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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Xu, N."

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Search Summary

This query matches 45 Structures.

Refinements

Structure Determination Methodology

experimental (45)

Scientific Name of Source Organism

	Homo sapiens (21)
	Pseudomonas fluorescens (4)
	Legionella pneumophila (3)
	Pseudomonas aeruginosa PAO1 (3)
	Severe acute respiratory syndrome coronavirus 2 (3)
	Burkholderia lata (2)
	Staphylococcus aureus (2)
	unidentified (2)
	Acinetobacter calcoaceticus (1)
	Leiurus hebraeus (1)

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Taxonomy

	Eukaryota (26)
	Bacteria (17)
	Riboviria (4)
	unclassified sequences (2)
	Eukaryota (eukaryotes) (1)
	other sequences (1)

Experimental Method

	X-RAY DIFFRACTION (32)
	SOLUTION NMR (13)

Polymer Entity Type

	Protein (39)
	DNA (6)
	RNA (2)

Refinement Resolution (Å)

	1.0 - 1.5 (4)
	1.5 - 2.0 (10)
	2.0 - 2.5 (6)
	2.5 - 3.0 (6)
	3.0 - 3.5 (6)

Release Date

	2000 - 2004 (3)
	2005 - 2009 (2)
	2010 - 2014 (10)
	2015 - 2019 (15)
	2020 - 2024 (14)
	2025 - 2029 (1)

Enzyme Classification Name

	Oxidoreductases (7)
	Hydrolases (3)
	Isomerases (4)
	Transferases (3)

Membrane Protein Annotation

	MemProtMD (1)
	OPM (1)
	PDBTM (1)

Symmetry Type

	Asymmetric (26)
	Cyclic (14)

SCOP Classification

	All beta proteins (7)
	All alpha proteins (3)
	Alpha and beta proteins (a+b) (6)
	Artifacts (8)
	Membrane and cell surface proteins and peptides (1)
	Small proteins (3)

AllSelected

1 to 25 of 45 Structures

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1C9Q \| pdb_00001c9q	Download File View File

AVERAGE NMR SOLUTION STRUCTURE OF THE BIR-2 DOMAIN OF XIAP

Meadows, R.P., Fesik, S.W.

(1999) Nature 401: 818-822

Released	2000-08-09
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	APOPTOSIS INHIBITOR IAP HOMOLOG (protein)
Unique Ligands	ZN

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1F9X \| pdb_00001f9x	Download File View File

AVERAGE NMR SOLUTION STRUCTURE OF THE BIR-3 DOMAIN OF XIAP

Sun, C., Cai, M., Meadows, R.P., Fesik, S.W.

(2000) J Biological Chem 275: 33777-33781

Released	2001-07-11
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	INHIBITOR OF APOPTOSIS PROTEIN XIAP (protein)
Unique Ligands	ZN

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1SSK \| pdb_00001ssk	Download File View File

Structure of the N-terminal RNA-binding Domain of the SARS CoV Nucleocapsid Protein

Huang, Q., Yu, L., Petros, A.M., Gunasekera, A., Liu, Z., Xu, N., Hajduk, P., Mack, J., Fesik, S.W., Olejniczak, E.T.

(2004) Biochemistry 43: 6059-6063

Released	2004-06-08
Method	SOLUTION NMR
Organisms	Severe acute respiratory syndrome-related coronavirus
Macromolecule	Nucleocapsid protein (protein)

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2A9H \| pdb_00002a9h	Download File View File

NMR structural studies of a potassium channel / charybdotoxin complex

Yu, L., Sun, C., Song, D., Shen, J., Xu, N., Gunasekera, A., Hajduk, P.J., Olejniczak, E.T.

(2005) Biochemistry 44: 15834-15841

Released	2006-01-10
Method	SOLUTION NMR
Organisms	Leiurus hebraeus Streptomyces lividans
Macromolecule	Voltage-gated potassium channel (protein) charybdotoxin (protein)

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2DPF \| pdb_00002dpf	Download File View File

Crystal Structure of curculin1 homodimer

Kurimoto, E., Suzuki, M., Amemiya, E., Yamaguchi, Y., Nirasawa, S., Shimba, N., Xu, N., Kashiwagi, T., Kawai, M., Suzuki, E., Kato, K.

(2007) J Biological Chem 282: 33252-33256

Released	2007-05-15
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Molineria latifolia
Macromolecule	Curculin (protein)
Unique Ligands	SO4

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2KLQ \| pdb_00002klq	Download File View File

The solution structure of CBD of human MCM6

Liu, C.

(2010) J Biological Chem 285: 12469-12473

Released	2010-03-02
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	DNA replication licensing factor MCM6 (protein)

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2LOZ \| pdb_00002loz	Download File View File

The novel binding mode of DLC1 and Tensin2 PTB domain

Liu, C., Chen, L., Zhu, G.

