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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Walker, D."

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Search Summary

This query matches 50 Structures.

Refinements

Structure Determination Methodology

experimental (50)

Scientific Name of Source Organism

	Homo sapiens (20)
	Escherichia coli (6)
	Serratia sp. FS14 (6)
	Escherichia coli K-12 (5)
	Pseudomonas aeruginosa PAO1 (5)
	Mus musculus (4)
	Pseudomonas aeruginosa str. C 1433 (3)
	Pseudomonas syringae pv. tomato str. DC3000 (3)
	Pectobacterium brasiliense PBR1692 (2)
	Arabidopsis thaliana (1)

More...

Taxonomy

	Bacteria (33)
	Eukaryota (22)
	unclassified sequences (1)

Experimental Method

	X-RAY DIFFRACTION (49)
	SOLUTION NMR (1)

Polymer Entity Type

Protein (50)

Refinement Resolution (Å)

	1.0 - 1.5 (3)
	1.5 - 2.0 (13)
	2.0 - 2.5 (18)
	2.5 - 3.0 (11)
	3.0 - 3.5 (3)
	3.5 - 4.0 (1)

Release Date

	2000 - 2004 (3)
	2005 - 2009 (5)
	2010 - 2014 (11)
	2015 - 2019 (18)
	2020 - 2024 (13)

Enzyme Classification Name

	Transferases (9)
	Hydrolases (6)
	Oxidoreductases (3)
	Ligases (2)
	Lyases (2)

Membrane Protein Annotation

	OPM (5)
	MemProtMD (3)
	PDBTM (3)
	mpstruc (1)

Symmetry Type

	Asymmetric (43)
	Cyclic (13)

SCOP Classification

	Alpha and beta proteins (a+b) (9)
	Alpha and beta proteins (a/b) (6)
	Artifacts (8)
	All alpha proteins (2)
	All beta proteins (3)

AllSelected

1 to 25 of 50 Structures

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1E44 \| pdb_00001e44	Download File View File

ribonuclease domain of colicin E3 in complex with its immunity protein

Carr, S., Walker, D., James, R., Kleanthous, C., Hemmings, A.M.

(2000) Structure 8: 949

Released	2001-06-28
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Escherichia coli
Macromolecule	COLICIN E3 (protein) IMMUNITY PROTEIN (protein)
Unique Ligands	EDO

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1F0K \| pdb_00001f0k	Download File View File

THE 1.9 ANGSTROM CRYSTAL STRUCTURE OF E. COLI MURG

Ha, S., Walker, D., Shi, Y., Walker, S.

(2000) Protein Sci 9: 1045-1052

Released	2000-07-27
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Escherichia coli
Macromolecule	UDP-N-ACETYLGLUCOSAMINE-N-ACETYLMURAMYL-(PENTAPEPTIDE) PYROPHOSPHORYL-UNDECAPRENOL N-ACETYLGLUCOSAMINE TRANSFERASE (protein)
Unique Ligands	SO4

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1NLM \| pdb_00001nlm	Download File View File

CRYSTAL STRUCTURE OF MURG:GLCNAC COMPLEX

Hu, Y., Chen, L., Ha, S., Gross, B., Falcone, B., Walker, D., Mokhtarzadeh, M., Walker, S.

(2003) Proc Natl Acad Sci U S A 100: 845-849

Released	2003-02-11
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Escherichia coli
Macromolecule	UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase (protein)
Unique Ligands	GOL, UD1

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2IVZ \| pdb_00002ivz	Download File View File

Structure of TolB in complex with a peptide of the colicin E9 T- domain

Loftus, S.R., Walker, D., Mate, M.J., Bonsor, D.A., James, R., Moore, G.R., Kleanthous, C.

