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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Wu, Y."

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Search Summary

This query matches 1,016 Structures.

Refinements

Structure Determination Methodology

experimental (1,016)

Scientific Name of Source Organism

	Homo sapiens (402)
	synthetic construct (99)
	Mus musculus (75)
	Severe acute respiratory syndrome coronavirus 2 (59)
	Escherichia coli (30)
	Coxsackievirus B1 (26)
	Influenza A virus (25)
	Rattus norvegicus (21)
	Gallus gallus (17)
	Escherichia coli K-12 (16)

More...

Taxonomy

	Eukaryota (615)
	Riboviria (259)
	Bacteria (210)
	other sequences (99)
	Archaea (35)
	Varidnaviria (14)
	Duplodnaviria (10)
	unclassified sequences (6)
	unclassified bacterial viruses (2)
	Eukaryota (eukaryotes) (1)

Experimental Method

	X-RAY DIFFRACTION (720)
	ELECTRON MICROSCOPY (210)
	SOLUTION NMR (85)
	SOLID-STATE NMR (1)

Polymer Entity Type

	Protein (1,006)
	DNA (42)
	RNA (27)

Refinement Resolution (Å)

	0.5 - 1.0 (1)
	1.0 - 1.5 (50)
	1.5 - 2.0 (221)
	2.0 - 2.5 (219)
	2.5 - 3.0 (205)
	3.0 - 3.5 (139)
	3.5 - 4.0 (71)
	4.0 - 4.5 (10)
	> 4.5 (14)

Release Date

	1995 - 1999 (4)
	2000 - 2004 (24)
	2005 - 2009 (76)
	2010 - 2014 (171)
	2015 - 2019 (294)
	2020 - 2024 (428)
	2025 - 2029 (19)

Enzyme Classification Name

	Hydrolases (317)
	Transferases (160)
	Oxidoreductases (51)
	Isomerases (14)
	Lyases (8)
	Ligases (3)

Membrane Protein Annotation

	PDBTM (83)
	mpstruc (76)
	OPM (53)
	MemProtMD (47)

Symmetry Type

	Asymmetric (686)
	Cyclic (237)
	Icosahedral (58)
	Dihedral (31)
	Octahedral (12)
	Helical (1)
	Tetrahedral (1)

SCOP Classification

	All beta proteins (174)
	All alpha proteins (79)
	Alpha and beta proteins (a/b) (69)
	Alpha and beta proteins (a+b) (83)
	Artifacts (75)
	Coiled coil proteins (13)
	Multi-domain proteins (alpha and beta) (9)
	Small proteins (7)
	Membrane and cell surface proteins and peptides (3)

AllSelected

1 to 25 of 1,016 Structures

Page 1 of 41

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1CS7 \| pdb_00001cs7	Download File View File

SYNTHETIC DNA HAIRPIN WITH STILBENEDIETHER LINKER

Lewis, F.D., Liu, X., Wu, Y., Miller, S.E., Wasielewski, M.R., Letsinger, R.L., Sanishvili, R., Joachimiak, A., Tereshko, V., Egli, M.

(1999) J Am Chem Soc 121: 9905-9906

Released	2001-10-19
Method	X-RAY DIFFRACTION 3.2 Å
Macromolecule	5'-D(GP(BRU)PTPTPTPGP(S02)CPAPAPAPAPC)-3' (nucleic acid)
Unique Ligands	SR

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1DJW \| pdb_00001djw	Download File View File

PHOSPHOINOSITIDE-SPECIFIC PHOSPHOLIPASE C-DELTA1 FROM RAT COMPLEXED WITH INOSITOL-2-METHYLENE-1,2-CYCLIC-MONOPHOSPHONATE

Essen, L.-O., Perisic, O., Williams, R.L.

(1997) Biochemistry 36: 1704-1718

Released	1997-07-23
Method	X-RAY DIFFRACTION 2.45 Å
Organisms	Rattus norvegicus
Macromolecule	PHOSPHOINOSITIDE-SPECIFIC PHOSPHOLIPASE C, ISOZYME DELTA1 (protein)
Unique Ligands	ACT, CA, CIP

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1DJX \| pdb_00001djx	Download File View File

PHOSPHOINOSITIDE-SPECIFIC PHOSPHOLIPASE C-DELTA1 FROM RAT COMPLEXED WITH INOSITOL-1,4,5-TRISPHOSPHATE

Essen, L.-O., Perisic, O., Williams, R.L.

(1997) Biochemistry 36: 1704-1718

Released	1997-07-07
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Rattus norvegicus
Macromolecule	PHOSPHOINOSITIDE-SPECIFIC PHOSPHOLIPASE C, ISOZYME DELTA1 (protein)
Unique Ligands	ACT, CA, I3P

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1DJY \| pdb_00001djy	Download File View File

PHOSPHOINOSITIDE-SPECIFIC PHOSPHOLIPASE C-DELTA1 FROM RAT COMPLEXED WITH INOSITOL-2,4,5-TRISPHOSPHATE

Essen, L.-O., Perisic, O., Williams, R.L.

