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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Varani, G."

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Search Summary

This query matches 117 Structures.

Refinements

Structure Determination Methodology

experimental (117)

Scientific Name of Source Organism

	Homo sapiens (27)
	Saccharomyces cerevisiae (10)
	synthetic construct (7)
	Aspergillus fischeri (5)
	Neisseria meningitidis (4)
	Burkholderia pseudomallei (3)
	Human immunodeficiency virus 1 (3)
	Saccharomyces cerevisiae S288C (3)
	West Nile virus (3)
	dengue virus type 1 (3)

More...

Taxonomy

	Eukaryota (50)
	Bacteria (24)
	Riboviria (12)
	other sequences (7)
	Archaea (2)
	Duplodnaviria (1)

Experimental Method

	SOLUTION NMR (108)
	X-RAY DIFFRACTION (9)

Polymer Entity Type

	Protein (80)
	RNA (51)

Refinement Resolution (Å)

	0.5 - 1.0 (1)
	1.5 - 2.0 (2)
	2.0 - 2.5 (2)
	2.5 - 3.0 (4)

Release Date

	1995 - 1999 (9)
	2000 - 2004 (13)
	2005 - 2009 (21)
	2010 - 2014 (22)
	2015 - 2019 (39)
	2020 - 2024 (13)

Enzyme Classification Name

	Isomerases (6)
	Hydrolases (3)
	Transferases (2)

Symmetry Type

	Asymmetric (69)
	Cyclic (6)

SCOP Classification

	Alpha and beta proteins (a+b) (15)
	Artifacts (10)
	All alpha proteins (7)
	Alpha and beta proteins (a/b) (4)
	Small proteins (4)
	All beta proteins (2)
	Designed proteins (1)

AllSelected

1 to 25 of 117 Structures

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1AJU \| pdb_00001aju	Download File View File

HIV-2 TAR-ARGININAMIDE COMPLEX, NMR, 20 STRUCTURES

Brodsky, A.S., Williamson, J.R.

(1997) J Mol Biology 267: 624-639

Released	1997-12-17
Method	SOLUTION NMR
Macromolecule	TAR RNA (nucleic acid)
Unique Ligands	ARG

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1AKX \| pdb_00001akx	Download File View File

HIV-2 TRANS ACTIVATING REGION RNA COMPLEX WITH ARGININAMIDE, NMR, MINIMIZED AVERAGE STRUCTURE

Brodsky, A.S., Williamson, J.R.

(1997) J Mol Biology 267: 624-639

Released	1997-11-19
Method	SOLUTION NMR
Macromolecule	TAR RNA (nucleic acid)
Unique Ligands	ARG

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1ANR \| pdb_00001anr	Download File View File

CIS-ACTING RNA REGULATORY ELEMENT (HIV-1 TAR), NMR, 20 STRUCTURES

Aboul-Ela, F., Varani, G., Karn, J.

(1996) Nucleic Acids Res 24: 3974-3981

Released	1997-01-11
Method	SOLUTION NMR
Macromolecule	RNA REGULATORY ELEMENT TAR (nucleic acid)

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1ARJ \| pdb_00001arj	Download File View File

ARG-BOUND TAR RNA, NMR

Aboul-Ela, F., Varani, G., Karn, J.

(1995) J Mol Biology 253: 313-332

Released	1996-11-08
Method	SOLUTION NMR
Macromolecule	TAR RNA (nucleic acid)
Unique Ligands	ARG

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1AUD \| pdb_00001aud	Download File View File

U1A-UTRRNA, NMR, 31 STRUCTURES

Allain, F.H.-T., Gubser, C.C., Howe, P.W.A., Nagai, K., Neuhaus, D., Varani, G.

(1997) EMBO J 16: 5764-5774

Released	1998-02-25
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	U1A 102 (protein) RNA 3UTR (nucleic acid)

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1DZ5 \| pdb_00001dz5	Download File View File

The NMR structure of the 38KDa U1A protein-PIE RNA complex reveals the basis of cooperativity in regulation of polyadenylation by human U1A protein

Varani, L., Gunderson, S.I., Mattaj, I.W., Kay, L.E., Neuhaus, D., Varani, G.

