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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Yin, Q."

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Search Summary

This query matches 31 Structures.

Refinements

Structure Determination Methodology

experimental (31)

Scientific Name of Source Organism

	Homo sapiens (21)
	Mus musculus (8)
	Severe acute respiratory syndrome coronavirus 2 (3)
	Aequorea victoria (1)
	Drosophila melanogaster (1)
	Escherichia coli (1)
	Human herpesvirus 8 strain GK18 (1)
	Piscinibacter sakaiensis (1)
	Rhodopseudomonas palustris (1)

Taxonomy

	Eukaryota (29)
	Bacteria (3)
	Riboviria (3)
	Duplodnaviria (1)

Experimental Method

	X-RAY DIFFRACTION (24)
	ELECTRON MICROSCOPY (7)

Polymer Entity Type

	Protein (31)
	DNA (2)

Refinement Resolution (Å)

	1.5 - 2.0 (7)
	2.0 - 2.5 (7)
	2.5 - 3.0 (7)
	3.0 - 3.5 (4)
	3.5 - 4.0 (2)
	> 4.5 (4)

Release Date

	2005 - 2009 (4)
	2010 - 2014 (9)
	2015 - 2019 (5)
	2020 - 2024 (13)

Enzyme Classification Name

	Transferases (5)
	Hydrolases (5)
	Ligases (2)

Symmetry Type

	Asymmetric (14)
	Cyclic (13)
	Helical (4)
	Dihedral (1)

SCOP Classification

	Alpha and beta proteins (a+b) (5)
	All beta proteins (2)
	All alpha proteins (1)
	Alpha and beta proteins (a/b) (1)
	Artifacts (1)

AllSelected

1 to 25 of 31 Structures

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3HCS \| pdb_00003hcs	Download File View File

Crystal structure of the N-terminal domain of TRAF6

Yin, Q., Lin, S.-C., Lamothe, B., Lu, M., Lo, Y.-C., Hura, G., Zheng, L., Rich, R.L., Campos, A.D., Myszka, D.G., Lenardo, M.J., Darnay, B.G., Wu, H.

(2009) Nat Struct Mol Biol 16: 658-666

Released	2009-05-26
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Homo sapiens
Macromolecule	TNF receptor-associated factor 6 (protein)
Unique Ligands	ZN

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3HCT \| pdb_00003hct	Download File View File

Crystal structure of TRAF6 in complex with Ubc13 in the P1 space group

Yin, Q., Lin, S.-C., Lamothe, B., Lu, M., Lo, Y.-C., Hura, G., Zheng, L., Rich, R.L., Campos, A.D., Myszka, D.G., Lenardo, M.J., Darnay, B.G., Wu, H.

(2009) Nat Struct Mol Biol 16: 658-666

Released	2009-05-26
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens
Macromolecule	TNF receptor-associated factor 6 (protein) Ubiquitin-conjugating enzyme E2 N (protein)
Unique Ligands	ZN

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3HCU \| pdb_00003hcu	Download File View File

Crystal structure of TRAF6 in complex with Ubc13 in the C2 space group

Yin, Q., Lin, S.-C., Lamothe, B., Lu, M., Lo, Y.-C., Hura, G., Zheng, L., Rich, R.L., Campos, A.D., Myszka, D.G., Lenardo, M.J., Darnay, B.G., Wu, H.

(2009) Nat Struct Mol Biol 16: 658-666

Released	2009-05-26
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Homo sapiens
Macromolecule	TNF receptor-associated factor 6 (protein) Ubiquitin-conjugating enzyme E2 N (protein)
Unique Ligands	ZN

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3J63 \| pdb_00003j63	Download File View File

Unified assembly mechanism of ASC-dependent inflammasomes

Lu, A., Magupalli, V.G., Ruan, J., Yin, Q., Atianand, M.K., Vos, M., Schroder, G.F., Fitzgerald, K.A., Wu, H., Egelman, E.H.

(2014) Cell 156: 1193-1206

Released	2014-03-26
Method	ELECTRON MICROSCOPY 3.8 Å
Organisms	Homo sapiens
Macromolecule	Apoptosis-associated speck-like protein containing a CARD (protein)

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3JBL \| pdb_00003jbl	Download File View File

Cryo-EM Structure of the Activated NAIP2/NLRC4 Inflammasome Reveals Nucleated Polymerization

Zhang, L., Chen, S., Ruan, J., Wu, J., Tong, A.B., Yin, Q., Li, Y., David, L., Lu, A., Wang, W.L., Marks, C., Ouyang, Q., Zhang, X., Mao, Y., Wu, H.

(2015) Science 350: 404-409

Released	2015-10-21
Method	ELECTRON MICROSCOPY 4.7 Å
Organisms	Mus musculus
Macromolecule	NLR family CARD domain-containing protein 4 (protein)

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3KNV \| pdb_00003knv	Download File View File

Crystal structure of the RING and first zinc finger domains of TRAF2

Yin, Q., Wu, H.