(1997) Biochemistry 36: 1704-1718

Released	1997-07-07
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Rattus norvegicus
Macromolecule	PHOSPHOINOSITIDE-SPECIFIC PHOSPHOLIPASE C, ISOZYME DELTA1 (protein)
Unique Ligands	ACT, CA, I2P

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1DJZ \| pdb_00001djz	Download File View File

PHOSPHOINOSITIDE-SPECIFIC PHOSPHOLIPASE C-DELTA1 FROM RAT COMPLEXED WITH INOSITOL-4,5-BISPHOSPHATE

Essen, L.-O., Perisic, O., Williams, R.L.

(1997) Biochemistry 36: 1704-1718

Released	1997-07-07
Method	X-RAY DIFFRACTION 2.95 Å
Organisms	Rattus norvegicus
Macromolecule	PHOSPHOINOSITIDE-SPECIFIC PHOSPHOLIPASE C, ISOZYME DELTA1 (protein)
Unique Ligands	ACT, CA, IP2

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1F03 \| pdb_00001f03	Download File View File

SOLUTION STRUCTURE OF OXIDIZED BOVINE MICROSOMAL CYTOCHROME B5 MUTANT (E44A, E48A, E56A, D60A) AND ITS INTERACTION WITH CYTOCHROME C

Wu, Y.B., Lu, J., Qian, C.M., Tang, W.X., Li, E.C., Wang, J.F., Wang, Y.H., Wang, W.H., Lu, J.X., Xie, Y., Huang, Z.X.

(2001) Eur J Biochem 268: 1620-1630

Released	2000-06-21
Method	SOLUTION NMR
Organisms	Bos taurus
Macromolecule	CYTOCHROME B5 (protein)
Unique Ligands	HEM

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1F04 \| pdb_00001f04	Download File View File

SOLUTION STRUCTURE OF OXIDIZED BOVINE MICROSOMAL CYTOCHROME B5 MUTANT (E44A, E48A, E56A, D60A) AND ITS INTERACTION WITH CYTOCHROME C

Wu, Y.B., Lu, J., Qian, C.M., Tang, W.X., Li, E.C., Wang, J.F., Wang, Y.H., Wang, W.H., Lu, J.X., Xie, Y., Huang, Z.X.

(2001) Eur J Biochem 268: 1620-1630

Released	2000-06-21
Method	SOLUTION NMR
Organisms	Bos taurus
Macromolecule	CYTOCHROME B5 (protein)
Unique Ligands	HEM

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1FI7 \| pdb_00001fi7	Download File View File

Solution structure of the imidazole complex of cytochrome C

Banci, L., Bertini, I., Liu, G., Lu, J., Reddig, T., Tang, W., Wu, Y., Zhu, D.

(2001) J Biol Inorg Chem 6: 628-637

Released	2000-08-23
Method	SOLUTION NMR
Organisms	Equus caballus
Macromolecule	CYTOCHROME C (protein)
Unique Ligands	HEC, IMD

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1FI9 \| pdb_00001fi9	Download File View File

SOLUTION STRUCTURE OF THE IMIDAZOLE COMPLEX OF CYTOCHROME C

Banci, L., Bertini, I., Liu, G., Lu, J., Reddig, T., Tang, W., Wu, Y., Zhu, D.

(2001) J Biol Inorg Chem 6: 628-637

Released	2000-08-23
Method	SOLUTION NMR
Organisms	Equus caballus
Macromolecule	CYTOCHROME C (protein)
Unique Ligands	HEC, IMD

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1L4U \| pdb_00001l4u	Download File View File

CRYSTAL STRUCTURE OF SHIKIMATE KINASE FROM MYCOBACTERIUM TUBERCULOSIS IN COMPLEX WITH MGADP AND PT(II) AT 1.8 ANGSTROM RESOLUTION

Gu, Y., Reshetnikova, L., Li, Y., Wu, Y., Yan, H., Singh, S., Ji, X.

(2002) J Mol Biology 319: 779-789

Released	2002-06-12
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Mycobacterium tuberculosis
Macromolecule	SHIKIMATE KINASE (protein)
Unique Ligands	ADP, CL, EPE, MG, PT

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1L4Y \| pdb_00001l4y	Download File View File

CRYSTAL STRUCTURE OF SHIKIMATE KINASE FROM MYCOBACTERIUM TUBERCULOSIS IN COMPLEX WITH MGADP AT 2.0 ANGSTROM RESOLUTION

Gu, Y., Reshetnikova, L., Li, Y., Wu, Y., Yan, H., Singh, S., Ji, X.

