenhausen, G., Homans, S.W.

(2004) J Am Chem Soc 126: 1675-1681

Released	2004-02-24
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Mus musculus
Macromolecule	Major Urinary Protein (protein)
Unique Ligands	CD, NA, PRZ

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1QY2 \| pdb_00001qy2	Download File View File

Thermodynamics of Binding of 2-methoxy-3-isopropylpyrazine and 2-methoxy-3-isobutylpyrazine to the Major Urinary Protein

Bingham, R.J., Findlay, J.B.C., Hsieh, S.-Y., Kalverda, A.P., Kjellberg, A., Perazzolo, C., Phillips, S.E.V., Seshadri, K., Trinh, C.H., Turnbull, W.B., Bodenhausen, G., Homans, S.W.

(2004) J Am Chem Soc 126: 1675-1681

Released	2004-02-24
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Mus musculus
Macromolecule	Major Urinary Protein (protein)
Unique Ligands	CD, IPZ, NA

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2BFV \| pdb_00002bfv	Download File View File

MONOCLONAL ANTIBODY FRAGMENT FV4155 FROM E. COLI

Trinh, C.H., Phillips, S.E.V.

(1997) Structure 5: 937-948

Released	1997-12-03
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Mus musculus
Macromolecule	FV4155 (protein)
Unique Ligands	STG

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2HQQ \| pdb_00002hqq	Download File View File

Crystal structure of human ketohexokinase complexed to different sugar molecules

Trinh, C.H., Asipu, A., Bonthron, D.T., Phillips, S.E.V.

(2009) Acta Crystallogr D Biol Crystallogr 65: 201-211

Released	2007-07-10
Method	X-RAY DIFFRACTION 1.86 Å
Organisms	Homo sapiens
Macromolecule	Ketohexokinase (protein)
Unique Ligands	SO4

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2HW1 \| pdb_00002hw1	Download File View File

Crystal structure of human ketohexokinase complexed to different sugar molecules

Trinh, C.H., Asipu, A., Bonthron, D.T., Phillips, S.E.V.

(2009) Acta Crystallogr D Biol Crystallogr 65: 201-211

Released	2007-07-10
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens
Macromolecule	Ketohexokinase (protein)
Unique Ligands	ANP, FRU, GOL, SO4

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2HWV \| pdb_00002hwv	Download File View File

Crystal structure of an essential response regulator DNA binding domain, VicRc in Enterococcus faecalis, a member of the YycF subfamily.

Trinh, C.H., Liu, Y., Phillips, S.E.V., Phillips-Jones, M.K.

(2007) Acta Crystallogr D Biol Crystallogr 63: 266-269

Released	2007-01-23
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Enterococcus faecalis V583
Macromolecule	DNA-binding response regulator VicR (protein)
Unique Ligands	SO4

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2Q81 \| pdb_00002q81	Download File View File

Crystal Structure of the Miz-1 BTB/POZ domain

Stead, M.A., Trinh, C.H., Garnett, J.A., Carr, S.B., Edwards, T.A., Wright, S.C.

(2007) J Mol Biology 373: 820-826

Released	2007-11-06
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens
Macromolecule	Miz-1 protein (protein)
Unique Ligands	PG4

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2WKJ \| pdb_00002wkj	Download File View File

Crystal structure of the E192N mutant of E. Coli N-acetylneuraminic acid lyase in complex with pyruvate at 1.45A resolution in space group P212121

Campeotto, I., Carr, S.B., Trinh, C.H., Nelson, A.S., Berry, A., Phillips, S.E.V., Pearson, A.R.

(2009) Acta Crystallogr Sect F Struct Biol Cryst Commun 65: 1088-1090

Released	2009-12-01
Method	X-RAY DIFFRACTION 1.45 Å
Organisms	Escherichia coli
Macromolecule	N-ACETYLNEURAMINATE LYASE (protein)
Unique Ligands	1PE, PYR

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2WNN \| pdb_00002wnn	Download File View File

Structure of wild type E. coli N-acetylneuraminic acid lyase in complex with pyruvate in space group P21

Campeotto, I., Bolt, A.H., Harman, T.A., Trinh, C.H., Dennis, C.A., Phillips, S.E.V., Pearson, A.R., Nelson, A., Berry, A.

