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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Worley, P.F."

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Search Summary

This query matches 22 Structures.

Refinements

Structure Determination Methodology

experimental (22)

Scientific Name of Source Organism

	Homo sapiens (8)
	Lactococcus lactis (4)
	Saccharomyces cerevisiae (3)
	synthetic construct (3)
	Arabidopsis thaliana (2)
	Staphylococcus aureus (2)
	Thioalkalivibrio sulfidiphilus HL-EbGr7 (2)
	Xenopus laevis (2)
	Nocardiopsis dassonvillei (1)
	Petromyzon marinus (1)

More...

Taxonomy

	Eukaryota (13)
	Bacteria (9)
	other sequences (3)

Experimental Method

	X-RAY DIFFRACTION (15)
	ELECTRON MICROSCOPY (6)
	SOLUTION NMR (1)

Polymer Entity Type

	Protein (22)
	DNA (2)
	RNA (1)

Refinement Resolution (Å)

	1.0 - 1.5 (1)
	1.5 - 2.0 (3)
	2.0 - 2.5 (6)
	2.5 - 3.0 (4)
	3.0 - 3.5 (2)
	3.5 - 4.0 (1)
	4.0 - 4.5 (1)
	> 4.5 (3)

Release Date

	2005 - 2009 (8)
	2010 - 2014 (1)
	2015 - 2019 (9)
	2020 - 2024 (3)
	2025 - 2029 (1)

Enzyme Classification Name

	Transferases (8)
	Hydrolases (3)
	Oxidoreductases (4)
	Ligases (2)

Symmetry Type

	Cyclic (11)
	Asymmetric (10)
	Dihedral (1)
	Helical (1)

SCOP Classification

	All alpha proteins (6)
	Alpha and beta proteins (a/b) (6)
	Alpha and beta proteins (a+b) (3)
	Artifacts (2)

AllSelected

1 to 22 of 22 Structures

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2C7Y \| pdb_00002c7y	Download File View File

plant enzyme

Sundaramoorthy, R., Micossi, E., Alphey, M.S., Germain, V., Bryce, J.H., Smith, S.M., Leonard, G.A., Hunter, W.N.

(2006) J Mol Biology 359: 347

Released	2006-05-18
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Arabidopsis thaliana
Macromolecule	3-KETOACYL-COA THIOLASE 2 (protein)

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2C7Z \| pdb_00002c7z	Download File View File

Plant enzyme crystal form II

Sundaramoorthy, R., Micossi, E., Alphey, M.S., Leonard, G.A., Hunter, W.N.

(2006) J Mol Biology 359: 347

Released	2006-05-17
Method	X-RAY DIFFRACTION 2.37 Å
Organisms	Arabidopsis thaliana
Macromolecule	3-KETOACYL-COA THIOLASE 2 (protein)

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2IYO \| pdb_00002iyo	Download File View File

Structural characterization of a bacterial 6PDH reveals aspects of specificity, mechanism and mode of inhibition

Sundaramoorthy, R., Iulek, J., Hunter, W.N.

(2007) FEBS J 274: 275

Released	2007-01-23
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Lactococcus lactis
Macromolecule	6-PHOSPHOGLUCONATE DEHYDROGENASE, DECARBOXYLATING (protein)
Unique Ligands	6PG, CAC

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2IYP \| pdb_00002iyp	Download File View File

product rup

Sundaramoorthy, R., Iulek, J., Hunter, W.N.

(2007) FEBS J 274: 275

Released	2007-01-23
Method	X-RAY DIFFRACTION 2.79 Å
Organisms	Lactococcus lactis
Macromolecule	6-PHOSPHOGLUCONATE DEHYDROGENASE, DECARBOXYLATING (protein)
Unique Ligands	5RP, A2P, NAP

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2IZ0 \| pdb_00002iz0	Download File View File

PEX inhibitor-home data

Sundaramoorthy, R., Iulek, J., Hunter, W.N.

(2007) FEBS J 274: 275

Released	2007-01-23
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Lactococcus lactis
Macromolecule	6-PHOSPHOGLUCONATE DEHYDROGENASE, DECARBOXYLATING (protein)
Unique Ligands	ATR, CL, EDO, GOL, NAP, P33, PEG, RES

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2IZ1 \| pdb_00002iz1	Download File View File

6PDH complexed with PEX inhibitor synchrotron data

Sundaramoorthy, R., Iulek, J., Hunter, W.N.

(2007) FEBS J 274: 275

Released	2007-01-23
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Lactococcus lactis
Macromolecule	6-PHOSPHOGLUCONATE DEHYDROGENASE, DECARBOXYLATING (protein)
Unique Ligands	ATR, CL, P33, PEG, RES

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2VRZ \| pdb_00002vrz	Download File View File

Structural analysis of homodimeric staphylococcal aureus EsxA

Sundaramoorthy, R., Hunter, W.N.