(2002) J Mol Biology 319: 779-789

Released	2002-06-12
Method	X-RAY DIFFRACTION 2 Å
Organisms	Mycobacterium tuberculosis
Macromolecule	SHIKIMATE KINASE (protein)
Unique Ligands	ADP, CL, MG

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1OP1 \| pdb_00001op1	Download File View File

Solution NMR structure of domain 1 of receptor associated protein

Wu, Y., Migliorini, M., Yu, P., Strickland, D.K., Wang, Y.-X.

(2003) J Biomol NMR 26: 187-188

Released	2003-08-26
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Alpha-2-macroglobulin receptor-associated protein precursor (protein)

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1OV2 \| pdb_00001ov2	Download File View File

Ensemble of the solution structures of domain one of receptor associated protein

Wu, Y., Migliorini, M., Yu, P., Strickland, D.K., Wang, Y.X.

(2003) J Biomol NMR 26: 187-188

Released	2004-04-06
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Alpha-2-macroglobulin receptor-associated protein precursor (protein)

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1PG9 \| pdb_00001pg9	Download File View File

NMR Solution Structure of an Oxaliplatin 1,2-d(GG) Intrastrand Cross-Link in a DNA Dodecamer Duplex

Wu, Y., Pradhan, P., Havener, J., Chaney, S.G., Campbel, S.L.

(2004) J Mol Biology 341: 1251-1269

Released	2004-07-06
Method	SOLUTION NMR
Macromolecule	5'-D(CPCPTPCPAPGPGPCPCPTPCPC)-3' (nucleic acid) 5'-D(GPGPAPGPGPCPCPTPGPAPGPG)-3' (nucleic acid)
Unique Ligands	1PT

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1PGC \| pdb_00001pgc	Download File View File

NMR Solution Structure of an Oxaliplatin 1,2-d(GG) Intrastrand Cross-Link in a DNA Dodecamer Duplex

Wu, Y., Pradhan, P., Havener, J., Chaney, S.G., Campbel, S.L.

(2004) J Mol Biology 341: 1251-1269

Released	2004-07-06
Method	SOLUTION NMR
Macromolecule	5'-D(CPCPTPCPAPGPGPCPCPTPCPC)-3' (nucleic acid) 5'-D(GPGPAPGPGPCPCPTPGPAPGPG)-3' (nucleic acid)
Unique Ligands	1PT

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1RII \| pdb_00001rii	Download File View File

Crystal structure of phosphoglycerate mutase from M. Tuberculosis

Mueller, P., Sawaya, M.R., Chan, S., Wu, Y., Pashkova, I., Perry, J., Eisenberg, D., TB Structural Genomics Consortium (TBSGC)

(2005) Acta Crystallogr D Biol Crystallogr 61: 309-315

Released	2004-10-05
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Mycobacterium tuberculosis
Macromolecule	2,3-bisphosphoglycerate-dependent phosphoglycerate mutase (protein)
Unique Ligands	GOL

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1RJY \| pdb_00001rjy	Download File View File

Mhc Class I Natural Mutant H-2Kbm8 Heavy Chain Complexed With beta-2 Microglobulin and Herpes Simplex Virus Glycoprotein B Peptide

Miley, M.J., Messaoudi, I., Nikolich-Zugich, J., Fremont, D.H.

(2004) J Exp Medicine 200: 1445-1454

Released	2004-12-14
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Herpes simplex virus unknown type Mus musculus
Macromolecule	Beta-2-microglobulin (protein) Glycoprotein B (protein) H-2 class I histocompatibility antigen, K-B alpha chain (protein)

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1RJZ \| pdb_00001rjz	Download File View File

Mhc Class I Natural Mutant H-2Kbm8 Heavy Chain Complexed With beta-2 Microglobulin and Herpies Simplex Virus Mutant Glycoprotein B Peptide

Miley, M.J., Messaoudi, I., Nikolich-Zugich, J., Fremont, D.H.

(2004) J Exp Medicine 200: 1445-1454

Released	2004-12-14
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Human herpesvirus 1 (strain F) Mus musculus
Macromolecule	Beta-2-microglobulin (protein) Glycoprotein B (protein) H-2 class I histocompatibility antigen, K-B alpha chain (protein)

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1RK0 \| pdb_00001rk0	Download File View File

Mhc Class I H-2Kb Heavy Chain Complexed With beta-2 Microglobulin and Herpes Simplex Virus Glycoprotein B peptide

Miley, M.J., Messaoudi, I., Nikolich-Zugich, J., Fremont, D.H.

