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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Xue, J."

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Search Summary

This query matches 118 Structures.

Refinements

Structure Determination Methodology

experimental (118)

Scientific Name of Source Organism

	Homo sapiens (64)
	Mus musculus (15)
	[Eubacterium] cellulosolvens (7)
	Chlorobium limicola (6)
	Vicugna pacos (5)
	Arabidopsis thaliana (4)
	Brassica napus (4)
	Ephydatia fluviatilis (4)
	Chromobacterium violaceum (3)
	Selenomonas sp. (3)

More...

Taxonomy

	Eukaryota (91)
	Bacteria (25)
	Riboviria (4)
	other sequences (2)
	unclassified sequences (2)

Experimental Method

	X-RAY DIFFRACTION (65)
	ELECTRON MICROSCOPY (51)
	SOLUTION NMR (2)

Polymer Entity Type

	Protein (118)
	RNA (22)
	NA-hybrid (3)

Refinement Resolution (Å)

	1.0 - 1.5 (8)
	1.5 - 2.0 (20)
	2.0 - 2.5 (27)
	2.5 - 3.0 (22)
	3.0 - 3.5 (29)
	3.5 - 4.0 (8)
	4.0 - 4.5 (1)
	> 4.5 (1)

Release Date

	2005 - 2009 (1)
	2010 - 2014 (10)
	2015 - 2019 (16)
	2020 - 2024 (89)
	2025 - 2029 (2)

Enzyme Classification Name

	Hydrolases (24)
	Transferases (8)
	Lyases (5)
	Oxidoreductases (1)

Membrane Protein Annotation

	PDBTM (26)
	MemProtMD (21)
	mpstruc (20)
	OPM (19)

Symmetry Type

	Asymmetric (85)
	Cyclic (35)

SCOP Classification

	Membrane and cell surface proteins and peptides (6)
	All beta proteins (1)
	Artifacts (3)
	All alpha proteins (2)

AllSelected

1 to 25 of 118 Structures

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2L7U \| pdb_00002l7u	Download File View File

Structure of CEL-PEP-RAGE V domain complex

Xue, J., Rai, V., Schmidt, A., Frolov, S., Reverdatto, S., Singer, D., Chabierski, S., Xie, J., Burz, D., Shekhtman, A., Hoffman, R.

(2011) Structure 19: 722-732

Released	2011-05-18
Method	SOLUTION NMR
Organisms	Bos taurus Homo sapiens
Macromolecule	Advanced glycosylation end product-specific receptor (protein) Serum albumin peptide (protein)

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2MOV \| pdb_00002mov	Download File View File

Receptor for Advanced Glycation End Products (RAGE) Specifically Recognizes Methylglyoxal Derived AGEs.

Shekhtman, A., Xue, J., Ray, R., Singer, D., Bohme, D., Burz, D.S., Rai, V., Hoffman, R.

(2014) Biochemistry 53: 3327-3335

Released	2014-06-25
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Advanced glycosylation end product-specific receptor (protein)
Unique Ligands	IOR

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2YPJ \| pdb_00002ypj	Download File View File

Non-catalytic carbohydrate binding module CBM65B

Luis, A.S., Venditto, I., Prates, J.A.M., Ferreira, L.M.A., Temple, M.J., Rogowski, A., Basle, A., Xue, J., Knox, J.P., Gilbert, H.J., Fontes, C.M.G.A., Najmudin, S.

(2013) J Biological Chem 288: 4799

Released	2012-12-19
Method	X-RAY DIFFRACTION 2.35 Å
Organisms	[Eubacterium] cellulosolvens
Macromolecule	ENDOGLUCANASE CEL5A (protein)
Unique branched monosaccharides	BGC, XYS

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3EB7 \| pdb_00003eb7	Download File View File

Crystal Structure of Insecticidal Delta-Endotoxin Cry8Ea1 from Bacillus Thuringiensis at 2.2 Angstroms Resolution

Guo, S., Ye, S., Song, F., Zhang, J., Wei, L., Shu, C.L.