(2008) J Mol Biology 383: 603

Released	2008-08-26
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Staphylococcus aureus
Macromolecule	VIRULENCE FACTOR ESXA (protein)
Unique Ligands	ZN

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2VS0 \| pdb_00002vs0	Download File View File

Structural analysis of homodimeric staphylococcal aureus virulence factor EsxA

Sundaramoorthy, R., Fyfe, P.K., Hunter, W.N.

(2008) J Mol Biology 383: 603

Released	2008-08-26
Method	X-RAY DIFFRACTION 1.4 Å
Organisms	Staphylococcus aureus
Macromolecule	VIRULENCE FACTOR ESXA (protein)
Unique Ligands	CAC, ZN

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2XB0 \| pdb_00002xb0	Download File View File

DNA-binding domain from Saccharomyces cerevisiae chromatin- remodelling protein Chd1

Ryan, D.P., Sundaramoorthy, R., Owen-Hughes, T.

(2011) EMBO J 30: 2596

Released	2011-05-11
Method	X-RAY DIFFRACTION 2 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	CHROMO DOMAIN-CONTAINING PROTEIN 1 (protein)
Unique Ligands	CL, GOL

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5AGC \| pdb_00005agc	Download File View File

Crystallographic forms of the Vps75 tetramer

Hammond, C.M., Sundaramoorthy, R., Owen-Hughes, T.

(2016) Nucleic Acids Res 44: 6157

Released	2016-03-02
Method	X-RAY DIFFRACTION 4 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 75 (protein)

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5C1Z \| pdb_00005c1z	Download File View File

Parkin (UblR0RBR)

kumar, A., Aguirre, J.D., Condos, T.E.C., Martinez-Torres, R.J., Chaugule, V.K., Toth, R., Sundaramoorthy, R., Mercier, P., Knebel, A., Spratt, D.E., Barber, K.R., Shaw, G.S., Walden, H.

(2015) EMBO J 34: 2506-2521

Released	2015-07-29
Method	X-RAY DIFFRACTION 1.79 Å
Organisms	Homo sapiens
Macromolecule	E3 ubiquitin-protein ligase parkin (protein)
Unique Ligands	CL, GOL, SO4, ZN

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5C23 \| pdb_00005c23	Download File View File

Parkin (S65DUblR0RBR)

Kumar, A., Aguirre, J.D., Condos, T.E.C., Martinez-Torres, R.J., Chaugule, V.K., Toth, R., Sundaramoorthy, R., Mercier, P., Knebel, A., Spratt, D.E., Barber, K.R., Shaw, G.S., Walden, H.

(2015) EMBO J 34: 2506-2521

Released	2015-07-29
Method	X-RAY DIFFRACTION 2.37 Å
Organisms	Homo sapiens
Macromolecule	E3 ubiquitin-protein ligase parkin (protein)
Unique Ligands	CL, GOL, SO4, ZN

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5N2W \| pdb_00005n2w	Download File View File

WT-Parkin and pUB complex

Kumar, A., Chaugule, V.K., Johnson, C., Toth, R., Sundaramoorthy, R., Knebel, A., Walden, H.

(2017) Nat Struct Mol Biol 24: 475-483

Released	2017-04-19
Method	X-RAY DIFFRACTION 2.68 Å
Organisms	Homo sapiens
Macromolecule	E3 ubiquitin-protein ligase parkin,E3 ubiquitin-protein ligase parkin (protein) Polyubiquitin-B (protein)
Unique Ligands	CL, TMO, ZN

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5N38 \| pdb_00005n38	Download File View File

S65DParkin and pUB complex

Kumar, A., Chaugule, V.K., Johnson, C., Toth, R., Sundaramoorthy, R., Knebel, A., Walden, H.

(2017) Nat Struct Mol Biol 24: 475-483

Released	2017-04-19
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Homo sapiens
Macromolecule	E3 ubiquitin-protein ligase parkin,E3 ubiquitin-protein ligase parkin (protein) Polyubiquitin-B (protein)
Unique Ligands	CL, PEG, ZN

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5O6C \| pdb_00005o6c	Download File View File

Crystal Structure of a threonine-selective RCR E3 ligase

Pao, K.-C., Rafie, K.Z., van Aalten, D., Virdee, S.

(2018) Nature 556: 381-385

Released	2018-04-18
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Homo sapiens
Macromolecule	E3 ubiquitin-protein ligase MYCBP2 (protein)
Unique Ligands	ZN

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6FTX \| pdb_00006ftx	Download File View File

Structure of the chromatin remodelling enzyme Chd1 bound to a ubiquitinylated nucleosome

Sundaramoorthy, R., Owen-hughes, T., Norman, D.G., Hughes, A.

