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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Xu, C."

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Search Summary

This query matches 25 Structures.

Refinements

Structure Determination Methodology

experimental (25)

Scientific Name of Source Organism

	Homo sapiens (14)
	Mus musculus (9)
	Rattus norvegicus (3)
	Severe acute respiratory syndrome coronavirus 2 (2)

Taxonomy

	Eukaryota (23)
	Riboviria (2)

Experimental Method

X-RAY DIFFRACTION (25)

Polymer Entity Type

Protein (25)

Refinement Resolution (Å)

	1.0 - 1.5 (1)
	1.5 - 2.0 (5)
	2.0 - 2.5 (11)
	2.5 - 3.0 (8)

Release Date

	2005 - 2009 (9)
	2010 - 2014 (11)
	2015 - 2019 (3)
	2020 - 2024 (2)

Enzyme Classification Name

	Transferases (7)
	Hydrolases (5)

Membrane Protein Annotation

OPM (2)

Symmetry Type

	Asymmetric (20)
	Cyclic (7)
	Dihedral (1)

SCOP Classification

	All beta proteins (13)
	Alpha and beta proteins (a/b) (3)
	Alpha and beta proteins (a+b) (3)
	All alpha proteins (2)

AllSelected

1 to 25 of 25 Structures

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1ZND \| pdb_00001znd	Download File View File

Strong Solute-Solute Dispersive Interactions in a Protein-Ligand Complex

Malham, R., Johnstone, S., Bingham, R.J., Barratt, E., Phillips, S.E., Laughton, C.A., Homans, S.W.

(2005) J Am Chem Soc 127: 17061-17067

Released	2005-12-20
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Mus musculus
Macromolecule	Major Urinary Protein (protein)
Unique Ligands	CD, PE9

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1ZNE \| pdb_00001zne	Download File View File

Strong Solute-Solute Dispersive Interactions in a Protein-Ligand Complex

Malham, R., Johnstone, S., Bingham, R.J., Barratt, E., Phillips, S.E., Laughton, C.A., Homans, S.W.

(2005) J Am Chem Soc 127: 17061-17067

Released	2005-12-20
Method	X-RAY DIFFRACTION 2 Å
Organisms	Mus musculus
Macromolecule	Major Urinary Protein (protein)
Unique Ligands	CD, HE2

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1ZNG \| pdb_00001zng	Download File View File

Strong Solute-Solute Dispersive Interactions in a Protein-Ligand Complex

Malham, R., Johnstone, S., Bingham, R.J., Barratt, E., Phillips, S.E., Laughton, C.A., Homans, S.W.

(2005) J Am Chem Soc 127: 17061-17067

Released	2005-12-20
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Mus musculus
Macromolecule	Major Urinary Protein (protein)
Unique Ligands	CD, HE4

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1ZNH \| pdb_00001znh	Download File View File

Strong Solute-Solute Dispersive Interactions in a Protein-Ligand Complex

Malham, R., Johnstone, S., Bingham, R.J., Barratt, E., Phillips, S.E., Laughton, C.A., Homans, S.W.

(2005) J Am Chem Soc 127: 17061-17067

Released	2005-12-20
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Mus musculus
Macromolecule	Major Urinary Protein (protein)
Unique Ligands	CD, OC9

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1ZNK \| pdb_00001znk	Download File View File

Strong Solute-Solute Dispersive Interactions in a Protein-Ligand Complex

Malham, R., Johnstone, S., Bingham, R.J., Barratt, E., Phillips, S.E., Laughton, C.A., Homans, S.W.

(2005) J Am Chem Soc 127: 17061-17067

Released	2005-12-20
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Mus musculus
Macromolecule	Major Urinary Protein (protein)
Unique Ligands	CD, F09

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1ZNL \| pdb_00001znl	Download File View File

Strong Solute-Solute Dispersive Interactions in a Protein-Ligand Complex

Malham, R., Johnstone, S., Bingham, R.J., Barratt, E., Phillips, S.E., Laughton, C.A., Homans, S.W.

(2005) J Am Chem Soc 127: 17061-17067

Released	2005-12-20
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Mus musculus
Macromolecule	Major Urinary Protein (protein)
Unique Ligands	CD, DE1

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3FMZ \| pdb_00003fmz	Download File View File

Crystal Structure of Retinol-Binding Protein 4 (RBP4) in complex with non-retinoid ligand

Wang, Z., Johnstone, S., Walker, N.P.