(2009) J Struct Biol 168: 259-266

Released	2008-09-16
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Bacillus thuringiensis
Macromolecule	Insecticidal Delta-Endotoxin Cry8Ea1 (protein)
Unique Ligands	ACT, SO4

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4AEK \| pdb_00004aek	Download File View File

Structural and biochemical characterization of a novel Carbohydrate Binding Module of endoglucanase Cel5A from Eubacterium cellulosolvens

Luis, A.S., Venditto, I., Prates, J.A.M., Ferreira, L.M.A., Gilbert, H.J., Fontes, C.M.G.A., Najmudin, S.

(2013) J Biological Chem 288: 4799

Released	2013-01-16
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	[Eubacterium] cellulosolvens
Macromolecule	ENDOGLUCANASE CEL5A (protein)

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4AEM \| pdb_00004aem	Download File View File

Structural and biochemical characterization of a novel Carbohydrate Binding Module of endoglucanase Cel5A from Eubacterium cellulosolvens

Luis, A.S., Venditto, I., Prates, J.A.M., Ferreira, L.M.A., Gilbert, H.J., Fontes, C.M.G.A., Najmudin, S.

(2013) J Biological Chem 288: 4799

Released	2013-01-23
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	[Eubacterium] cellulosolvens
Macromolecule	ENDOGLUCANASE CEL5A (protein)

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4AFD \| pdb_00004afd	Download File View File

Structural and biochemical characterization of a novel Carbohydrate Binding Module of endoglucanase Cel5A from Eubacterium cellulosolvens with a partially bound cellotetraose moeity.

Luis, A.S., Venditto, I., Prates, J.A.M., Ferreira, L.M.A., Gilbert, H.J., Fontes, C.M.G.A., Najmudin, S.

(2013) J Biological Chem 288: 4799

Released	2012-12-26
Method	X-RAY DIFFRACTION 1.34 Å
Organisms	[Eubacterium] cellulosolvens
Macromolecule	ENDOGLUCANASE CEL5A (protein)
Unique branched monosaccharides	BGC

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4AFM \| pdb_00004afm	Download File View File

Structural and biochemical characterization of a novel Carbohydrate Binding Module of endoglucanase Cel5A from Eubacterium cellulosolvens.

Luis, A.S., Venditto, I., Prates, J.A.M., Ferreira, L.M.A., Gilbert, H.J., Fontes, C.M.G.A., Najmudin, S.

(2013) J Biological Chem 288: 4799

Released	2012-12-19
Method	X-RAY DIFFRACTION 1.25 Å
Organisms	[Eubacterium] cellulosolvens
Macromolecule	ENDOGLUCANASE CEL5A (protein)
Unique Ligands	ACT, GOL

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4BA6 \| pdb_00004ba6	Download File View File

High Resolution structure of the C-terminal family 65 Carbohydrate Binding Module (CBM65B) of endoglucanase Cel5A from Eubacterium cellulosolvens

Venditto, I., Luis, A.S., Basle, A., Temple, M., Ferreira, L.M.A., Fontes, C.M.G.A., Gilbert, H.J., Najmudin, S.

(2013) J Biological Chem 288: 4799-4809

Released	2012-12-19
Method	X-RAY DIFFRACTION 1.42 Å
Organisms	[Eubacterium] cellulosolvens
Macromolecule	Endoglucanase cel5A (protein)
Unique Ligands	GOL

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4GAE \| pdb_00004gae	Download File View File

Crystal structure of plasmodium dxr in complex with a pyridine-containing inhibitor

Diao, J., Xue, J., Cai, G., Deng, L., Song, Y.

(2013) ACS Med Chem Lett 4: 278-282

Released	2013-02-06
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Plasmodium falciparum HB3
Macromolecule	1-deoxy-D-xylulose 5-phosphate reductoisomerase, apicoplast (protein)
Unique Ligands	ACT, CL, EDO, FOB, FOQ, MN, NDP

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4O26 \| pdb_00004o26	Download File View File

Crystal structure of the TRBD domain of TERT and the CR4/5 of TR

Huang, J., Wu, J., Lei, M.