(2006) Proc Natl Acad Sci U S A 103: 12353

Released	2006-08-16
Method	X-RAY DIFFRACTION 2 Å
Organisms	Escherichia coli
Macromolecule	COLICIN-E9 (protein) PROTEIN TOLB (protein)
Unique Ligands	CA

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3IFL \| pdb_00003ifl	Download File View File

X-ray structure of amyloid beta peptide:antibody (Abeta1-7:12A11) complex

Weis, W.I., Feinberg, H., Basi, G.S., Schenk, D.

(2010) J Biological Chem 285: 3417-3427

Released	2009-11-17
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Homo sapiens Mus musculus
Macromolecule	12A11 FAB antibody heavy chain (protein) 12A11 FAB antibody light chain (protein) Amyloid beta A4 protein (protein)

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3IFN \| pdb_00003ifn	Download File View File

X-ray structure of amyloid beta peptide:antibody (Abeta1-40:12A11) complex

Weis, W.I., Feinberg, H., Basi, G.S., Schenk, D.

(2010) J Biological Chem 285: 3417-3427

Released	2009-11-17
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Homo sapiens Mus musculus
Macromolecule	12A11 FAB antibody heavy chain (protein) 12A11 FAB antibody light chain (protein) Amyloid beta A4 protein (protein)

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3IFO \| pdb_00003ifo	Download File View File

X-ray structure of amyloid beta peptide:antibody (Abeta1-7:10D5) complex

Weis, W.I., Feinberg, H., Basi, G.S., Schenk, D.

(2010) J Biological Chem 285: 3417-3427

Released	2009-11-17
Method	X-RAY DIFFRACTION 2.15 Å
Organisms	Homo sapiens Mus musculus
Macromolecule	10D5 FAB antibody heavy chain (protein) 10D5 FAB antibody light chain (protein) Amyloid beta A4 protein (protein)

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3IFP \| pdb_00003ifp	Download File View File

X-ray structure of amyloid beta peptide:antibody (Abeta1-7:12B4) complex

Weis, W.I., Feinberg, H., Basi, G.S., Schenk, D.

(2010) J Biological Chem 285: 3417-3427

Released	2009-11-17
Method	X-RAY DIFFRACTION 2.95 Å
Organisms	Homo sapiens Mus musculus
Macromolecule	12B4 FAB antibody heavy chain (protein) 12B4 FAB antibody light chain (protein) Amyloid beta A4 protein (protein)

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4FZL \| pdb_00004fzl	Download File View File

High resolution structure of truncated bacteriocin syringacin M from Pseudomonas syringae pv. tomato DC3000

Roszak, A.W., Grinter, R., Cogdell, J.R., Walker, D.

(2012) J Biological Chem 287: 38876-38888

Released	2012-10-03
Method	X-RAY DIFFRACTION 1.46 Å
Organisms	Pseudomonas syringae pv. tomato str. DC3000
Macromolecule	Bacteriocin (protein)
Unique Ligands	CA, CL, EDO, MG

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4FZM \| pdb_00004fzm	Download File View File

Crystal structure of the bacteriocin syringacin M from Pseudomonas syringae pv. tomato DC3000

Roszak, A.W., Grinter, R., Cogdell, J.R., Walker, D.

(2012) J Biological Chem 287: 38876-38888

Released	2012-10-03
Method	X-RAY DIFFRACTION 2.83 Å
Organisms	Pseudomonas syringae pv. tomato str. DC3000
Macromolecule	Bacteriocin (protein)
Unique Ligands	CA, EDO

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4FZN \| pdb_00004fzn	Download File View File

Crystal structure of syringacin M mutant D232A from Pseudomonas syringae pv. tomato DC3000

Roszak, A.W., Grinter, R., Cogdell, J.R., Walker, D.

(2012) J Biological Chem 287: 38876-38888

Released	2012-10-03
Method	X-RAY DIFFRACTION 3.12 Å
Organisms	Pseudomonas syringae pv. tomato str. DC3000
Macromolecule	Bacteriocin (protein)

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4I1F \| pdb_00004i1f	Download File View File

Structure of Parkin-S223P E3 ligase

Lougheed, J.C., Brecht, E., Yao, N.H.