(2010) J Mol Biology 404: 56

Released	2010-08-25
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	Escherichia coli
Macromolecule	N-ACETYLNEURAMINATE LYASE (protein)
Unique Ligands	1PE, NA

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2WNQ \| pdb_00002wnq	Download File View File

Structure of the E192N mutant of E. coli N-acetylneuraminic acid lyase in space group P21

Campeotto, I., Bolt, A.H., Harman, T.A., Trinh, C.H., Dennis, C.A., Phillips, S.E.V., Pearson, A.R., Nelson, A., Berry, A.

(2010) J Mol Biology 404: 56

Released	2010-08-25
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Escherichia coli
Macromolecule	N-ACETYLNEURAMINATE LYASE (protein)
Unique Ligands	CL

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2WNZ \| pdb_00002wnz	Download File View File

Structure of the E192N mutant of E. coli N-acetylneuraminic acid lyase in complex with pyruvate in space group P21 crystal form I

Campeotto, I., Bolt, A.H., Harman, T.A., Trinh, C.H., Dennis, C.A., Phillips, S.E.V., Pearson, A.R., Nelson, A., Berry, A.

(2010) J Mol Biology 404: 56

Released	2010-08-25
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Escherichia coli BL21(DE3)
Macromolecule	N-ACETYLNEURAMINATE LYASE (protein)
Unique Ligands	2OP, ETX, LAC

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2WO5 \| pdb_00002wo5	Download File View File

Structure of wild type E. coli N-acetylneuraminic acid lyase in space group P21 crystal form I

Campeotto, I., Bolt, A.H., Harman, T.A., Trinh, C.H., Dennis, C.A., Phillips, S.E.V., Pearson, A.R., Nelson, A., Berry, A.

(2010) J Mol Biology 404: 56

Released	2010-08-25
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Escherichia coli BL21(DE3)
Macromolecule	N-ACETYLNEURAMINATE LYASE (protein)

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2WPB \| pdb_00002wpb	Download File View File

Crystal structure of the E192N mutant of E. Coli N-acetylneuraminic acid lyase in complex with pyruvate and the inhibitor (2R,3R)-2,3,4- trihydroxy-N,N-dipropylbutanamide in space group P21 crystal form I

Campeotto, I., Bolt, A.H., Harman, T.A., Trinh, C.H., Dennis, C.A., Phillips, S.E.V., Pearson, A.R., Nelson, A., Berry, A.

(2010) J Mol Biology 404: 56

Released	2010-08-25
Method	X-RAY DIFFRACTION 2.05 Å
Organisms	Escherichia coli
Macromolecule	N-ACETYLNEURAMINATE LYASE (protein)
Unique Ligands	ZZI

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2XFW \| pdb_00002xfw	Download File View File

Structure of the E192N mutant of E. coli N-acetylneuraminic acid lyase in complex with pyruvate in crystal form III

Campeotto, I., Murshudov, G.N., Bolt, A.H., Trinh, C.H., Phillips, S.E.V., Nelson, A., Pearson, A.R., Berry, A.

To be published

Released	2010-09-22
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	Escherichia coli
Macromolecule	N-ACETYLNEURAMINIC ACID LYASE (protein)
Unique Ligands	1PE, PYR

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2YIU \| pdb_00002yiu	Download File View File

X-ray structure of the dimeric cytochrome BC1 complex from the soil bacterium paracoccus denitrificans at 2.7 angstrom resolution

Kleinschroth, T., Castellani, M., Trinh, C.H., Morgner, N., Brutschy, B., Ludwig, B., Hunte, C.

(2011) Biochim Biophys Acta 1807: 1606

Released	2011-10-26
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Paracoccus denitrificans PD1222
Macromolecule	CYTOCHROME B (protein) CYTOCHROME C1, HEME PROTEIN (protein) UBIQUINOL-CYTOCHROME C REDUCTASE IRON-SULFUR SUBUNIT (protein)
Unique Ligands	FES, HEC, HEM, SMA

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3B3L \| pdb_00003b3l	Download File View File

Crystal structures of alternatively-spliced isoforms of human ketohexokinase

Trinh, C.H., Asipu, A., Bonthron, D.T., Phillips, S.E.V.

