RCSB PDB: Search

Warning You are using a web browser that we do not support. Our website will not work properly. Please update to a newer version or download a new web browser, such as Chrome or Firefox.

Help

Help

RCSB PDB

Deposit
- PDBx/mmCIF file
- pdb_extract
- SF-Tool
- Ligand Expo
- MAXIT
- Validation Server
- Validation API
- Information for Journals
- Validation Task Forces
- wwPDB OneDep System
- PDB-IHM
Search
Visualize
Analyze
Download
Learn
- Training Courses
- Guide to PDB Data
- Molecule of the Month
- Educational Resources
- Curricula
- Browse
- News
- SciArt Galleries
- Irving Geis
- David Goodsell
About
Careers
COVID-19

233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

	Include CSM
Advanced Search \| Browse Annotations		Help

Search
Query History
Browse Annotations
MyPDB

QUERY: Citation Author = "Wilson, G.G."

MyPDB Login

Search API

Advanced Search Query Builder

Help

Full Text

Structure Attributes

Help

NOT

Count

Add Subquery

Chemical Attributes

Sequence Similarity

Sequence Motif

Structure Similarity

Structure Motif

Chemical Similarity

Return

grouped by

Include Computed Structure Models (CSM)

Count

Clear

Search Summary

This query matches 46 Structures.

Refinements

Structure Determination Methodology

experimental (46)

Scientific Name of Source Organism

	Homo sapiens (18)
	synthetic construct (18)
	Haemophilus influenzae (5)
	Haemophilus parahaemolyticus (5)
	Brevibacillus brevis (4)
	Acinetobacter baumannii SDF (3)
	Staphylococcus warneri (3)
	Aquipseudomonas alcaligenes (2)
	Tequatrovirus (2)
	Azoarcus olearius (1)

More...

Taxonomy

	Bacteria (27)
	Eukaryota (19)
	other sequences (18)
	Duplodnaviria (2)
	unclassified sequences (1)

Experimental Method

X-RAY DIFFRACTION (46)

Polymer Entity Type

	Protein (46)
	DNA (38)

Refinement Resolution (Å)

	1.0 - 1.5 (4)
	1.5 - 2.0 (16)
	2.0 - 2.5 (12)
	2.5 - 3.0 (8)
	3.0 - 3.5 (5)
	3.5 - 4.0 (1)

Release Date

	1995 - 1999 (1)
	2000 - 2004 (1)
	2005 - 2009 (5)
	2010 - 2014 (15)
	2015 - 2019 (24)

Enzyme Classification Name

	Transferases (4)
	Hydrolases (12)

Symmetry Type

	Asymmetric (31)
	Cyclic (16)

SCOP Classification

Alpha and beta proteins (a/b) (2)

AllSelected

1 to 25 of 46 Structures

Page 1 of 2

Sort by

Explore in 3D

1DC1 \| pdb_00001dc1	Download File View File

RESTRICTION ENZYME BSOBI/DNA COMPLEX STRUCTURE: ENCIRCLEMENT OF THE DNA AND HISTIDINE-CATALYZED HYDROLYSIS WITHIN A CANONICAL RESTRICTION ENZYME FOLD

van der Woerd, M.J., Pelletier, J.J., Xu, S.-Y., Friedman, A.M.

(2001) Structure 9: 133-144

Released	2001-02-21
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Geobacillus stearothermophilus
Macromolecule	BSOBI RESTRICTION ENDONUCLEASE (protein) DNA (5'-D(TAPTPAPCPTPCPGPAPGPTPAP*T)-3') (nucleic acid)
Unique Ligands	DIO

Explore in 3D

1DMU \| pdb_00001dmu	Download File View File

Crystal structure of the restriction endonuclease BglI (e.c.3.1.21.4) bound to its dna recognition sequence

Newman, M., Lunnen, K., Wilson, G., Greci, J., Schildkraut, I., Phillips, S.E.V.

(1998) EMBO J 17: 5466-5476

Released	1999-12-18
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Bacillus subtilis
Macromolecule	BGLI RESTRICTION ENDONUCLEASE (protein) DNA (5'-D(APTPCPGPCPCPTPAPAPTPAPGPGPCPGPAP*T)-3') (nucleic acid)
Unique Ligands	BME, CA

Explore in 3D

1YNM \| pdb_00001ynm	Download File View File

Crystal structure of restriction endonuclease HinP1I

Yang, Z., Horton, J.R., Maunus, R., Wilson, G.G., Roberts, R.J., Cheng, X.

