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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Yan, X."

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Search Summary

This query matches 307 Structures.

Refinements

Structure Determination Methodology

experimental (307)

Scientific Name of Source Organism

	Homo sapiens (142)
	Mus musculus (18)
	synthetic construct (18)
	Severe acute respiratory syndrome coronavirus 2 (17)
	Coxsackievirus A16 (9)
	Rattus norvegicus (8)
	Streptomyces sp. CB03234 (8)
	Arabidopsis thaliana (7)
	Coxsackievirus A10 (6)
	Plasmodium falciparum 3D7 (6)

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Taxonomy

	Eukaryota (183)
	Bacteria (68)
	Riboviria (49)
	other sequences (18)
	Archaea (10)
	Monodnaviria (9)
	Adnaviria (6)
	Viruses incertae sedis (5)
	Duplodnaviria (2)
	Eukaryota (eukaryotes) (2)

More...

Experimental Method

	X-RAY DIFFRACTION (212)
	ELECTRON MICROSCOPY (89)
	SOLUTION NMR (6)

Polymer Entity Type

	Protein (307)
	DNA (7)
	RNA (6)
	NA-hybrid (2)

Refinement Resolution (Å)

	1.0 - 1.5 (16)
	1.5 - 2.0 (85)
	2.0 - 2.5 (53)
	2.5 - 3.0 (68)
	3.0 - 3.5 (46)
	3.5 - 4.0 (26)
	4.0 - 4.5 (5)
	> 4.5 (2)

Release Date

	1995 - 1999 (2)
	2000 - 2004 (1)
	2005 - 2009 (18)
	2010 - 2014 (64)
	2015 - 2019 (60)
	2020 - 2024 (149)
	2025 - 2029 (13)

Enzyme Classification Name

	Hydrolases (84)
	Transferases (57)
	Oxidoreductases (15)
	Ligases (18)
	Isomerases (4)
	Lyases (1)
	Translocases (2)

Membrane Protein Annotation

	PDBTM (28)
	mpstruc (23)
	MemProtMD (19)
	OPM (18)

Symmetry Type

	Asymmetric (156)
	Cyclic (105)
	Icosahedral (26)
	Dihedral (23)
	Octahedral (4)
	Tetrahedral (4)

SCOP Classification

	All alpha proteins (35)
	All beta proteins (17)
	Artifacts (16)
	Alpha and beta proteins (a/b) (18)
	Alpha and beta proteins (a+b) (12)
	Membrane and cell surface proteins and peptides (7)
	Low resolution protein structures (1)
	Small proteins (2)

AllSelected

1 to 25 of 307 Structures

Page 1 of 13

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1BR5 \| pdb_00001br5	Download File View File

RICIN A CHAIN (RECOMBINANT) COMPLEX WITH NEOPTERIN

Day, P., Yan, X., Hollis, T., Svinth, M., Monzingo, A.F., Milne, G.W.A., Robertus, J.D.

(1997) J Mol Biology 266: 1043-1049

Released	1998-09-02
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Ricinus communis
Macromolecule	PROTEIN (RICIN) (protein)
Unique Ligands	NEO

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1BR6 \| pdb_00001br6	Download File View File

RICIN A CHAIN (RECOMBINANT) COMPLEX WITH PTEROIC ACID

Hollis, T., Yan, X., Svinth, M., Day, P., Monzingo, A.F., Milne, G.W.A., Robertus, J.D.

(1997) J Mol Biology 266: 1043-1049

Released	1998-09-02
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Ricinus communis
Macromolecule	PROTEIN (RICIN) (protein)
Unique Ligands	PT1

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1M4X \| pdb_00001m4x	Download File View File

PBCV-1 virus capsid, quasi-atomic model

Nandhagopal, N., Simpson, A.A., Gurnon, J.R., Yan, X., Baker, T.S., Graves, M.V., Van Etten, J.L., Rossmann, M.G.

(2002) Proc Natl Acad Sci U S A 99: 14758-14763

Released	2002-12-04
Method	ELECTRON MICROSCOPY 28 Å
Organisms	Paramecium bursaria Chlorella virus 1
Macromolecule	PBCV-1 virus capsid (protein)

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2D68 \| pdb_00002d68	Download File View File

Structure of the N-terminal domain of FOP (FGFR1OP) protein

Mikolajka, A.

(2006) J Mol Biology 359: 863-875

Released	2006-05-16
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Homo sapiens
Macromolecule	FOP (protein)

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2IVY \| pdb_00002ivy	Download File View File

Crystal structure of hypothetical protein sso1404 from Sulfolobus solfataricus P2

Yan, X., Carter, L.G., Dorward, M., Liu, H., McMahon, S.A., Oke, M., Powers, H., White, M.F., Naismith, J.H.