(2009) J Biological Chem 284: 7673-7680

Released	2009-01-27
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Homo sapiens
Macromolecule	Retinol-binding protein 4 (protein)
Unique Ligands	2T1

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3GZ9 \| pdb_00003gz9	Download File View File

Crystal Structure of Peroxisome Proliferator-Activated Receptor Delta (PPARd) in Complex with a Full Agonist

Wang, Z., Sudom, A., Walker, N.P.

(2009) Bioorg Med Chem Lett 19: 3550-3554

Released	2009-06-30
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	Peroxisome proliferator-activated receptor delta (protein)
Unique Ligands	B7G, D32

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3H0A \| pdb_00003h0a	Download File View File

Crystal Structure of Peroxisome Proliferator-Activated Receptor Gamma (PPARg) and Retinoic Acid Receptor Alpha (RXRa) in Complex with 9-cis Retinoic Acid, Co-activator Peptide, and a Partial Agonist

Wang, Z., Sudom, A., Walker, N.P.

(2009) Bioorg Med Chem Lett 19: 3550-3554

Released	2009-06-09
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens
Macromolecule	Nuclear receptor coactivator 1, Co-activator Peptide (protein) Peroxisome proliferator-activated receptor gamma (protein) Retinoic acid receptor RXR-alpha (protein)
Unique Ligands	9RA, D30

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3VZB \| pdb_00003vzb	Download File View File

Crystal structure of Sphingosine Kinase 1

Min, X., Walker, N.P., Wang, Z.

(2013) Structure 21: 798-809

Released	2013-05-08
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	Sphingosine kinase 1 (protein)
Unique Ligands	EDO, SO4, SQS

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3VZC \| pdb_00003vzc	Download File View File

Crystal structure of Sphingosine Kinase 1 with inhibitor

Min, X., Walker, N.P., Wang, Z.

(2013) Structure 21: 798-809

Released	2013-05-08
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Homo sapiens
Macromolecule	Sphingosine kinase 1 (protein)
Unique Ligands	EDO, UUL

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3VZD \| pdb_00003vzd	Download File View File

Crystal structure of Sphingosine Kinase 1 with inhibitor and ADP

Min, X., Walker, N.P., Wang, Z.

(2013) Structure 21: 798-809

Released	2013-05-01
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Homo sapiens
Macromolecule	Sphingosine kinase 1 (protein)
Unique Ligands	ADP, CL, MG, POP, UUL

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4DN5 \| pdb_00004dn5	Download File View File

Crystal Structure of NF-kB-inducing Kinase (NIK)

Min, X., Liu, J., Sudom, A., Walker, N.P., Wang, Z.

(2012) J Biological Chem 287: 27326-27334

Released	2012-06-27
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Homo sapiens
Macromolecule	Mitogen-activated protein kinase kinase kinase 14 (protein)
Unique Ligands	AGS, EDO, GOL, MG

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4DT6 \| pdb_00004dt6	Download File View File

Co-crystal structure of eIF4E with inhibitor

Min, X., Johnstone, S., Walker, N., Wang, Z.

(2012) J Med Chem 55: 3837-3851

Released	2012-04-11
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Homo sapiens
Macromolecule	Eukaryotic translation initiation factor 4E (protein)
Unique Ligands	6LI, EDO, GOL

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4DUM \| pdb_00004dum	Download File View File

Co-crystal structure of eIF4E with inhibitor

Min, X., Johnstone, S., Walker, N., Wang, Z.

(2012) J Med Chem 55: 3837-3851

Released	2012-04-11
Method	X-RAY DIFFRACTION 2.95 Å
Organisms	Homo sapiens
Macromolecule	Eukaryotic translation initiation factor 4E (protein)
Unique Ligands	EDO, HLI

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4FFV \| pdb_00004ffv	Download File View File

Crystal Structure of Dipeptidyl Peptidase IV (DPP4, DPP-IV, CD26) in Complex with 11A19 Fab

Wang, Z., Sudom, A., Walker, N.P., Min, X.

To be published

Released	2012-12-12
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Mus musculus Rattus norvegicus
Macromolecule	11A19 Fab heavy chain (protein) 11A19 Fab light chain (protein) Dipeptidyl peptidase 4 (protein)

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4FFW \| pdb_00004ffw	Download File View File

Crystal Structure of Dipeptidyl Peptidase IV (DPP4, DPP-IV, CD26) in Complex with Fab + sitagliptin

Wang, Z., Sudom, A., Walker, N.P., Min, X.

To be published

Released	2012-12-12
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Mus musculus Rattus norvegicus
Macromolecule	Dipeptidyl peptidase 4 (protein) Fab heavy chain (protein) Fab light chain (protein)
Unique Ligands	715

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4L02 \| pdb_00004l02	Download File View File

Crystal Structure of SphK1 with inhibitor

Min, X., Walker, N., Wang, Z.