(2005) Nucleic Acids Res 33: 1892-1901

Released	2005-05-03
Method	X-RAY DIFFRACTION 2.65 Å
Organisms	Haemophilus influenzae
Macromolecule	R.HinP1I restriction endonuclease (protein)

Explore in 3D

2FKC \| pdb_00002fkc	Download File View File

Crystal Form I of Pre-Reactive Complex of Restriction Endonuclease HinP1I with Cognate DNA and Calcium Ion

Horton, J.R.

(2006) Nucleic Acids Res 34: 939-948

Released	2006-02-21
Method	X-RAY DIFFRACTION 2.39 Å
Organisms	Haemophilus influenzae
Macromolecule	R.HinP1I restriction endonuclease (protein) 5'-D(CPCPAPGPCPGPCPTPGPG)-3' (nucleic acid)
Unique Ligands	CA

Explore in 3D

2FKH \| pdb_00002fkh	Download File View File

Crystal Form II of Pre-Reactive Complex of Restriction Endonuclease HinP1I with Cognate DNA and Calcium Ions

Horton, J.R.

(2006) Nucleic Acids Res 34: 939-948

Released	2006-02-21
Method	X-RAY DIFFRACTION 3.09 Å
Organisms	Haemophilus influenzae
Macromolecule	R.HinP1I Restriction Endonuclease (protein) 5'-D(CPCPAPGPCPGPCPTPGPG)-3' (nucleic acid)
Unique Ligands	CA

Explore in 3D

2FL3 \| pdb_00002fl3	Download File View File

Binary Complex of Restriction Endonuclease HinP1I with Cognate DNA

Horton, J.R.

(2006) Nucleic Acids Res 34: 939-948

Released	2006-02-21
Method	X-RAY DIFFRACTION 2.39 Å
Organisms	Haemophilus influenzae
Macromolecule	R.HinP1I Restriction Endonuclease (protein) 5'-D(CPCPAPGPCPGPCPTPGPG)-3' (nucleic acid)

Explore in 3D

2FLC \| pdb_00002flc	Download File View File

Post-Reactive Complex of Restriction Endonuclease HinP1I with Nicked Cognate DNA and Magnesium Ions

Horton, J.R.

(2006) Nucleic Acids Res 34: 939-948

Released	2006-02-21
Method	X-RAY DIFFRACTION 2.59 Å
Organisms	Haemophilus influenzae
Macromolecule	R.HinP1I Restriction Endonuclease (protein) 5'-D(CPCPAPG)-3' (nucleic acid) 5'-D(CPCPAPGPCPGPCPTPGPG)-3' (nucleic acid) 5'-D(PCPGPCPTPGPG)-3' (nucleic acid)
Unique Ligands	CL, MG

Explore in 3D

3LDY \| pdb_00003ldy	Download File View File

An extraordinary mechanism of DNA perturbation exhibited by the rare-cutting HNH restriction endonuclease PacI

Shen, B.W., Heiter, D., Chan, S.-H., Xu, S.-Y., Wilson, G., Stoddard, B.L.

(2010) Structure 18: 734-743

Released	2010-04-21
Method	X-RAY DIFFRACTION 1.97 Å
Organisms	Aquipseudomonas alcaligenes
Macromolecule	restriction endonuclease PacI (protein) DNA (5'-D(GPAPGPGPCPTPTPA)-3') (nucleic acid) DNA (5'-D(PAPTPTPAPAPGPCPCPTPC)-3') (nucleic acid)
Unique Ligands	CA, ZN

Explore in 3D

3M7K \| pdb_00003m7k	Download File View File

Crystal structure of PacI-DNA Enzyme product complex

Shen, B.W., Stoddard, B.L.