(2014) Nat Struct Mol Biol 21: 507-512

Released	2014-05-07
Method	X-RAY DIFFRACTION 3.001 Å
Organisms	Oryzias latipes
Macromolecule	Telomerase reverse transcriptase (protein) Telomerase TR (nucleic acid)
Unique Ligands	SO4

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4QVX \| pdb_00004qvx	Download File View File

Discovery of a Potent and Selective BCL-XL Inhibitor That Demonstrates Thrombocytopenia and Inhibits Tumor Growth in Vivo

Park, C.H.

(2014) ACS Med Chem Lett 5: 1088-1093

Released	2015-07-22
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens
Macromolecule	Bcl-2-like protein 1 (protein)
Unique Ligands	3CQ

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5AFE \| pdb_00005afe	Download File View File

Medium Resolution structure of the C-terminal family 65 Carbohydrate Binding Module (CBM65B) of endoglucanase Cel5A from Eubacterium cellulosolvens with a bound xyloglucan heptasaccharide (XXXG)

Venditto, I., Fontes, C.M.G.A., Gilbert, H.J., Najmudin, S.

To be published

Released	2015-02-04
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	[Eubacterium] cellulosolvens
Macromolecule	ENDOGLUCANASE CEL5A (protein)
Unique Ligands	CIT
Unique branched monosaccharides	BGC, XYS

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5VKC \| pdb_00005vkc	Download File View File

Crystal structure of MCL-1 in complex with a BIM competitive inhibitor

Judge, R.A., Souers, A.J.

(2015) J Med Chem 58: 2180-2194

Released	2017-05-03
Method	X-RAY DIFFRACTION 2.31 Å
Organisms	Homo sapiens
Macromolecule	Induced myeloid leukemia cell differentiation protein Mcl-1 (protein)
Unique Ligands	9EA, ZN

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5XXE \| pdb_00005xxe	Download File View File

Crystal structure of Poz1 and Tpz1

Xue, J., Chen, H., Wu, J., Lei, M.

(2017) Cell Res 27: 1503-1520

Released	2017-12-20
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Schizosaccharomyces pombe 972h-
Macromolecule	Protection of telomeres protein poz1 (protein) Protection of telomeres protein tpz1 (protein)
Unique Ligands	SO4, ZN

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5XXF \| pdb_00005xxf	Download File View File

Crystal structure of Poz1, Tpz1 and Rap1

Xue, J., Chen, H., Wu, J., Lei, M.

(2017) Cell Res 27: 1503-1520

Released	2017-12-20
Method	X-RAY DIFFRACTION 3.1 Å
Organisms	Schizosaccharomyces pombe Schizosaccharomyces pombe 972h-
Macromolecule	Protection of telomeres protein poz1 (protein) Protection of telomeres protein tpz1 (protein) Rap1 (protein)
Unique Ligands	ZN

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5XYF \| pdb_00005xyf	Download File View File

Crystal structure of the human TIN2-TPP1-TRF2 telomeric complex

Hu, C., Chen, Y.

(2017) Cell Res 27: 1485-1502

Released	2017-12-13
Method	X-RAY DIFFRACTION 2.202 Å
Organisms	Homo sapiens
Macromolecule	Adrenocortical dysplasia protein homolog (protein) TERF1-interacting nuclear factor 2 (protein) Telomeric repeat-binding factor 2 (protein)

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5Y58 \| pdb_00005y58	Download File View File

Crystal structure of Ku70/80 and TLC1

Chen, H., Xue, J., Wu, J., Lei, M.

(2018) Cell 172: 331-343.e13

Released	2017-12-20
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Saccharomyces cerevisiae Saccharomyces cerevisiae S288C
Macromolecule	ATP-dependent DNA helicase II subunit 1 (protein) ATP-dependent DNA helicase II subunit 2 (protein) TLC1 (nucleic acid)

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5Y59 \| pdb_00005y59	Download File View File

Crystal structure of Ku80 and Sir4

Chen, H., Xue, J., Wu, J., Lei, M.