(2000) Nat Struct Biol 7: 329

Released	2000-03-29
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A (protein) PIE, RNA (5'-R(GPAPGPAPCPAPUPUPGPCPAPCPCP CPGPGPAPGPUPCPUPC)-3') (nucleic acid)

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1EI2 \| pdb_00001ei2	Download File View File

STRUCTURAL BASIS FOR RECOGNITION OF THE RNA MAJOR GROOVE IN THE TAU EXON 10 SPLICING REGULATORY ELEMENT BY AMINOGLYCOSIDE ANTIBIOTICS

Varani, L., Spillantini, M.G., Goedert, M., Varani, G.

(2000) Nucleic Acids Res 28: 710-719

Released	2000-03-06
Method	SOLUTION NMR
Macromolecule	TAU EXON 10 SRE RNA (nucleic acid)
Unique Ligands	NMY

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1EKZ \| pdb_00001ekz	Download File View File

NMR STRUCTURE OF THE COMPLEX BETWEEN THE THIRD DSRBD FROM DROSOPHILA STAUFEN AND A RNA HAIRPIN

Ramos, A., Grunert, S., Bycroft, M., St Johnston, D., Varani, G.

(2000) EMBO J 19: 997-1009

Released	2000-08-21
Method	SOLUTION NMR
Organisms	Drosophila melanogaster
Macromolecule	MATERNAL EFFECT PROTEIN (STAUFEN) (protein) STAUFEN DOUBLE-STRANDED RNA BINDING DOMAIN (nucleic acid)

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1FHT \| pdb_00001fht	Download File View File

RNA-BINDING DOMAIN OF THE U1A SPLICEOSOMAL PROTEIN U1A117, NMR, 43 STRUCTURES

Allain, F.H.-T., Gubser, C.C., Howe, P.W.A., Nagai, K., Neuhaus, D., Varani, G.

(1996) J Mol Biology 257: 398-411

Released	1996-07-11
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A (protein)

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1HLX \| pdb_00001hlx	Download File View File

P1 HELIX NUCLEIC ACIDS (DNA/RNA) RIBONUCLEIC ACID

Allain, F.H.-T., Varani, G.

(1995) J Mol Biology 250: 333-353

Released	1995-09-15
Method	SOLUTION NMR
Macromolecule	RNA (5'-R(GPGPGPAPUPAPAPCPUPUPCPGPGPUPUPGPUPCPCPC)-3') (nucleic acid)

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1IKD \| pdb_00001ikd	Download File View File

ACCEPTOR STEM, NMR, 30 STRUCTURES

Ramos, A., Varani, G.

(1997) Nucleic Acids Res 25: 2083-2090

Released	1997-04-01
Method	SOLUTION NMR
Macromolecule	TRNA ALA ACCEPTOR STEM (nucleic acid)

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1KP7 \| pdb_00001kp7	Download File View File

Conserved RNA Structure within the HCV IRES eIF3 Binding Site

Gallego, J., Klinck, R., Collier, A.J., Cole, P.T., Harris, S.J., Harrison, G.P., Aboul-ela, F., Walker, S., Varani, G.

(2002) Nat Struct Biol 9: 375-380

Released	2002-04-10
Method	SOLUTION NMR
Macromolecule	Hepatitis C Virus Internal Ribosome Entry Site Fragment (nucleic acid)

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1M5L \| pdb_00001m5l	Download File View File

Structure of wild-type and mutant internal loops from the SL-1 domain of the HIV-1 packaging signal

Gallego, J., Greatorex, J., Varani, G., Lever, A.

(2002) J Mol Biology 322: 543-557

Released	2002-09-18
Method	SOLUTION NMR
Macromolecule	modified HIV-1 packaging signal stem-loop 1 RNA (nucleic acid)

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1M82 \| pdb_00001m82	Download File View File

SOLUTION STRUCTURE OF THE COMPLEMENTARY RNA PROMOTER OF INFLUENZA A VIRUS

Park, C.-J., Bae, S.-H., Lee, M.-K., Varani, G., Choi, B.-S.

(2003) Nucleic Acids Res 31: 2824-2832

Released	2003-06-03
Method	SOLUTION NMR
Macromolecule	RNA (25-MER): THE COMPLEMENTARY RNA PROMOTER OF INFLUENZA A VIRUS (nucleic acid)

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1OQ0 \| pdb_00001oq0	Download File View File

P6.1 stem loop from the activation domain of hTR

Leeper, T., Leulliot, N., Varani, G.