(2010) Structure 18: 734-743

Released	2010-04-21
Method	X-RAY DIFFRACTION 1.92 Å
Organisms	Aquipseudomonas alcaligenes
Macromolecule	restriction endonuclease PacI (protein) DNA (5'-D(GPAPGPGPCPTPTPAPAPT)-3') (nucleic acid) DNA (5'-D(PTPAPAPGPCPCPTPC)-3') (nucleic acid)
Unique Ligands	EDO, MG, NA, PT, SO4, ZN

Explore in 3D

4OC8 \| pdb_00004oc8	Download File View File

DNA modification-dependent restriction endonuclease AspBHI

Horton, J.R.

(2014) Sci Rep 4: 4246-4246

Released	2014-03-19
Method	X-RAY DIFFRACTION 2.884 Å
Organisms	Azoarcus olearius
Macromolecule	restriction endonuclease AspBHI (protein)
Unique Ligands	PO4

Explore in 3D

4PAR \| pdb_00004par	Download File View File

The 5-Hydroxymethylcytosine-Specific Restriction Enzyme AbaSI in a Complex with Product-like DNA

Horton, J.R., Cheng, X.

(2014) Nucleic Acids Res 42: 7947-7959

Released	2014-06-25
Method	X-RAY DIFFRACTION 2.89 Å
Organisms	Acinetobacter baumannii SDF Tequatrovirus
Macromolecule	Uncharacterized protein AbaSI (protein) DNA 14-MER (nucleic acid) DNA 18-MER (nucleic acid)
Unique Ligands	EDO

Explore in 3D

4PBA \| pdb_00004pba	Download File View File

The 5-Hydroxymethylcytosine-Specific Restriction Enzyme AbaSI in a Complex with Substrate-like DNA

Horton, J.R., Cheng, X.

(2014) Nucleic Acids Res 42: 7947-7959

Released	2014-06-25
Method	X-RAY DIFFRACTION 3.301 Å
Organisms	Acinetobacter baumannii SDF Tequatrovirus
Macromolecule	Uncharacterized protein AbaSI (protein) DNA (32-MER) (nucleic acid)

Explore in 3D

4PBB \| pdb_00004pbb	Download File View File

The 5-Hydroxymethylcytosine-Specific Restriction Enzyme AbaSI

Horton, J.R., Cheng, X.

(2014) Nucleic Acids Res 42: 7947-7959

Released	2014-06-25
Method	X-RAY DIFFRACTION 3.46 Å
Organisms	Acinetobacter baumannii SDF
Macromolecule	Uncharacterized protein AbaSI (protein)
Unique Ligands	SO4

Explore in 3D

4R28 \| pdb_00004r28	Download File View File

MspJI Restriction Endonuclease in Complex with 27-mer Oligonucleotide

Horton, J.R., Cheng, X.

(2014) Nucleic Acids Res 42: 12092-12101

Released	2014-10-08
Method	X-RAY DIFFRACTION 3.055 Å
Organisms	Mycobacterium sp. JLS synthetic construct
Macromolecule	Restriction endonuclease (protein) DNA (25-MER) (nucleic acid) DNA (26-MER) (nucleic acid)

Explore in 3D

4R2A \| pdb_00004r2a	Download File View File

Egr1/Zif268 zinc fingers in complex with methylated DNA

Hashimoto, H., Olanrewaju, Y.O., Zheng, Y., Wilson, G.G., Zhang, X., Cheng, X.

(2014) Genes Dev 28: 2304-2313

Released	2014-10-08
Method	X-RAY DIFFRACTION 1.591 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	Early growth response protein 1 (protein) DNA (5'-D(APGPCPGPTPGPGPGP(5CM)PGPT)-3') (nucleic acid) DNA (5'-D(TPAP(5CM)PGPCPCPCPAPCPGPC)-3') (nucleic acid)
Unique Ligands	EDO, ZN

Explore in 3D

4R2C \| pdb_00004r2c	Download File View File

Egr1/Zif268 zinc fingers in complex with hydroxymethylated DNA

Hashimoto, H., Olanrewaju, Y.O., Zheng, Y., Wilson, G.G., Zhang, X., Cheng, X.