To be published

Released	2008-10-28
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Homo sapiens
Macromolecule	Ketohexokinase (protein)

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3DC5 \| pdb_00003dc5	Download File View File

Crystal Structure of a manganese superoxide dismutases from Caenorhabditis elegans

Trinh, C.H., Hunter, T., Stewart, E.E., Phillips, S.E.V., Hunter, G.J.

(2008) Acta Crystallogr Sect F Struct Biol Cryst Commun 64: 1110-1114

Released	2009-06-09
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Caenorhabditis elegans
Macromolecule	Superoxide dismutase [Mn] 2 (protein)
Unique Ligands	MLI, MN

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3DC6 \| pdb_00003dc6	Download File View File

Crystal Structure of a manganese superoxide dismutases from Caenorhabditis elegans

Trinh, C.H., Hunter, T., Stewart, E.E., Phillips, S.E.V., Hunter, G.J.

(2008) Acta Crystallogr Sect F Struct Biol Cryst Commun 64: 1110-1114

Released	2009-06-09
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Caenorhabditis elegans
Macromolecule	Superoxide dismutase [Mn] 1 (protein)
Unique Ligands	MN, SO4

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3E4U \| pdb_00003e4u	Download File View File

Crystal Structure of the Wild-Type Human BCL6 BTB/POZ Domain

Stead, M.A., Rosbrook, G.O., Hadden, J.M., Trinh, C.H., Carr, S.B., Wright, S.C.

(2008) Acta Crystallogr Sect F Struct Biol Cryst Commun 64: 1101-1104

Released	2008-12-09
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens
Macromolecule	B-cell lymphoma 6 protein (protein)

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3S4G \| pdb_00003s4g	Download File View File

Low Resolution Structure of STNV complexed with RNA

Lane, S.W., Dennis, C.A., Lane, C.L., Trinh, C.H., Rizkallah, P.J., Stockley, P.G., Phillips, S.E.V.

(2011) J Mol Biology 413: 41-50

Released	2011-08-03
Method	X-RAY DIFFRACTION 6 Å
Organisms	Satellite tobacco necrosis virus 1 synthetic construct
Macromolecule	Capsid protein (protein) RNA (5'-R(PAPAPA)-3') (nucleic acid) RNA (5'-R(PUPUPUP*U)-3') (nucleic acid)

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4AH7 \| pdb_00004ah7	Download File View File

Structure of Wild Type Stapylococcus aureus N-acetylneuraminic acid lyase in complex with pyruvate

Timms, N., Poyakova, A., Windle, C.L., Trinh, C.H., Nelson, A., Pearson, A.R., Berry, A.

(2013) Chembiochem 14: 474

Released	2013-01-23
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Staphylococcus aureus subsp. aureus NCTC 8325
Macromolecule	N-ACETYLNEURAMINATE LYASE (protein)

1 to 25 of 92 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1BFV | pdb_00001bfv

1CFV | pdb_00001cfv

1LDS | pdb_00001lds

1QY0 | pdb_00001qy0

1QY1 | pdb_00001qy1

1QY2 | pdb_00001qy2

2BFV | pdb_00002bfv

2HQQ | pdb_00002hqq

2HW1 | pdb_00002hw1

2HWV | pdb_00002hwv

2Q81 | pdb_00002q81

2WKJ | pdb_00002wkj

2WNN | pdb_00002wnn

2WNQ | pdb_00002wnq

2WNZ | pdb_00002wnz

2WO5 | pdb_00002wo5

2WPB | pdb_00002wpb

2XFW | pdb_00002xfw

2YIU | pdb_00002yiu

3B3L | pdb_00003b3l

3DC5 | pdb_00003dc5

3DC6 | pdb_00003dc6

3E4U | pdb_00003e4u

3S4G | pdb_00003s4g

4AH7 | pdb_00004ah7