(2003) Nucleic Acids Res 31: 2614-2621

Released	2003-05-13
Method	SOLUTION NMR
Macromolecule	P6.1 RNA hairpin from hTR (nucleic acid)

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1P1T \| pdb_00001p1t	Download File View File

NMR Structure of the N-terminal RRM domain of Cleavage stimulation factor 64 KDa subunit

Perez-Canadillas, J.M., Varani, G.

(2003) EMBO J 22: 2821-2830

Released	2003-08-12
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Cleavage stimulation factor, 64 kDa subunit (protein)

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1QC8 \| pdb_00001qc8	Download File View File

NMR STRUCTURE OF TAU EXON 10 SPLICING REGULATORY ELEMENT RNA

Varani, L., Spillantini, M.G., Klug, A., Goedert, M., Varani, G.

(1999) Proc Natl Acad Sci U S A 96: 8229-8234

Released	1999-08-31
Method	SOLUTION NMR
Macromolecule	TAU EXON 10 SPLICING REGULATORY ELEMENT RNA (nucleic acid)

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1QYS \| pdb_00001qys	Download File View File

Crystal structure of Top7: A computationally designed protein with a novel fold

Kuhlman, B., Dantas, G., Ireton, G.C., Varani, G., Stoddard, B.L., Baker, D.

(2003) Science 302: 1364-1368

Released	2003-11-25
Method	X-RAY DIFFRACTION 2.5 Å
Macromolecule	TOP7 (protein)

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1T4N \| pdb_00001t4n	Download File View File

Solution structure of Rnt1p dsRBD

Leulliot, N., Quevillon-Cheruel, S., Graille, M., van Tilbeurgh, H., Leeper, T.C., Godin, K.S., Edwards, T.E., Sigurdsson, S.T., Rozenkrants, N., Nagel, R.J., Ares, M., Varani, G.

(2004) EMBO J 23: 2468-2477

Released	2004-07-13
Method	SOLUTION NMR
Organisms	Saccharomyces cerevisiae
Macromolecule	Ribonuclease III (protein)

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1T4O \| pdb_00001t4o	Download File View File

Crystal structure of rnt1p dsRBD

Leulliot, N., Quevillon-Cheruel, S., Graille, M., van Tilbeurgh, H., Leeper, T.C., Godin, K.S., Edwards, T.E., Sigurdsson, S.T., Rozenkrants, N., Nagel, R.J., Ares Jr., M., Varani, G.

(2004) EMBO J 23: 2468-2477

Released	2004-06-22
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	Ribonuclease III (protein)

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1UUD \| pdb_00001uud	Download File View File

NMR structure of a synthetic small molecule, rbt203, bound to HIV-1 TAR RNA

Davis, B., Afshar, M., Varani, G., Karn, J., Murchie, A.I.H., Lentzen, G., Drysdale, M.J., Potter, A.J., Bower, J., Aboul-Ela, F.

(2004) J Mol Biology 336: 343

Released	2004-03-15
Method	SOLUTION NMR
Organisms	HIV-1 M:B_HXB2R
Macromolecule	RNA (5'-(GPGPCPAPGPAPUPCPUPGPAPGP CPCPUPGPGPGPAPGPCPUPCPUPCPUPGPCP*C) -3') (nucleic acid)
Unique Ligands	P14

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1UUI \| pdb_00001uui	Download File View File

NMR structure of a synthetic small molecule, rbt158, bound to HIV-1 TAR RNA

Davis, B., Afshar, M., Varani, G., Karn, J., Murchie, A.I.H., Lentzen, G., Drysdale, M.J., Potter, A.J., Bower, J., Aboul-Ela, F.

(2004) J Mol Biology 336: 343

Released	2004-02-12
Method	SOLUTION NMR
Organisms	Human immunodeficiency virus type 1 (CLONE 12)
Macromolecule	5'-R(GPGPCPAPGPAPUPCPUPGPAPGPCP CPUPGPGPGPAPGPCPUPCPUPCPUPGPCP*C)-3' (nucleic acid)
Unique Ligands	P12