(2014) Genes Dev 28: 2304-2313

Released	2014-10-08
Method	X-RAY DIFFRACTION 1.89 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	Early growth response protein 1 (protein) DNA (5'-D(APGPCPGPTPGPGPGP(5HC)PGPT)-3') (nucleic acid) DNA (5'-D(TPAP(5HC)PGPCPCPCPAPCPGPC)-3') (nucleic acid)
Unique Ligands	K, ZN

Explore in 3D

4R2D \| pdb_00004r2d	Download File View File

Egr1/Zif268 zinc fingers in complex with formylated DNA

Hashimoto, H., Olanrewaju, Y.O., Zheng, Y., Wilson, G.G., Zhang, X., Cheng, X.

(2014) Genes Dev 28: 2304-2313

Released	2014-10-08
Method	X-RAY DIFFRACTION 2.088 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	Early growth response protein 1 (protein) DNA (5'-D(APGPCPGPTPGPGPGP(5FC)PGPT)-3') (nucleic acid) DNA (5'-D(TPAP(5FC)PGPCPCPCPAPCPGPC)-3') (nucleic acid)
Unique Ligands	ZN

Explore in 3D

4R2E \| pdb_00004r2e	Download File View File

Wilms Tumor Protein (WT1) zinc fingers in complex with methylated DNA

Hashimoto, H., Olanrewaju, Y.O., Zheng, Y., Wilson, G.G., Zhang, X., Cheng, X.

(2014) Genes Dev 28: 2304-2313

Released	2014-10-08
Method	X-RAY DIFFRACTION 1.84 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	Wilms tumor protein, isoform 4/CRA_a (protein) DNA (5'-D(APGPCPGPTPGPGPGP(5CM)PGPT)-3') (nucleic acid) DNA (5'-D(TPAP(5CM)PGPCPCPCPAPCPGPC)-3') (nucleic acid)
Unique Ligands	ZN

Explore in 3D

4R2P \| pdb_00004r2p	Download File View File

Wilms Tumor Protein (WT1) zinc fingers in complex with hydroxymethylated DNA

Hashimoto, H., Olanrewaju, Y.O., Zheng, Y., Wilson, G.G., Zhang, X., Cheng, X.

(2014) Genes Dev 28: 2304-2313

Released	2014-10-08
Method	X-RAY DIFFRACTION 1.788 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	Wilms tumor protein, isoform 4/CRA_a (protein) DNA (5'-D(APGPCPGPTPGPGPGP(5HC)PGPT)-3') (nucleic acid) DNA (5'-D(TPAP(5HC)PGPCPCPCPAPCPGPC)-3') (nucleic acid)
Unique Ligands	EDO, ZN

Explore in 3D

4R2Q \| pdb_00004r2q	Download File View File

Wilms Tumor Protein (WT1) zinc fingers in complex with formylated DNA

Hashimoto, H., Olanrewaju, Y.O., Zheng, Y., Wilson, G.G., Zhang, X., Cheng, X.

(2014) Genes Dev 28: 2304-2313

Released	2014-10-08
Method	X-RAY DIFFRACTION 1.54 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	Wilms tumor protein, isoform 4/CRA_a (protein) DNA (5'-D(APGPCPGPTPGPGPGP(5FC)PGPT)-3') (nucleic acid) DNA (5'-D(TPAP(5FC)PGPCPCPCPAPCPGPC)-3') (nucleic acid)
Unique Ligands	EDO, ZN

Explore in 3D

4R2R \| pdb_00004r2r	Download File View File

Wilms Tumor Protein (WT1) zinc fingers in complex with carboxylated DNA

Hashimoto, H., Olanrewaju, Y.O., Zheng, Y., Wilson, G.G., Zhang, X., Cheng, X.

(2014) Genes Dev 28: 2304-2313

Released	2014-10-08
Method	X-RAY DIFFRACTION 2.089 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	Wilms tumor protein, isoform 4/CRA_a (protein) DNA (5'-D(APGPCPGPTPGPGPGP(1CC)PGPT)-3') (nucleic acid) DNA (5'-D(TPAP(5CM)PGPCPCPCPAPCPGPC)-3') (nucleic acid)
Unique Ligands	EDO, ZN

Explore in 3D

4R2S \| pdb_00004r2s	Download File View File

Wilms Tumor Protein (WT1) Q369P zinc fingers in complex with methylated DNA

Hashimoto, H., Olanrewaju, Y.O., Zheng, Y., Wilson, G.G., Zhang, X., Cheng, X.