(2013) Bioorg Med Chem Lett 23: 4608-4616

Released	2013-07-24
Method	X-RAY DIFFRACTION 2.75 Å
Organisms	Homo sapiens
Macromolecule	Sphingosine kinase 1 (protein)
Unique Ligands	1V2

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4O9S \| pdb_00004o9s	Download File View File

Crystal structure of Retinol-Binding Protein 4 (RBP4)in complex with a non-retinoid ligand

Wang, Z., Johnstone, S., Walker, N.P.

(2014) Bioorg Med Chem Lett 24: 2885-2891

Released	2014-07-02
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Homo sapiens
Macromolecule	Retinol-binding protein 4 (protein)
Unique Ligands	2RY, CL, EDO, PEG

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4PSQ \| pdb_00004psq	Download File View File

Crystal Structure of Retinol-Binding Protein 4 (RBP4) in complex with a non-retinoid ligand

Wang, Z., Johnstone, S., Walker, N.

(2014) Bioorg Med Chem Lett 24: 2885-2891

Released	2014-07-02
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Homo sapiens
Macromolecule	Retinol-binding protein 4 (protein)
Unique Ligands	2WL, EDO, PO4

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4RMZ \| pdb_00004rmz	Download File View File

Crystal Structure of IRAK-4

Johnstone, S., Sudom, A., Liu, J., Walker, N.P., Wang, Z.

To be published

Released	2016-01-13
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Homo sapiens
Macromolecule	Interleukin-1 receptor-associated kinase 4 (protein)
Unique Ligands	T20

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5VTA \| pdb_00005vta	Download File View File

Co-Crystal Structure of DPPIV with a Chemibody Inhibitor

Wang, Z., Johnstone, S., Cheng, A.

(2018) Sci Rep 8: 7570-7570

Released	2018-05-09
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Mus musculus Rattus norvegicus
Macromolecule	Dipeptidyl peptidase 4 (protein) Fab heavy chain (protein) Fab light chain (protein)
Unique Ligands	9K4, EDO, NAG, PEG, PG4

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5WI9 \| pdb_00005wi9	Download File View File

Crystal structure of KL with an agonist Fab

Johnstone, S., Min, X., Wang, Z.

(2018) J Biological Chem 293: 14678-14688

Released	2018-07-25
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Homo sapiens
Macromolecule	39F7 Fab heavy chain (protein) 39F7 Fab light chain (protein) Beta-klotho (protein)
Unique Ligands	EDO, NAG, PG4, SO4

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9GIJ \| pdb_00009gij	Download File View File

Crystal structure of SARS-CoV-2 Mpro with compound 5

Prasad, A., Schmitt, A., Preuss, F., Maskos, K., Wang, X., Gotchev, D., Konz Makino, D.L.

(2024) J Med Chem 67: 19623-19667

Released	2024-11-06
Method	X-RAY DIFFRACTION 1.476 Å
Organisms	Severe acute respiratory syndrome coronavirus 2
Macromolecule	3C-like proteinase nsp5 (protein)
Unique Ligands	A1IL0

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9GIL \| pdb_00009gil	Download File View File

Crystal structure of SARS-CoV-2 Mpro with compound 12

Schmitt, A., Preuss, F., Prasad, A., Maskos, K., Wang, X., Gotchev, D., Konz Makino, D.L.

(2024) J Med Chem 67: 19623-19667

Released	2024-11-06
Method	X-RAY DIFFRACTION 1.849 Å
Organisms	Severe acute respiratory syndrome coronavirus 2
Macromolecule	3C-like proteinase nsp5 (protein)
Unique Ligands	A1IL7, EDO, GOL, SO4

1 to 25 of 25 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1ZND | pdb_00001znd

1ZNE | pdb_00001zne

1ZNG | pdb_00001zng

1ZNH | pdb_00001znh

1ZNK | pdb_00001znk

1ZNL | pdb_00001znl

3FMZ | pdb_00003fmz

3GZ9 | pdb_00003gz9

3H0A | pdb_00003h0a

3VZB | pdb_00003vzb

3VZC | pdb_00003vzc

3VZD | pdb_00003vzd

4DN5 | pdb_00004dn5

4DT6 | pdb_00004dt6

4DUM | pdb_00004dum

4FFV | pdb_00004ffv

4FFW | pdb_00004ffw

4L02 | pdb_00004l02

4O9S | pdb_00004o9s

4PSQ | pdb_00004psq

4RMZ | pdb_00004rmz

5VTA | pdb_00005vta

5WI9 | pdb_00005wi9

9GIJ | pdb_00009gij

9GIL | pdb_00009gil