(2018) Cell 172: 331-343.e13

Released	2017-12-20
Method	X-RAY DIFFRACTION 2.402 Å
Organisms	Saccharomyces cerevisiae S288C Saccharomyces cerevisiae VL3
Macromolecule	ATP-dependent DNA helicase II subunit 2 (protein) Sir4p (protein)
Unique Ligands	SO4

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5Y5A \| pdb_00005y5a	Download File View File

Crystal structure of Est1 and Cdc13

Chen, H., Xue, J., Wu, J., Lei, M.

(2018) Cell 172: 331-343.e13

Released	2017-12-20
Method	X-RAY DIFFRACTION 2.206 Å
Organisms	Kluyveromyces lactis NRRL Y-1140
Macromolecule	KLLA0F20702p (protein) KLLA0F20922p (protein)

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6AC0 \| pdb_00006ac0	Download File View File

Crystal structure of TRADD death domain GlcNAcylated by EPEC effector NleB

Ding, J., Shao, F.

(2019) Mol Cell 74: 922

Released	2019-05-01
Method	X-RAY DIFFRACTION 1.449 Å
Organisms	Homo sapiens
Macromolecule	Tumor necrosis factor receptor type 1-associated DEATH domain protein (protein)
Unique Ligands	NAG

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6AC5 \| pdb_00006ac5	Download File View File

Crystal structure of RIPK1 death domain GlcNAcylated by EPEC effector NleB

Ding, J., Shao, F.

(2019) Mol Cell 74: 922

Released	2019-05-01
Method	X-RAY DIFFRACTION 1.451 Å
Organisms	Homo sapiens
Macromolecule	Receptor-interacting serine/threonine-protein kinase 1 (protein)
Unique Ligands	NAG, SO4

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6ACI \| pdb_00006aci	Download File View File

Crystal structure of EPEC effector NleB in complex with FADD death domain

Ding, J., Shao, F.

(2019) Mol Cell 74: 922

Released	2019-05-01
Method	X-RAY DIFFRACTION 1.87 Å
Organisms	Escherichia coli O127:H6 str. E2348/69 Homo sapiens
Macromolecule	FAS-associated death domain protein (protein) T3SS secreted effector NleB homolog (protein)
Unique Ligands	MN, UDP

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6B4L \| pdb_00006b4l	Download File View File

Crystal structure of MCL-1 in complex with a BIM competitive inhibitor

Judge, R.A., Souers, A.J.

(2015) J Med Chem 58: 2180-2194

Released	2017-10-04
Method	X-RAY DIFFRACTION 2.25 Å
Organisms	Homo sapiens
Macromolecule	Induced myeloid leukemia cell differentiation protein Mcl-1 (protein)
Unique Ligands	CJY

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6B4U \| pdb_00006b4u	Download File View File

Crystal structure of MCL-1 in complex with a BIM competitive inhibitor

Judge, R.A., Souers, A.J.

(2015) J Med Chem 58: 2180-2194

Released	2017-10-04
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Homo sapiens
Macromolecule	Induced myeloid leukemia cell differentiation protein Mcl-1 (protein)
Unique Ligands	CN7

1 to 25 of 118 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

2L7U | pdb_00002l7u

2MOV | pdb_00002mov

2YPJ | pdb_00002ypj

3EB7 | pdb_00003eb7

4AEK | pdb_00004aek

4AEM | pdb_00004aem

4AFD | pdb_00004afd

4AFM | pdb_00004afm

4BA6 | pdb_00004ba6

4GAE | pdb_00004gae

4O26 | pdb_00004o26

4QVX | pdb_00004qvx

5AFE | pdb_00005afe

5VKC | pdb_00005vkc

5XXE | pdb_00005xxe

5XXF | pdb_00005xxf

5XYF | pdb_00005xyf

5Y58 | pdb_00005y58

5Y59 | pdb_00005y59

5Y5A | pdb_00005y5a

6AC0 | pdb_00006ac0

6AC5 | pdb_00006ac5

6ACI | pdb_00006aci

6B4L | pdb_00006b4l

6B4U | pdb_00006b4u