(2014) Genes Dev 28: 2304-2313

Released	2014-10-08
Method	X-RAY DIFFRACTION 2.489 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	Wilms tumor protein, isoform 4/CRA_a (protein) DNA (5'-D(APGPCPGPTPGPGPGP(5CM)PGPT)-3') (nucleic acid) DNA (5'-D(TPAP(5CM)PGPCPCPCPAPCPGPC)-3') (nucleic acid)
Unique Ligands	EDO, ZN

Explore in 3D

4X9J \| pdb_00004x9j	Download File View File

EGR-1 with Doubly Methylated DNA

White, M.A., Zandarashvili, L., Iwahara, J.

(2015) FEBS Lett 589: 1748-1753

Released	2015-05-13
Method	X-RAY DIFFRACTION 1.412 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	Early growth response protein 1 (protein) DNA (5'-D(APGP(5CM)PGPTPGPGPGP(5CM)PGPT)-3') (nucleic acid) DNA (5'-D(TPAP(5CM)PGPCPCPCPAP(5CM)PGPC)-3') (nucleic acid)
Unique Ligands	ZN

Explore in 3D

4XIC \| pdb_00004xic	Download File View File

ANTPHD WITH 15BP di-thioate modified DNA DUPLEX

White, M.A., Zandarashvili, L., Iwahara, J.

(2015) Biophys J 109: 1026-1037

Released	2015-11-25
Method	X-RAY DIFFRACTION 2.69 Å
Organisms	Drosophila melanogaster unidentified
Macromolecule	Homeotic protein antennapedia (protein) DNA (5'-D(APGPAPAPAPGPCP(C2S)PAPTPTPAPGPAPG)-3') (nucleic acid) DNA (5'-D(TPCPTPCPTPAPAPTPGPGPCPTPTPTPC)-3') (nucleic acid)
Unique Ligands	MPD, NI

Explore in 3D

5EGB \| pdb_00005egb	Download File View File

Human PRDM9 allele-A ZnF Domain with Associated Recombination Hotspot DNA Sequence II

Patel, A., Horton, J.R., Wilson, G.G., Zhang, X., Cheng, X.

(2016) Genes Dev 30: 257-265

Released	2016-02-17
Method	X-RAY DIFFRACTION 1.977 Å
Organisms	Homo sapiens
Macromolecule	Histone-lysine N-methyltransferase PRDM9 (protein) DNA (5'-D(APCPCPAPCPGPTPGPGPCPTPAPGPGPGPAPGPGPCPCPT)-3') (nucleic acid) DNA (5'-D(TPAPGPGPCPCPTPCPCPCPTPAPGPCPCPAPCPGPTPGPG)-3') (nucleic acid)
Unique Ligands	ZN

1 to 25 of 46 Structures

Page 1 of 2

Sort by

About
About Us
Citing Us
Publications
Team
Careers
Usage & Privacy

Support
Contact Us
Help
Website FAQ
Glossary
Service Status

RCSB PDB is hosted by

RCSB PDB is a member of the

RCSB Partners
Nucleic Acid Knowledgebase

wwPDB Partners
RCSB PDB
PDBe
PDBj
BMRB
EMDB

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

Prepare Data

Validate Data

Deposit Data

Help and Resources

Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

1DC1 | pdb_00001dc1

1DMU | pdb_00001dmu

1YNM | pdb_00001ynm

2FKC | pdb_00002fkc

2FKH | pdb_00002fkh

2FL3 | pdb_00002fl3

2FLC | pdb_00002flc

3LDY | pdb_00003ldy

3M7K | pdb_00003m7k

4OC8 | pdb_00004oc8

4PAR | pdb_00004par

4PBA | pdb_00004pba

4PBB | pdb_00004pbb

4R28 | pdb_00004r28

4R2A | pdb_00004r2a

4R2C | pdb_00004r2c

4R2D | pdb_00004r2d

4R2E | pdb_00004r2e

4R2P | pdb_00004r2p

4R2Q | pdb_00004r2q

4R2R | pdb_00004r2r

4R2S | pdb_00004r2s

4X9J | pdb_00004x9j

4XIC | pdb_00004xic

5EGB | pdb_00005egb