(2012) J Biological Chem 287: 26104-26114

Released	2012-06-06
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Rho GTPase-activating protein 7 (protein) Tensin-like C1 domain-containing phosphatase (protein)

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2RUC \| pdb_00002ruc	Download File View File

Solution structure of the peptidyl prolyl cis-trans isomerase domain of human Pin1 with sulfate ion

Xu, N., Tamari, Y., Tochio, N., Tate, S.

(2014) Biochemistry 53: 5568-5578

Released	2014-12-17
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 (protein)

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2RUD \| pdb_00002rud	Download File View File

Solution structure of the peptidyl prolyl cis-trans isomerase domain of C113D mutant human Pin1 with sulfate ion

Xu, N., Tamari, Y., Tochio, N., Tate, S.

(2014) Biochemistry 53: 5568-5578

Released	2014-12-17
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 (protein)

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2RUQ \| pdb_00002ruq	Download File View File

solution structure of human Pin1 PPIase mutant C113A

Jing, W., Tochio, N., Tate, S.

(2015) Biochemistry 54: 5242-5253

Released	2016-01-06
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 (protein)

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2RUR \| pdb_00002rur	Download File View File

Solution structure of Human Pin1 PPIase C113S mutant

Jing, W., Tochio, N., Tate, S.

(2015) Biochemistry 54: 5242-5253

Released	2016-01-06
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 (protein)

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4HMS \| pdb_00004hms	Download File View File

Crystal structure of PhzG from Pseudomonas fluorescens 2-79 in complex with a second FMN in the substrate binding site

Xu, N.N., Ahuja, E.G., Blankenfeldt, W.

(2013) Acta Crystallogr D Biol Crystallogr 69: 1403-1413

Released	2013-08-07
Method	X-RAY DIFFRACTION 1.33 Å
Organisms	Pseudomonas fluorescens
Macromolecule	Phenazine biosynthesis protein phzG (protein)
Unique Ligands	FMN, SO4

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4HMT \| pdb_00004hmt	Download File View File

Crystal structure of PhzG from Pseudomonas fluorescens 2-79 in complex with hexahydrophenazine-1,6-dicarboxylic acid

Xu, N.N., Ahuja, E.G., Blankenfeldt, W.

(2013) Acta Crystallogr D Biol Crystallogr 69: 1403-1413

Released	2013-08-07
Method	X-RAY DIFFRACTION 1.42 Å
Organisms	Pseudomonas fluorescens
Macromolecule	Phenazine biosynthesis protein phzG (protein)
Unique Ligands	FMN, NNV, SO4

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4HMU \| pdb_00004hmu	Download File View File

Crystal structure of PhzG from Pseudomonas fluorescens 2-79 in complex with tetrahydrophenazine-1-carboxylic acid after 1 day of soaking

Xu, N.N., Ahuja, E.G., Blankenfeldt, W.

(2013) Acta Crystallogr D Biol Crystallogr 69: 1403-1413

Released	2013-08-07
Method	X-RAY DIFFRACTION 1.56 Å
Organisms	Pseudomonas fluorescens
Macromolecule	Phenazine biosynthesis protein phzG (protein)
Unique Ligands	FMN, SO4, WUB

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4HMV \| pdb_00004hmv	Download File View File

Crystal structure of PhzG from Pseudomonas fluorescens 2-79 in complex with tetrahydrophenazine-1-carboxylic acid after 5 days of soaking

Xu, N.N., Ahuja, E.G., Blankenfeldt, W.

(2013) Acta Crystallogr D Biol Crystallogr 69: 1403-1413

Released	2013-08-07
Method	X-RAY DIFFRACTION 1.45 Å
Organisms	Pseudomonas fluorescens
Macromolecule	Phenazine biosynthesis protein phzG (protein)
Unique Ligands	FMN, SO4, WUB

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4HMW \| pdb_00004hmw	Download File View File

Crystal structure of PhzG from Burkholderia lata 383

Xu, N.N., Ahuja, E.G., Blankenfeldt, W.

(2013) Acta Crystallogr D Biol Crystallogr 69: 1403-1413

Released	2013-08-07
Method	X-RAY DIFFRACTION 1.53 Å
Organisms	Burkholderia lata
Macromolecule	Pyridoxamine 5'-phosphate oxidase (protein)
Unique Ligands	FMN

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4HMX \| pdb_00004hmx	Download File View File

Crystal structure of PhzG from Burkholderia lata 383 in complex with tetrahydrophenazine-1-carboxylic acid

Xu, N.N., Ahuja, E.G., Blankenfeldt, W.

