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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Wang, D."

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Search Summary

This query matches 668 Structures.

Refinements

Structure Determination Methodology

experimental (668)

Scientific Name of Source Organism

	Homo sapiens (213)
	synthetic construct (81)
	Saccharomyces cerevisiae S288C (46)
	Mus musculus (37)
	Saccharomyces cerevisiae (37)
	Escherichia coli (16)
	Severe acute respiratory syndrome coronavirus 2 (14)
	Bacillus subtilis (13)
	Salasvirus phi29 (13)
	Influenza A virus (11)

More...

Taxonomy

	Eukaryota (378)
	Bacteria (229)
	other sequences (83)
	Riboviria (51)
	Duplodnaviria (26)
	Archaea (20)
	Monodnaviria (12)
	Viruses incertae sedis (3)
	unclassified sequences (2)

Experimental Method

	X-RAY DIFFRACTION (496)
	ELECTRON MICROSCOPY (128)
	SOLUTION NMR (42)
	SOLID-STATE NMR (2)

Polymer Entity Type

	Protein (666)
	DNA (114)
	RNA (77)
	NA-hybrid (1)

Refinement Resolution (Å)

	1.0 - 1.5 (20)
	1.5 - 2.0 (135)
	2.0 - 2.5 (138)
	2.5 - 3.0 (127)
	3.0 - 3.5 (100)
	3.5 - 4.0 (74)
	4.0 - 4.5 (14)
	> 4.5 (16)

Release Date

	1985 - 1989 (1)
	2000 - 2004 (3)
	2005 - 2009 (127)
	2010 - 2014 (127)
	2015 - 2019 (180)
	2020 - 2024 (221)
	2025 - 2029 (9)

Enzyme Classification Name

	Transferases (146)
	Hydrolases (111)
	Oxidoreductases (24)
	Lyases (9)
	Isomerases (4)
	Translocases (5)

Membrane Protein Annotation

	PDBTM (72)
	MemProtMD (44)
	mpstruc (50)
	OPM (32)

Symmetry Type

	Asymmetric (421)
	Cyclic (223)
	Dihedral (34)
	Icosahedral (5)
	Helical (3)
	Tetrahedral (3)

SCOP Classification

	All beta proteins (67)
	Alpha and beta proteins (a+b) (84)
	Artifacts (41)
	All alpha proteins (37)
	Alpha and beta proteins (a/b) (37)
	Small proteins (18)
	Multi-domain proteins (alpha and beta) (12)
	Coiled coil proteins (10)
	Low resolution protein structures (1)
	Membrane and cell surface proteins and peptides (4)

AllSelected

1 to 25 of 668 Structures

Page 1 of 27

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1RTY \| pdb_00001rty	Download File View File

Crystal Structure of Bacillus subtilis YvqK, a putative ATP-binding Cobalamin Adenosyltransferase, The North East Structural Genomics Target SR128

Forouhar, F., Lee, I., Xiao, R., Acton, T.B., Montelione, G.T., Tong, L., Northeast Structural Genomics Consortium (NESG)

(2007) J Struct Funct Genomics 8: 37-44

Released	2003-12-23
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Bacillus subtilis
Macromolecule	yvqk protein (protein)
Unique Ligands	PO4

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1S9K \| pdb_00001s9k	Download File View File

Crystal Structure of Human NFAT1 and Fos-Jun on the IL-2 ARRE1 Site

Wang, D., Stroud, J.C., Chen, L.

To be published

Released	2005-06-14
Method	X-RAY DIFFRACTION 3.1 Å
Organisms	Homo sapiens
Macromolecule	Nuclear factor of activated T-cells, cytoplasmic 2 (protein) Proto-oncogene protein c-fos (protein) Transcription factor AP-1 (protein) Human IL-2 ARRE1 Promoter Element, Minus Strand (nucleic acid) Human IL-2 ARRE1 Promoter Element, Plus Strand (nucleic acid)

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1SQS \| pdb_00001sqs	Download File View File

X-Ray Crystal Structure Protein SP1951 of Streptococcus pneumoniae. Northeast Structural Genomics Consortium Target SpR27.