(2009) Biochemistry 48: 10558-10567

Released	2009-11-24
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Homo sapiens
Macromolecule	TNF receptor-associated factor 2 (protein)
Unique Ligands	ZN

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3OQ9 \| pdb_00003oq9	Download File View File

Structure of the FAS/FADD death domain assembly

Kabaleeswaran, V., Wu, H.

(2010) Nat Struct Mol Biol 17: 1324-1329

Released	2010-10-13
Method	X-RAY DIFFRACTION 6.8 Å
Organisms	Homo sapiens Mus musculus
Macromolecule	Protein FADD (protein) Tumor necrosis factor receptor superfamily member 6 (protein)

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3RIU \| pdb_00003riu	Download File View File

Crystal structure of Drosophila hexameric C3PO formed by truncated Translin and Trax

Tian, Y., Simanshu, D.K., Patel, D.J.

(2011) Nat Struct Mol Biol 18: 658-664

Released	2011-05-11
Method	X-RAY DIFFRACTION 3.4 Å
Organisms	Drosophila melanogaster
Macromolecule	Translin (protein) Translin associated factor X, isoform B (protein)

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4F9E \| pdb_00004f9e	Download File View File

Cyclic di-GMP Sensing via the Innate Immune Signaling Protein STING

Kabaleeswaran, V., Wu, H.

(2012) Mol Cell 46: 735-745

Released	2012-07-25
Method	X-RAY DIFFRACTION 2.75 Å
Organisms	Homo sapiens
Macromolecule	Transmembrane protein 173 (protein)

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4F9G \| pdb_00004f9g	Download File View File

Crystal structure of STING complex with Cyclic di-GMP.

Kabaleeswaran, V., Wu, H.

(2012) Mol Cell 46: 735-745

Released	2012-07-25
Method	X-RAY DIFFRACTION 2.95 Å
Organisms	Homo sapiens
Macromolecule	Transmembrane protein 173 (protein)
Unique Ligands	C2E

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4L5Q \| pdb_00004l5q	Download File View File

Crystal structure of p202 HIN1

Yin, Q., Tian, Y., Wu, H.

(2013) Cell Rep 4: 327-339

Released	2013-07-31
Method	X-RAY DIFFRACTION 2.23 Å
Organisms	Mus musculus
Macromolecule	Interferon-activable protein 202 (protein)

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4L5R \| pdb_00004l5r	Download File View File

Crystal structure of p202 HIN1 in complex with 20-mer dsDNA

Yin, Q., Tian, Y., Wu, H.

(2013) Cell Rep 4: 327-339

Released	2013-07-31
Method	X-RAY DIFFRACTION 1.873 Å
Organisms	Mus musculus
Macromolecule	Interferon-activable protein 202 (protein) 20-mer DNA (nucleic acid)
Unique Ligands	NA

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4L5S \| pdb_00004l5s	Download File View File

p202 HIN1 in complex with 12-mer dsDNA

Yin, Q., Tian, Y., Wu, H.

(2013) Cell Rep 4: 327-339

Released	2013-08-14
Method	X-RAY DIFFRACTION 2.94 Å
Organisms	Mus musculus
Macromolecule	Interferon-activable protein 202 (protein) 12-mer DNA (nucleic acid)
Unique Ligands	SO4

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4L5T \| pdb_00004l5t	Download File View File

Crystal structure of the tetrameric p202 HIN2

Yin, Q., Tian, Y., Wu, H.

(2013) Cell Rep 4: 327-339

Released	2013-07-31
Method	X-RAY DIFFRACTION 3.405 Å
Organisms	Mus musculus
Macromolecule	Interferon-activable protein 202 (protein)

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5FNA \| pdb_00005fna	Download File View File

Cryo-EM reconstruction of caspase-1 CARD

Li, Y., Lu, A., Schmidt, F.I., Yin, Q., Chen, S., Fu, T.M., Tong, A.B., Ploegh, H.L., Mao, Y., Wu, H.

(2016) Nat Struct Mol Biol 23: 416

Released	2016-03-30
Method	ELECTRON MICROSCOPY 4.8 Å
Organisms	Homo sapiens
Macromolecule	Caspase-1 (protein)

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6FWB \| pdb_00006fwb	Download File View File

Crystal structure of Mat2A at 1.79 Angstron resolution

Zhou, A., Wei, Z., Bai, J., Wang, H.

(2019) EBioMedicine 39: 575-590

Released	2019-03-27
Method	X-RAY DIFFRACTION 1.79 Å
Organisms	Homo sapiens
Macromolecule	S-adenosylmethionine synthase isoform type-2 (protein)
Unique Ligands	GOL, NA, PG4, SO4

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6MB2 \| pdb_00006mb2	Download File View File

Cryo-EM structure of the PYD filament of AIM2

Lu, A., Li, Y., Wu, H.