(2010) J Struct Funct Genomics 11: 167

Released	2006-06-28
Method	X-RAY DIFFRACTION 1.4 Å
Organisms	Saccharolobus solfataricus P2
Macromolecule	HYPOTHETICAL PROTEIN SSO1404 (protein)

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2JG5 \| pdb_00002jg5	Download File View File

CRYSTAL STRUCTURE OF A PUTATIVE PHOSPHOFRUCTOKINASE FROM STAPHYLOCOCCUS AUREUS

Yan, X., Carter, L.G., Johnson, K.A., Liu, H., Dorward, M., McMahon, S.A., Oke, M., Powers, H., Coote, P.J., Naismith, J.H.

(2010) J Struct Funct Genomics 11: 167

Released	2007-02-27
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Staphylococcus aureus
Macromolecule	FRUCTOSE 1-PHOSPHATE KINASE (protein)

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2JG6 \| pdb_00002jg6	Download File View File

CRYSTAL STRUCTURE OF A 3-METHYLADENINE DNA GLYCOSYLASE I FROM STAPHYLOCOCCUS AUREUS

Yan, X., Carter, L.G., Liu, H., Dorward, M., McMahon, S.A., Johnson, K.A., Oke, M., Coote, P.J., Naismith, J.H.

(2010) J Struct Funct Genomics 11: 167

Released	2007-02-20
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Staphylococcus aureus
Macromolecule	DNA-3-METHYLADENINE GLYCOSIDASE (protein)
Unique Ligands	ZN

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2JOO \| pdb_00002joo	Download File View File

The NMR Solution Structure of Recombinant RGD-hirudin

Song, X., Mo, W., Liu, X., Yan, X., Song, H., Dai, L.

(2007) Biochem Biophys Res Commun 360: 103-108

Released	2008-03-18
Method	SOLUTION NMR
Organisms	Hirudo medicinalis
Macromolecule	Hirudin variant-1 (protein)

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2L5F \| pdb_00002l5f	Download File View File

Solution structure of the tandem WW domains from HYPA/FBP11

Jiang, Y., Hu, H.

To be published

Released	2011-05-11
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Pre-mRNA-processing factor 40 homolog A (protein)

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2R6M \| pdb_00002r6m	Download File View File

Crystal structure of rat CK2-beta subunit

Shen, Y.

(2009) Chin Sci Bull 54: 220-226

Released	2008-09-23
Method	X-RAY DIFFRACTION 3.1 Å
Organisms	Rattus norvegicus
Macromolecule	Casein kinase II subunit beta (protein)
Unique Ligands	ZN

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2R7I \| pdb_00002r7i	Download File View File

Crystal structure of catalytic subunit of protein kinase CK2

Shen, Y.

(2009) Chin Sci Bull 54: 220-226

Released	2008-09-23
Method	X-RAY DIFFRACTION 3.003 Å
Organisms	Rattus norvegicus
Macromolecule	Casein kinase II subunit alpha (protein)
Unique Ligands	SO4

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2VW8 \| pdb_00002vw8	Download File View File

Crystal Structure of Quinolone signal response protein pqsE from Pseudomonas aeruginosa

Carter, L.G., Johnson, K.A., Liu, H., Mcmahon, S.A., Oke, M., Naismith, J.H., White, M.F.

(2010) J Struct Funct Genomics 11: 167

Released	2010-07-14
Method	X-RAY DIFFRACTION 1.45 Å
Organisms	Pseudomonas aeruginosa PAO1
Macromolecule	PA1000 (protein)
Unique Ligands	CAC, EDO, FE2

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2VXZ \| pdb_00002vxz	Download File View File

Crystal Structure of hypothetical protein PyrSV_gp04 from Pyrobaculum spherical virus

Carter, L.G., Johnson, K.A., Liu, H., Mcmahon, S.A., Oke, M., Naismith, J.H., White, M.F.

(2010) J Struct Funct Genomics 11: 167

Released	2009-11-17
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Pyrobaculum spherical virus
Macromolecule	PYRSV_GP04 (protein)
Unique Ligands	CL, GOL

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2WJ9 \| pdb_00002wj9	Download File View File

ArdB

Weikart, N.D., Roberts, G., Johnson, K.A., Oke, M., Cooper, L.P., McMahon, S.A., White, J.H., Liu, H., Carter, L.G., Walkinshaw, M.D., Blakely, G.W., Naismith, J.H., Dryden, D.T.F.

(2010) J Struct Funct Genomics 11: 167

Released	2010-08-18
Method	X-RAY DIFFRACTION 1.62 Å
Organisms	Escherichia coli CFT073
Macromolecule	INTERGENIC-REGION PROTEIN (protein)
Unique Ligands	BME, CL, MPD, SO4

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2X0O \| pdb_00002x0o	Download File View File

Apo structure of the Alcaligin biosynthesis protein C (AlcC) from Bordetella bronchiseptica

Johnson, K.A., Schmelz, S., Kadi, N., Mcmahon, S.A., Oke, M., Liu, H., Carter, L.G., White, M.F., Challis, G.L., Naismith, J.H.