Forouhar, F., Lee, I., Vorobiev, S.M., Xiao, R., Acton, T.B., Montelione, G.T., Hunt, J.F., Tong, L., Northeast Structural Genomics Consortium (NESG)

(2007) J Struct Funct Genomics 8: 37-44

Released	2004-03-30
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Streptococcus pneumoniae TIGR4
Macromolecule	conserved hypothetical protein (protein)
Unique Ligands	TLA

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1TM0 \| pdb_00001tm0	Download File View File

Crystal Structure of the putative proline racemase from Brucella melitensis, Northeast Structural Genomics Target LR31

Forouhar, F., Chen, Y., Xiao, R., Ho, C.K., Ma, L.-C., Cooper, B., Acton, T.B., Montelione, G.T., Hunt, J.F., Tong, L., Northeast Structural Genomics Consortium (NESG)

(2007) J Struct Funct Genomics 8: 37-44

Released	2004-06-29
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Brucella melitensis bv. 1 str. 16M
Macromolecule	PROLINE RACEMASE (protein)

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1W24 \| pdb_00001w24	Download File View File

Crystal Structure Of human Vps29

Wang, D., Guo, M., Teng, M., Niu, L.

(2005) J Biological Chem 280: 22962

Released	2005-03-23
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens
Macromolecule	VACUOLAR PROTEIN SORTING PROTEIN 29 (protein)

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1ZBP \| pdb_00001zbp	Download File View File

X-Ray Crystal Structure of Protein VPA1032 from Vibrio parahaemolyticus. Northeast Structural Genomics Consortium Target VpR44

Forouhar, F., Yong, W., Vorobiev, S.M., Ciao, M., Acton, T.B., Montelione, G.T., Hunt, J.F., Tong, L., Northeast Structural Genomics Consortium (NESG)

(2007) J Struct Funct Genomics 8: 37-44

Released	2005-04-19
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Vibrio parahaemolyticus RIMD 2210633
Macromolecule	hypothetical protein VPA1032 (protein)

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2CGA \| pdb_00002cga	Download File View File

BOVINE CHYMOTRYPSINOGEN A. X-RAY CRYSTAL STRUCTURE ANALYSIS AND REFINEMENT OF A NEW CRYSTAL FORM AT 1.8 ANGSTROMS RESOLUTION

Wang, D., Bode, W., Huber, R.

(1985) J Mol Biology 185: 595-624

Released	1987-04-16
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Bos taurus
Macromolecule	CHYMOTRYPSINOGEN A (protein)

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2DSM \| pdb_00002dsm	Download File View File

NMR Structure of Bacillus Subtilis Protein YqaI, Northeast Structural Genomics Target SR450

Ramelot, T.A., Cort, J.R., Wang, D., Janua, H., Cunningham, K., Ma, L.C., Xiao, R., Liu, J., Baran, M., Swapna, G.V.T., Acton, T.B., Rost, B., Montelione, G.T., Kennedy, M.A., Northeast Structural Genomics Consortium (NESG)

To be published

Released	2006-08-26
Method	SOLUTION NMR
Organisms	Bacillus subtilis
Macromolecule	Hypothetical protein yqaI (protein)

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2E2H \| pdb_00002e2h	Download File View File

RNA polymerase II elongation complex at 5 mM Mg2+ with GTP

Wang, D., Bushnell, D.A., Westover, K.D., Kaplan, C.D., Kornberg, R.D.

(2006) Cell 127: 941-954

Released	2006-12-12
Method	X-RAY DIFFRACTION 3.95 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	Unique protein chains: 10 Unique nucleic acid chains: 3
Unique Ligands	GTP, MG, ZN

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2E2I \| pdb_00002e2i	Download File View File

RNA polymerase II elongation complex in 5 mM Mg+2 with 2'-dGTP

Wang, D., Bushnell, D.A., Westover, K.D., Kaplan, C.D., Kornberg, R.D.

(2006) Cell 127: 941-954

Released	2006-12-19
Method	X-RAY DIFFRACTION 3.41 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	Unique protein chains: 10 Unique nucleic acid chains: 3
Unique Ligands	DGT, MG, ZN

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2E2J \| pdb_00002e2j	Download File View File

RNA polymerase II elongation complex in 5 mM Mg+2 with GMPCPP

Wang, D., Bushnell, D.A., Westover, K.D., Kaplan, C.D., Kornberg, R.D.