(2013) Nat Commun 4: 1982-1982

Released	2013-06-19
Method	X-RAY DIFFRACTION 1.58 Å
Organisms	Homo sapiens
Macromolecule	E3 ubiquitin-protein ligase parkin (protein)
Unique Ligands	BA, ZN

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4I1H \| pdb_00004i1h	Download File View File

Structure of Parkin E3 ligase

Lougheed, J.C., Brecht, E., Yao, N.H.

(2013) Nat Commun 4: 1982-1982

Released	2013-06-19
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	E3 ubiquitin-protein ligase parkin (protein)
Unique Ligands	ZN

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4IWD \| pdb_00004iwd	Download File View File

Structure of dually phosphorylated c-MET receptor kinase in complex with an MK-8033 analog

Soisson, S.M., Northrup, A., Rickert, K., Patel, S., Allison, T.

(2013) J Med Chem 56: 2294-2310

Released	2013-12-11
Method	X-RAY DIFFRACTION 1.99 Å
Organisms	Homo sapiens
Macromolecule	Hepatocyte growth factor receptor (protein)
Unique Ligands	1JC

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4LE7 \| pdb_00004le7	Download File View File

The Crystal Structure of Pyocin L1 at 2.09 Angstroms

Grinter, R., Roszak, A.W., Mccaughey, L., Cogdell, R.J., Walker, D.

(2014) PLoS Pathog 10: e1003898-e1003898

Released	2014-02-19
Method	X-RAY DIFFRACTION 2.09 Å
Organisms	Pseudomonas aeruginosa str. C 1433
Macromolecule	Pyocin L1 (protein)
Unique Ligands	CL, EDO

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4LEA \| pdb_00004lea	Download File View File

The Crystal Structure of Pyocin L1 bound to D-mannose at 2.55 Angstroms

Grinter, R., Roszak, A.W., Mccaughey, L., Cogdell, C.J., Walker, D.

(2014) PLoS Pathog 10: e1003898-e1003898

Released	2014-02-19
Method	X-RAY DIFFRACTION 2.55 Å
Organisms	Pseudomonas aeruginosa str. C 1433
Macromolecule	Pyocin L1 (protein)
Unique Ligands	BMA

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4LED \| pdb_00004led	Download File View File

The Crystal Structure of Pyocin L1 bound to D-rhamnose at 2.37 Angstroms

Grinter, R., Roszak, A.W., Mccaughey, L., Cogdell, C.J., Walker, D.

(2014) PLoS Pathog 10: e1003898-e1003898

Released	2014-02-19
Method	X-RAY DIFFRACTION 2.37 Å
Organisms	Pseudomonas aeruginosa str. C 1433
Macromolecule	Pyocin L1 (protein)
Unique Ligands	XXR

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4N58 \| pdb_00004n58	Download File View File

Crystal Structure of Pectocin M2 at 1.86 Angstroms

Grinter, R., Roszak, A.W., Zeth, K., Cogdell, C.J., Walker, D.

(2014) Mol Microbiol 93: 234-246

Released	2014-06-04
Method	X-RAY DIFFRACTION 1.86 Å
Organisms	Pectobacterium brasiliense PBR1692
Macromolecule	Pectocin M2 (protein)
Unique Ligands	CL, FES, GOL, MPD, SO4

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4N59 \| pdb_00004n59	Download File View File

The Crystal Structure of Pectocin M2 at 2.3 Angstroms

Zeth, K., Grinter, R., Roszak, A.W., Cogdell, R.J., Walker, D.

(2014) Mol Microbiol 93: 234-246

Released	2014-06-04
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Pectobacterium brasiliense PBR1692
Macromolecule	Pectocin M2 (protein)
Unique Ligands	CL, FES, SO4

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4QAY \| pdb_00004qay	Download File View File

Crystal structure of TamA POTRA domains

Wojdyla, J.A., Mosbahi, K., Walker, D., Kleanthous, C.