(2013) Acta Crystallogr D Biol Crystallogr 69: 1403-1413

Released	2013-08-07
Method	X-RAY DIFFRACTION 1.59 Å
Organisms	Burkholderia lata
Macromolecule	Pyridoxamine 5'-phosphate oxidase (protein)
Unique Ligands	FMN, WUB

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5GS4 \| pdb_00005gs4	Download File View File

Crystal structure of estrogen receptor alpha in complex with a stabilized peptide antagonist

Xie, M., Wang, T., Li, Z.-G.

(2017) J Med Chem 60: 8731-8740

Released	2017-08-30
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Homo sapiens unidentified
Macromolecule	ARG-IAS-ILE-LEU-DNP-ARG-LEU-LEU-GLN (protein) Estrogen receptor (protein)
Unique Ligands	EST, PO4

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5GTR \| pdb_00005gtr	Download File View File

estrogen receptor alpha in complex with a stabilized peptide antagonist 6

Xie, M., Wang, T., Li, Z.-G.

(2017) J Med Chem 60: 8731-8740

Released	2017-08-30
Method	X-RAY DIFFRACTION 2.804 Å
Organisms	Homo sapiens unidentified
Macromolecule	ARG-IAS-ILE-0JY-DPP-ARG-0JY-0JY-GLN-NH2 (protein) Estrogen receptor (protein)
Unique Ligands	EST

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5KD1 \| pdb_00005kd1	Download File View File

Sperm whale myoglobin H64A with nitrosoamphetamine

Wang, B., Guan, Y., Thomas, L.M., Richter-Addo, G.B.

(2017) Nitric Oxide 67: 26-29

Released	2017-05-10
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Physeter macrocephalus
Macromolecule	Myoglobin (protein)
Unique Ligands	3QM, GOL, HEM, SO4

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5YEY \| pdb_00005yey	Download File View File

The structure of a chair-type G-quadruplex of the human telomeric variant in K+ solution

Liu, C., Zhou, B., Kuryavyi, V.V., Zhu, G.

(2019) Chem Sci 10: 218-226

Released	2018-09-26
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	DNA (5'-D(GPGPGPTPTPAPGPGPGPTPTPAPGPGPGPTPTPTPGPGP*G)-3') (nucleic acid)

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5YIJ \| pdb_00005yij	Download File View File

Structure of a Legionella effector with substrates

Feng, Y., Mu, Y., Wang, H.

(2018) Nature 557: 674-678

Released	2018-05-30
Method	X-RAY DIFFRACTION 3.18 Å
Organisms	Homo sapiens Legionella pneumophila
Macromolecule	SdeA (protein) Ubiquitin (protein)
Unique Ligands	NAI

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5YIK \| pdb_00005yik	Download File View File

Structure of a Legionella effector with its substrate

Feng, Y., Dong, Y., Liu, Z.

(2018) Nature 557: 674-678

Released	2018-05-30
Method	X-RAY DIFFRACTION 3.102 Å
Organisms	Homo sapiens Legionella pneumophila
Macromolecule	SdeA (protein) ubiquitin (protein)

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5YIM \| pdb_00005yim	Download File View File

Structure of a Legionella effector

Feng, Y., Dong, Y., Wang, W.

(2018) Nature 557: 674-678

Released	2018-05-30
Method	X-RAY DIFFRACTION 3.394 Å
Organisms	Legionella pneumophila
Macromolecule	SdeA (protein)

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6A37 \| pdb_00006a37	Download File View File

X-ray structure of cyclohexanone monooxygenase from Acinetobacter calcoaceticus

Zhang, Y., Yu, H.L., Xu, J.H.

ACS Sustain Chem Eng

Released	2019-03-27
Method	X-RAY DIFFRACTION 2.204 Å
Organisms	Acinetobacter calcoaceticus
Macromolecule	Putative flavin-binding monooxygenase (protein)
Unique Ligands	FAD

1 to 25 of 45 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1C9Q | pdb_00001c9q

1F9X | pdb_00001f9x

1SSK | pdb_00001ssk

2A9H | pdb_00002a9h

2DPF | pdb_00002dpf

2KLQ | pdb_00002klq

2LOZ | pdb_00002loz

2RUC | pdb_00002ruc

2RUD | pdb_00002rud

2RUQ | pdb_00002ruq

2RUR | pdb_00002rur

4HMS | pdb_00004hms

4HMT | pdb_00004hmt

4HMU | pdb_00004hmu

4HMV | pdb_00004hmv

4HMW | pdb_00004hmw

4HMX | pdb_00004hmx

5GS4 | pdb_00005gs4

5GTR | pdb_00005gtr

5KD1 | pdb_00005kd1

5YEY | pdb_00005yey

5YIJ | pdb_00005yij

5YIK | pdb_00005yik

5YIM | pdb_00005yim

6A37 | pdb_00006a37