(2006) Cell 127: 941-954

Released	2006-12-12
Method	X-RAY DIFFRACTION 3.5 Å
Organisms	Saccharomyces cerevisiae synthetic construct
Macromolecule	Unique protein chains: 10 Unique nucleic acid chains: 3
Unique Ligands	G2P, MG, ZN

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2GF4 \| pdb_00002gf4	Download File View File

Crystal structure of Vng1086c from Halobacterium salinarium (Halobacterium halobium). Northeast Structural Genomics Target HsR14

Benach, J., Zhou, W., Jayaraman, S., Forouhar, F.F., Janjua, H., Xiao, R., Ma, L.-C., Cunningham, K., Wang, D., Acton, T.B., Montelione, G.T., Tong, L., Hunt, J.F., Northeast Structural Genomics Consortium (NESG)

To be published

Released	2006-04-18
Method	X-RAY DIFFRACTION 2.07 Å
Organisms	Halobacterium salinarum NRC-1
Macromolecule	Protein Vng1086c (protein)
Unique Ligands	ACT, CA

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2GO8 \| pdb_00002go8	Download File View File

Crystal structure of YQJZ_BACSU FROM Bacillus subtilis. Northeast structural genomics TARGET SR435

Benach, J., Su, M., Jayaraman, S., Fang, Y., Xiao, R., Ma, L.-C., Cunningham, K., Wang, D., Acton, T.B., Montelione, G.T., Tong, L., Hunt, J.F., Northeast Structural Genomics Consortium (NESG)

To be published

Released	2006-04-25
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Bacillus subtilis
Macromolecule	Hypothetical protein yqjZ (protein)

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2GSV \| pdb_00002gsv	Download File View File

X-Ray Crystal Structure of Protein YvfG from Bacillus subtilis. Northeast Structural Genomics Consortium Target SR478.

Forouhar, F., Su, M., Jayaraman, S., Wang, D., Fang, Y., Cunningham, K., Conover, K., Ma, L.-C., Xiao, R., Acton, T.B., Montelione, G.T., Tong, L., Hunt, J.F., Northeast Structural Genomics Consortium (NESG)

To be published

Released	2006-05-09
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Bacillus subtilis
Macromolecule	Hypothetical protein yvfG (protein)
Unique Ligands	SO4

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2GTA \| pdb_00002gta	Download File View File

Crystal Structure of the putative pyrophosphatase YPJD from Bacillus subtilis. Northeast Structural Genomics Consortium Target SR428.

Vorobiev, S.M., Zhou, W., Seetharaman, J., Wang, D., Ma, L.C., Acton, T., Xio, R., Montelione, G.T., Tong, L., Hunt, J.F., Northeast Structural Genomics Consortium (NESG)

To be published

Released	2006-05-23
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Bacillus subtilis
Macromolecule	Hypothetical protein ypjD (protein)
Unique Ligands	NA

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2GZX \| pdb_00002gzx	Download File View File

Crystal Structure of the TatD deoxyribonuclease MW0446 from Staphylococcus aureus. Northeast Structural Genomics Consortium Target ZR237.

Vorobiev, S.M., Neely, H., Seetharaman, J., Wang, D., Fang, Y., Xiao, R., Acton, T., Montelione, G.T., Tong, L., Hunt, J.F., Northeast Structural Genomics Consortium (NESG)

To be published

Released	2006-07-11
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Staphylococcus aureus subsp. aureus MW2
Macromolecule	putative TatD related DNase (protein)
Unique Ligands	NI

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2HD3 \| pdb_00002hd3	Download File View File

Crystal Structure of the Ethanolamine Utilization Protein EutN from Escherichia coli, NESG Target ER316

Forouhar, F., Zhang, W., Jayaraman, S., Zhao, L., Jiang, M., Cunningham, K., Ma, L.-C., Xiao, R., Liu, J., Baran, M., Swapna, G.V.T., Acton, T.B., Rost, B., Montelione, G.T., Hunt, J.F., Tong, L., Northeast Structural Genomics Consortium (NESG)

(2007) J Struct Funct Genomics 8: 37-44

Released	2006-08-15
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Escherichia coli CFT073
Macromolecule	Ethanolamine utilization protein eutN (protein)

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2J1R \| pdb_00002j1r	Download File View File

Structure of a Streptococcus pneumoniae fucose binding module

Boraston, A.B., Wang, D., Burke, R.D.

(2006) J Biological Chem 281: 35263

Released	2006-09-06
Method	X-RAY DIFFRACTION 1.54 Å
Organisms	Streptococcus pneumoniae TIGR4
Macromolecule	FUCOLECTIN-RELATED PROTEIN (protein)
Unique Ligands	CA

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2J1S \| pdb_00002j1s	Download File View File

Structure of a Streptococcus pneumoniae fucose binding module in complex with fucose

Boraston, A.B., Wang, D., Burke, R.D.