To be published

Released	2015-11-18
Method	X-RAY DIFFRACTION 2.35 Å
Organisms	human gut metagenome
Macromolecule	Translocation and assembly module TamA (protein)
Unique Ligands	PO4

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4QKO \| pdb_00004qko	Download File View File

The Crystal Structure of the Pyocin S2 Nuclease Domain, Immunity Protein Complex at 1.8 Angstroms

Grinter, R., Josts, I., Roszak, A.W., Cogdell, C.J., Walker, D.

To be published

Released	2015-06-10
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Pseudomonas aeruginosa PAO1
Macromolecule	Pyocin-S2 (protein) Pyocin-S2 immunity protein (protein)
Unique Ligands	BR, MG

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4RTD \| pdb_00004rtd	Download File View File

Escherichia coli alpha-2-macroglobulin activated by porcine elastase

Fyfe, C.D., Grinter, R., Roszak, A.W., Josts, I., Cogdell, R.J., Walker, D.

(2015) Acta Crystallogr D Biol Crystallogr 71: 1478-1486

Released	2015-07-15
Method	X-RAY DIFFRACTION 3.65 Å
Organisms	Escherichia coli K-12
Macromolecule	Uncharacterized lipoprotein YfhM (protein)

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4UDM \| pdb_00004udm	Download File View File

Crystal structure of Im3 in complex with Y52A mutant of E3RNase

Sharma, A., Kleanthous, C.

(2015) J Am Chem Soc 137: 5252

Released	2016-01-13
Method	X-RAY DIFFRACTION 2.96 Å
Organisms	Escherichia coli BL21(DE3)
Macromolecule	COLICIN-E3 (protein) COLICIN-E3 IMMUNITY PROTEIN (protein)
Unique Ligands	CA, CL

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4UHP \| pdb_00004uhp	Download File View File

Crystal structure of the pyocin AP41 DNase-Immunity complex

Joshi, A., Chen, S., Wojdyla, J.A., Kaminska, R., Kleanthous, C.

(2015) J Mol Biology 427: 2852

Released	2015-08-05
Method	X-RAY DIFFRACTION 2 Å
Organisms	Pseudomonas aeruginosa PAO1
Macromolecule	BACTERIOCIN IMMUNITY PROTEIN (protein) LARGE COMPONENT OF PYOCIN AP41 (protein)

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4UHQ \| pdb_00004uhq	Download File View File

Crystal structure of the pyocin AP41 DNase

Joshi, A., Chen, S., Wojdyla, J.A., Kaminska, R., Kleanthous, C.

(2015) J Mol Biology 427: 2852

Released	2015-08-05
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Pseudomonas aeruginosa PAO1
Macromolecule	LARGE COMPONENT OF PYOCIN AP41 (protein)
Unique Ligands	CIT, NI

1 to 25 of 50 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1E44 | pdb_00001e44

1F0K | pdb_00001f0k

1NLM | pdb_00001nlm

2IVZ | pdb_00002ivz

3IFL | pdb_00003ifl

3IFN | pdb_00003ifn

3IFO | pdb_00003ifo

3IFP | pdb_00003ifp

4FZL | pdb_00004fzl

4FZM | pdb_00004fzm

4FZN | pdb_00004fzn

4I1F | pdb_00004i1f

4I1H | pdb_00004i1h

4IWD | pdb_00004iwd

4LE7 | pdb_00004le7

4LEA | pdb_00004lea

4LED | pdb_00004led

4N58 | pdb_00004n58

4N59 | pdb_00004n59

4QAY | pdb_00004qay

4QKO | pdb_00004qko

4RTD | pdb_00004rtd

4UDM | pdb_00004udm

4UHP | pdb_00004uhp

4UHQ | pdb_00004uhq