(2018) Elife 7:

Released	2018-08-08
Method	ELECTRON MICROSCOPY 4.5 Å
Organisms	Homo sapiens Petromyzon marinus Saccharomyces cerevisiae Xenopus laevis Xenopus tropicalis synthetic construct
Macromolecule	Unique protein chains: 7 Unique nucleic acid chains: 2
Unique Ligands	ADP, BEF

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6G0L \| pdb_00006g0l	Download File View File

Structure of two molecules of the chromatin remodelling enzyme Chd1 bound to a nucleosome

Sundaramoorthy, R., Owen-hughes, T., Norman, D.G., Hughes, A.

(2018) Elife 7:

Released	2018-08-22
Method	ELECTRON MICROSCOPY 10 Å
Organisms	Saccharomyces cerevisiae S288C Xenopus laevis synthetic construct
Macromolecule	Unique protein chains: 6 Unique nucleic acid chains: 2
Unique Ligands	ADP, BEF

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6N13 \| pdb_00006n13	Download File View File

UbcH7-Ub Complex with R0RBR Parkin and phosphoubiquitin

Condos, T.E.C., Dunkerley, K.M., Freeman, E.A., Barber, K.R., Aguirre, J.D., Chaugule, V.K., Xiao, Y., Konermann, L., Walden, H., Shaw, G.S.

(2018) EMBO J 37:

Released	2018-11-28
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	E3 ubiquitin-protein ligase parkin (protein) Ubiquitin-conjugating enzyme E2 L3 (protein) phosphoubiquitin (protein) ubiquitin (protein)
Unique Ligands	ZN

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8ANE \| pdb_00008ane	Download File View File

Structure of the type I-G CRISPR effector

Shangguan, Q., Graham, S., Sundaramoorthy, R., White, M.F.

(2022) Nucleic Acids Res 50: 11214-11228

Released	2022-11-09
Method	ELECTRON MICROSCOPY 3.2 Å
Organisms	Thioalkalivibrio sulfidiphilus HL-EbGr7 synthetic construct
Macromolecule	Cas7 (protein) RNA (66-MER) (nucleic acid)

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8B2X \| pdb_00008b2x	Download File View File

Structure of the type I-G CRISPR effector

Shangguan, Q., Graham, S., Sundaramoorthy, R., White, M.F.

(2022) Nucleic Acids Res 50: 11214-11228

Released	2022-11-09
Method	ELECTRON MICROSCOPY 8 Å
Organisms	Thioalkalivibrio sulfidiphilus HL-EbGr7
Macromolecule	Type I-G CRISPR Cascade large subunit CSX17 (protein)

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8OV6 \| pdb_00008ov6	Download File View File

Ternary structure of intramolecular bivalent glue degrader IBG1 bound to BRD4 and DCAF16:DDB1deltaBPB

Cowan, A.D., Sundaramoorthy, R., Nakasone, M.A., Ciulli, A.

(2024) Nature 627: 204-211

Released	2023-05-17
Method	ELECTRON MICROSCOPY 3.77 Å
Organisms	Homo sapiens
Macromolecule	Bromodomain-containing protein 4 (protein) DDB1- and CUL4-associated factor 16 (protein) DDB1deltaBPB (protein)
Unique Ligands	U79, ZN

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9EXV \| pdb_00009exv	Download File View File

Broad substrate scope C-C oxidation in cyclodipeptides catalysed by a flavin-dependent filament

Sutherland, E., Sundaramoorthy, R., Czekster, C.M.

(2025) Nat Commun 16: 995-995

Released	2025-02-05
Method	ELECTRON MICROSCOPY 3 Å
Organisms	Nocardiopsis dassonvillei
Macromolecule	AlbB (protein) Nitroreductase (protein)
Unique Ligands	FMN

1 to 22 of 22 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

2C7Y | pdb_00002c7y

2C7Z | pdb_00002c7z

2IYO | pdb_00002iyo

2IYP | pdb_00002iyp

2IZ0 | pdb_00002iz0

2IZ1 | pdb_00002iz1

2VRZ | pdb_00002vrz

2VS0 | pdb_00002vs0

2XB0 | pdb_00002xb0

5AGC | pdb_00005agc

5C1Z | pdb_00005c1z

5C23 | pdb_00005c23

5N2W | pdb_00005n2w

5N38 | pdb_00005n38

5O6C | pdb_00005o6c

6FTX | pdb_00006ftx

6G0L | pdb_00006g0l

6N13 | pdb_00006n13

8ANE | pdb_00008ane

8B2X | pdb_00008b2x

8OV6 | pdb_00008ov6

9EXV | pdb_00009exv