(2006) J Biological Chem 281: 35263

Released	2006-09-06
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Streptococcus pneumoniae TIGR4
Macromolecule	FUCOLECTIN-RELATED PROTEIN (protein)
Unique Ligands	CA, FUL

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2J1T \| pdb_00002j1t	Download File View File

Structure of a Streptococcus pneumoniae fucose binding module in complex with the Lewis Y antigen

Boraston, A.B., Wang, D., Burke, R.D.

(2006) J Biological Chem 281: 35263

Released	2006-09-06
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Streptococcus pneumoniae TIGR4
Macromolecule	FUCOLECTIN-RELATED PROTEIN (protein)
Unique Ligands	CA
Unique branched monosaccharides	FUC, GAL, NAG

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2J1U \| pdb_00002j1u	Download File View File

Structure of a Streptococcus pneumoniae fucose binding module in complex with the blood group A-tetrasaccharide

Boraston, A.B., Wang, D., Burke, R.D.

(2006) J Biological Chem 281: 35263

Released	2006-09-06
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Streptococcus pneumoniae TIGR4
Macromolecule	FUCOLECTIN-RELATED PROTEIN (protein)
Unique Ligands	CA
Unique branched monosaccharides	A2G, BGC, FUC, GAL

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2J1V \| pdb_00002j1v	Download File View File

Structure of a Streptococcus pneumoniae fucose binding module in complex with the blood group H-trisaccharide

Boraston, A.B., Wang, D., Burke, R.D.

(2006) J Biological Chem 281: 35263

Released	2006-09-06
Method	X-RAY DIFFRACTION 1.45 Å
Organisms	Streptococcus pneumoniae TIGR4
Macromolecule	FUCOLECTIN-RELATED PROTEIN (protein)
Unique Ligands	CA
Unique branched monosaccharides	FUC, GAL, NAG

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2J22 \| pdb_00002j22	Download File View File

Structure of a Streptococcus pneumoniae fucose binding module, SpX-3

Boraston, A.B., Wang, D., Burke, R.D.

(2006) J Biological Chem 281: 35263

Released	2006-09-06
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Streptococcus pneumoniae TIGR4
Macromolecule	FUCOLECTIN-RELATED PROTEIN (protein)
Unique Ligands	CA, GOL

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2J43 \| pdb_00002j43	Download File View File

Alpha-glucan recognition by family 41 carbohydrate-binding modules from streptococcal virulence factors

Lammerts van Bueren, A., Higgins, M., Wang, D., Burke, R.D., Boraston, A.B.

(2007) Nat Struct Mol Biol 14: 76

Released	2006-12-11
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Streptococcus pyogenes
Macromolecule	SPYDX (protein)

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2J44 \| pdb_00002j44	Download File View File

Alpha-glucan binding by a streptococcal virulence factor

Lammerts van Bueren, A., Higgins, M., Wang, D., Burke, R.D., Boraston, A.B.

(2007) Nat Struct Mol Biol 14: 76

Released	2006-12-11
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Streptococcus pneumoniae
Macromolecule	ALKALINE AMYLOPULLULANASE (protein)
Unique Ligands	ZN
Unique branched monosaccharides	GLC

1 to 25 of 668 Structures

Page 1 of 27

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1RTY | pdb_00001rty

1S9K | pdb_00001s9k

1SQS | pdb_00001sqs

1TM0 | pdb_00001tm0

1W24 | pdb_00001w24

1ZBP | pdb_00001zbp

2CGA | pdb_00002cga

2DSM | pdb_00002dsm

2E2H | pdb_00002e2h

2E2I | pdb_00002e2i

2E2J | pdb_00002e2j

2GF4 | pdb_00002gf4

2GO8 | pdb_00002go8

2GSV | pdb_00002gsv

2GTA | pdb_00002gta

2GZX | pdb_00002gzx

2HD3 | pdb_00002hd3

2J1R | pdb_00002j1r

2J1S | pdb_00002j1s

2J1T | pdb_00002j1t

2J1U | pdb_00002j1u

2J1V | pdb_00002j1v

2J22 | pdb_00002j22

2J43 | pdb_00002j43

2J44 | pdb_00002j44