(2015) Cell Discov 1:

Released	2018-09-05
Method	ELECTRON MICROSCOPY 5 Å
Organisms	Aequorea victoria Homo sapiens
Macromolecule	Green fluorescent protein (protein) Interferon-inducible protein AIM2 (protein)

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6OE9 \| pdb_00006oe9	Download File View File

Crystal structure of p204 HIN1 domain

Tian, Y., Yin, Q.

(2019) Acta Crystallogr F Struct Biol Commun 75: 455-460

Released	2019-07-10
Method	X-RAY DIFFRACTION 1.94 Å
Organisms	Mus musculus
Macromolecule	Interferon-activable protein 204 (protein)
Unique Ligands	GOL, SO4

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6VKJ \| pdb_00006vkj	Download File View File

Crystal structure of the G domain of human guanylate-binding protein 2 (hGBP2) in complex with GDP

Roy, S., Wang, B., Tian, Y., Yin, Q.

To be published

Released	2021-01-27
Method	X-RAY DIFFRACTION 2.105 Å
Organisms	Homo sapiens
Macromolecule	Guanylate-binding protein 2 (protein)
Unique Ligands	GDP

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7BFZ \| pdb_00007bfz	Download File View File

X-ray structure of human prostate-specific membrane antigen(PSMA) in complex with a inhibitor Glu-490

Rakhimbekova, A., Motlova, L., Barinka, C.

(2021) Nat Commun 12: 5460-5460

Released	2021-08-18
Method	X-RAY DIFFRACTION 1.73 Å
Organisms	Homo sapiens
Macromolecule	Glutamate carboxypeptidase 2 (protein)
Unique Ligands	CA, CL, EDO, NA, NAG, PEG, TKZ, ZN
Unique branched monosaccharides	BMA, FUC, MAN, NAG

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7M1S \| pdb_00007m1s	Download File View File

Crystal structure of human guanylate-binding protein 2 (hGBP2) K51A mutant

Roy, S., Wang, B., Tian, Y., Yin, Q.

To be published

Released	2022-04-27
Method	X-RAY DIFFRACTION 2.91 Å
Organisms	Homo sapiens
Macromolecule	Guanylate-binding protein 2 (protein)
Unique Ligands	PO4

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7TDQ \| pdb_00007tdq	Download File View File

Crystal structure of KSHV KicGAS/ORF52

Yin, Q., Tian, Y., Bhowmik, D., Zhu, F.

(2022) Proc Natl Acad Sci U S A 119: e2200285119-e2200285119

Released	2022-11-02
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Human herpesvirus 8 strain GK18
Macromolecule	Tegument protein ORF52 (protein)

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7TWD \| pdb_00007twd	Download File View File

Structure of AAGAB C-terminal dimerization domain

Tian, Y., Yin, Q.

(2023) Proc Natl Acad Sci U S A 120: e2205199120-e2205199120

Released	2023-01-18
Method	X-RAY DIFFRACTION 2.11 Å
Organisms	Homo sapiens
Macromolecule	Alpha- and gamma-adaptin-binding protein p34 (protein)
Unique Ligands	PO4

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7XMX \| pdb_00007xmx	Download File View File

Cryo-EM structure of SARS-CoV-2 spike glycoprotein in complex with three F61 Fab

Wang, X., Li, X.

(2022) Cell Discov 8: 87-87

Released	2022-11-23
Method	ELECTRON MICROSCOPY 3.62 Å
Organisms	Homo sapiens Severe acute respiratory syndrome coronavirus 2
Macromolecule	F61 heavy chain (protein) F61 light chain (protein) Spike glycoprotein (protein)
Unique Ligands	NAG

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7XMZ \| pdb_00007xmz	Download File View File

Cryo-EM structure of SARS-CoV-2 spike glycoprotein in complex with three D2 Fab

Wang, X., Li, X.

(2022) Cell Discov 8: 87-87

Released	2022-11-23
Method	ELECTRON MICROSCOPY 3.25 Å
Organisms	Homo sapiens Severe acute respiratory syndrome coronavirus 2
Macromolecule	D2 heavy chain (protein) D2 light chain (protein) Spike glycoprotein (protein)
Unique Ligands	NAG

1 to 25 of 31 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

3HCS | pdb_00003hcs

3HCT | pdb_00003hct

3HCU | pdb_00003hcu

3J63 | pdb_00003j63

3JBL | pdb_00003jbl

3KNV | pdb_00003knv

3OQ9 | pdb_00003oq9

3RIU | pdb_00003riu

4F9E | pdb_00004f9e

4F9G | pdb_00004f9g

4L5Q | pdb_00004l5q

4L5R | pdb_00004l5r

4L5S | pdb_00004l5s

4L5T | pdb_00004l5t

5FNA | pdb_00005fna

6FWB | pdb_00006fwb

6MB2 | pdb_00006mb2

6OE9 | pdb_00006oe9

6VKJ | pdb_00006vkj

7BFZ | pdb_00007bfz

7M1S | pdb_00007m1s

7TDQ | pdb_00007tdq

7TWD | pdb_00007twd

7XMX | pdb_00007xmx

7XMZ | pdb_00007xmz