(2004) J Exp Medicine 200: 1445-1454

Released	2004-12-14
Method	X-RAY DIFFRACTION 2.61 Å
Organisms	Human herpesvirus 1 (strain F) Mus musculus
Macromolecule	Beta-2-microglobulin (protein) Glycoprotein B (protein) H-2 class I histocompatibility antigen, K-B alpha chain (protein)
Unique Ligands	NAG

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1RK1 \| pdb_00001rk1	Download File View File

Mhc Class I Natural H-2Kb Heavy Chain Complexed With beta-2 Microglobulin and Herpes Simplex Virus Mutant Glycoprotein B Peptide

Miley, M.J., Messaoudi, I., Nikolich-Zugich, J., Fremont, D.H.

(2004) J Exp Medicine 200: 1445-1454

Released	2004-12-14
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Human herpesvirus 1 (strain F) Mus musculus
Macromolecule	Beta-2-microglobulin (protein) Glycoprotein B (protein) H-2 class I histocompatibility antigen, K-B alpha chain (protein)
Unique Ligands	NAG
Unique branched monosaccharides	FUL, NAG

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1RTZ \| pdb_00001rtz	Download File View File

CRYSTAL STRUCTURE OF E.COLI APO-HPPK(V83G/DEL84-89) AT 1.33 ANGSTROM RESOLUTION

Blaszczyk, J., Ji, X.

(2004) Biochemistry 43: 1469-1477

Released	2004-02-24
Method	X-RAY DIFFRACTION 1.33 Å
Organisms	Escherichia coli
Macromolecule	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase (protein)
Unique Ligands	CL, GOL, MG

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1RU1 \| pdb_00001ru1	Download File View File

CRYSTAL STRUCTURE OF A TERNARY COMPLEX OF E. COLI HPPK(V83G/DEL84-89) WITH MGAMPCPP AND 6-HYDROXYMETHYL-7,8-DIHYDROPTERIN AT 1.40 ANGSTROM RESOLUTION (MONOCLINIC FORM)

Blaszczyk, J., Ji, X.

(2004) Biochemistry 43: 1469-1477

Released	2004-02-24
Method	X-RAY DIFFRACTION 1.4 Å
Organisms	Escherichia coli
Macromolecule	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase (protein)
Unique Ligands	APC, CL, MG, PH2

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1RU2 \| pdb_00001ru2	Download File View File

CRYSTAL STRUCTURE OF A TERNARY COMPLEX OF E.COLI HPPK(V83G/DEL84-89) WITH MGAMPCPP AND 6-HYDROXYMETHYLPTERIN AT 1.48 ANGSTROM RESOLUTION (ORTHORHOMBIC FORM)

Blaszczyk, J., Ji, X.

(2004) Biochemistry 43: 1469-1477

Released	2004-02-24
Method	X-RAY DIFFRACTION 1.48 Å
Organisms	Escherichia coli
Macromolecule	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase (protein)
Unique Ligands	APC, CL, HHR, MG

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1T4G \| pdb_00001t4g	Download File View File

ATPase in complex with AMP-PNP

Wu, Y., He, Y., Moya, I.A., Qian, X., Luo, Y.

(2004) Mol Cell 15: 423-435

Released	2004-08-17
Method	X-RAY DIFFRACTION 2 Å
Organisms	Methanococcus voltae
Macromolecule	DNA repair and recombination protein radA (protein)
Unique Ligands	ANP, MG

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1TMJ \| pdb_00001tmj	Download File View File

Crystal structure of E.coli apo-HPPK(W89A) at 1.45 Angstrom resolution

Blaszczyk, J., Ji, X.

(2005) Biochemistry 44: 8590-8599

Released	2005-06-21
Method	X-RAY DIFFRACTION 1.45 Å
Organisms	Escherichia coli
Macromolecule	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase (protein)
Unique Ligands	CL, MG

1 to 25 of 1,016 Structures

Page 1 of 41

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1CS7 | pdb_00001cs7

1DJW | pdb_00001djw

1DJX | pdb_00001djx

1DJY | pdb_00001djy

1DJZ | pdb_00001djz

1F03 | pdb_00001f03

1F04 | pdb_00001f04

1FI7 | pdb_00001fi7

1FI9 | pdb_00001fi9

1L4U | pdb_00001l4u

1L4Y | pdb_00001l4y

1OP1 | pdb_00001op1

1OV2 | pdb_00001ov2

1PG9 | pdb_00001pg9

1PGC | pdb_00001pgc

1RII | pdb_00001rii

1RJY | pdb_00001rjy

1RJZ | pdb_00001rjz

1RK0 | pdb_00001rk0

1RK1 | pdb_00001rk1

1RTZ | pdb_00001rtz

1RU1 | pdb_00001ru1

1RU2 | pdb_00001ru2

1T4G | pdb_00001t4g

1TMJ | pdb_00001tmj