(2010) J Struct Funct Genomics 11: 167

Released	2010-07-28
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Bordetella bronchiseptica
Macromolecule	ALCALIGIN BIOSYNTHESIS PROTEIN (protein)
Unique Ligands	SO4

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2X3D \| pdb_00002x3d	Download File View File

Crystal Structure of SSo6206 from Sulfolobus solfataricus P2

Oke, M., Carter, L.G., Johnson, K.A., Liu, H., McMahon, S.A., McEwan, A.R., White, M.F., Naismith, J.H.

(2010) J Struct Funct Genomics 11: 167-180

Released	2010-07-28
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Saccharolobus solfataricus P2
Macromolecule	SSO6206 (protein)

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2X3E \| pdb_00002x3e	Download File View File

Crystal structure of 3-oxoacyl-(acyl carrier protein) synthase III, FabH from Pseudomonas aeruginosa PAO1

Oke, M., Carter, L.G., Johnson, K.A., Liu, H., Mcmahon, S.A., White, M.F., Naismith, J.H.

(2010) J Struct Funct Genomics 11: 167

Released	2010-07-28
Method	X-RAY DIFFRACTION 1.81 Å
Organisms	Pseudomonas aeruginosa
Macromolecule	3-OXOACYL-[ACYL-CARRIER-PROTEIN] SYNTHASE 3 (protein)

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2X3F \| pdb_00002x3f	Download File View File

Crystal Structure of the Methicillin-Resistant Staphylococcus aureus Sar2676, a Pantothenate Synthetase.

Oke, M., Carter, L.G., Johnson, K.A., Liu, H., Mcmahon, S.A., White, M.F., Naismith, J.H.

(2010) J Struct Funct Genomics 11: 167

Released	2010-07-21
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Staphylococcus aureus subsp. aureus MRSA252
Macromolecule	PANTHOTHENATE SYNTHETASE (protein)
Unique Ligands	APC, SO4

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2X3G \| pdb_00002x3g	Download File View File

Crystal Structure of the hypothetical protein ORF119 from Sulfolobus islandicus rod-shaped virus 1

Oke, M., Carter, L.G., Johnson, K.A., Liu, H., Mcmahon, S.A., White, M.F., Naismith, J.H.

(2010) J Struct Funct Genomics 11: 167

Released	2010-07-21
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Sulfolobus islandicus rudivirus 1 variant XX
Macromolecule	SIRV1 HYPOTHETICAL PROTEIN ORF119 (protein)

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2X3L \| pdb_00002x3l	Download File View File

Crystal Structure of the Orn_Lys_Arg decarboxylase family protein SAR0482 from Methicillin-resistant Staphylococcus aureus

Oke, M., Carter, L.G., Johnson, K.A., Liu, H., Mcmahon, S.A., White, M.F., Naismith, J.H.

(2010) J Struct Funct Genomics 11: 167

Released	2010-07-21
Method	X-RAY DIFFRACTION 2 Å
Organisms	Staphylococcus aureus
Macromolecule	ORN/LYS/ARG DECARBOXYLASE FAMILY PROTEIN (protein)
Unique Ligands	EDO, PLP, SM

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2X3M \| pdb_00002x3m	Download File View File

Crystal Structure of Hypothetical Protein ORF239 from Pyrobaculum Spherical Virus

Oke, M., Carter, L.G., Johnson, K.A., Liu, H., Mcmahon, S.A., White, M.F., Naismith, J.H.

(2010) J Struct Funct Genomics 11: 167

Released	2011-02-16
Method	X-RAY DIFFRACTION 1.45 Å
Organisms	Pyrobaculum spherical virus
Macromolecule	HYPOTHETICAL PROTEIN ORF239 (protein)

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2X3N \| pdb_00002x3n	Download File View File

Crystal structure of pqsL, a probable FAD-dependent monooxygenase from Pseudomonas aeruginosa

Oke, M., Carter, L.G., Johnson, K.A., Liu, H., Mcmahon, S.A., White, M.F., Naismith, J.H.

(2010) J Struct Funct Genomics 11: 167

Released	2010-07-21
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Pseudomonas aeruginosa
Macromolecule	PROBABLE FAD-DEPENDENT MONOOXYGENASE (protein)
Unique Ligands	FAD

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2X3O \| pdb_00002x3o	Download File View File

Crystal Structure of the Hypothetical Protein PA0856 from Pseudomonas aeruginosa

Oke, M., Carter, L.G., Johnson, K.A., Liu, H., Mcmahon, S.A., White, M.F., Naismith, J.H.

(2010) J Struct Funct Genomics 11: 167

Released	2010-07-21
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Pseudomonas aeruginosa
Macromolecule	HYPOTHETICAL PROTEIN PA0856 (protein)
Unique Ligands	CL, GOL