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233,249 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Young, J.H."

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Search Summary

This query matches 48 Structures.

Refinements

Structure Determination Methodology

experimental (48)

Scientific Name of Source Organism

	Homo sapiens (34)
	Severe acute respiratory syndrome coronavirus 2 (8)
	Bos taurus (6)
	Mus musculus (3)
	Chlamydomonas reinhardtii (2)
	Rhizobium tropici CIAT 899 (2)
	Alphavirus M1 (1)
	Leiurus hebraeus (1)
	Rhizobium tropici (1)
	Streptomyces lividans (1)

Taxonomy

	Eukaryota (43)
	Riboviria (9)
	Bacteria (4)
	Eukaryota (eukaryotes) (1)

Experimental Method

	X-RAY DIFFRACTION (24)
	ELECTRON MICROSCOPY (22)
	SOLUTION NMR (2)

Polymer Entity Type

Protein (48)

Refinement Resolution (Å)

	1.5 - 2.0 (7)
	2.0 - 2.5 (7)
	2.5 - 3.0 (13)
	3.0 - 3.5 (8)
	3.5 - 4.0 (4)
	4.0 - 4.5 (3)
	> 4.5 (4)

Release Date

	2005 - 2009 (3)
	2010 - 2014 (6)
	2015 - 2019 (11)
	2020 - 2024 (28)

Enzyme Classification Name

	Translocases (6)
	Transferases (13)
	Hydrolases (11)
	Oxidoreductases (2)

Membrane Protein Annotation

	mpstruc (10)
	OPM (11)
	PDBTM (8)
	MemProtMD (3)

Symmetry Type

	Asymmetric (32)
	Cyclic (18)
	Dihedral (1)
	Icosahedral (1)

SCOP Classification

	All beta proteins (5)
	Membrane and cell surface proteins and peptides (4)
	Artifacts (4)
	Alpha and beta proteins (a+b) (3)
	Small proteins (2)
	Alpha and beta proteins (a/b) (1)
	Peptides (1)

AllSelected

1 to 25 of 48 Structures

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2A9H \| pdb_00002a9h	Download File View File

NMR structural studies of a potassium channel / charybdotoxin complex

Yu, L., Sun, C., Song, D., Shen, J., Xu, N., Gunasekera, A., Hajduk, P.J., Olejniczak, E.T.

(2005) Biochemistry 44: 15834-15841

Released	2006-01-10
Method	SOLUTION NMR
Organisms	Leiurus hebraeus Streptomyces lividans
Macromolecule	Voltage-gated potassium channel (protein) charybdotoxin (protein)

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2JOD \| pdb_00002jod	Download File View File

Pac1-Rshort N-terminal EC domain Pacap(6-38) complex

Olejniczak, E.T., Sun, C., Song, D., Davis-Taber, R.A., Barrett, L.W., Scott, V.E., Richardson, P.L., Pereda-lopez, A., Uchic, M.E., Solomon, L.R., Lake, M.R., Walter, K.A., Hajduk, P.J.

(2007) Proc Natl Acad Sci U S A 104: 7875-7880

Released	2007-05-22
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Pituitary adenylate cyclase-activating polypeptide (protein) Pituitary adenylate cyclase-activating polypeptide type I receptor (protein)

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3BD9 \| pdb_00003bd9	Download File View File

human 3-O-sulfotransferase isoform 5 with bound PAP

Xu, D., Moon, A.F., Song, D., Liu, J., Pedersen, L.C.

(2008) Nat Chem Biol 4: 200-202

Released	2008-01-29
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Homo sapiens
Macromolecule	Heparan sulfate glucosamine 3-O-sulfotransferase 5 (protein)
Unique Ligands	A3P

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3NEW \| pdb_00003new	Download File View File

p38-alpha complexed with Compound 10

Goedken, E.R., Comess, K.M., Sun, C., Argiriadi, M., Jia, Y., Quinn, C.M., Banach, D.L., Marcotte, D., Borhani, D.

(2011) ACS Chem Biol 6: 234-244

Released	2010-12-01
Method	X-RAY DIFFRACTION 2.51 Å
Organisms	Homo sapiens
Macromolecule	Mitogen-activated protein kinase 14 (protein)
Unique Ligands	3NE

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3O17 \| pdb_00003o17	Download File View File

Crystal Structure of JNK1-alpha1 isoform

Abad-Zapatero, C.

To be published

Released	2011-01-12
Method	X-RAY DIFFRACTION 3 Å
Organisms	Homo sapiens Mus musculus
Macromolecule	C-Jun-amino-terminal kinase-interacting protein 1, JIP1, 10MER PEPTIDE (protein) Mitogen-activated protein kinase 8 (protein)
Unique Ligands	SO4

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3O2M \| pdb_00003o2m	Download File View File

Crystal Structure of JNK1-alpha1 isoform complex with a biaryl tetrazol (A-82118)

Abad-Zapatero, C.

(2011) ACS Chem Biol 6: 234-244

Released	2011-01-12
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Homo sapiens Mus musculus
Macromolecule	C-Jun-amino-terminal kinase-interacting protein 1, JIP1, 10MER PEPTIDE (protein) Mitogen-activated protein kinase 8 (protein)
Unique Ligands	46A, SO4

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4IM8 \| pdb_00004im8	Download File View File

low resolution crystal structure of mouse RAGE

Xu, D., Young, J.H., Krahn, J.M., Song, D., Corbett, K.D., Chazin, W.J., Pedersen, L.C., Esko, J.D.

(2013) ACS Chem Biol 8: 1611-1620

Released	2013-08-14
Method	X-RAY DIFFRACTION 3.503 Å
Organisms	Mus musculus
Macromolecule	Advanced glycation end-products receptor (protein)

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4OQ5 \| pdb_00004oq5	Download File View File

Crystal Structure of Human MCL-1 Bound to Inhibitor 4-(4-methylnaphthalen-1-yl)-2-{[(4-phenoxyphenyl)sulfonyl]amino}benzoic acid

Petros, A.M., Swann, S.L., Song, D., Swinger, K., Park, C., Zhang, H., Wendt, M.D., Kunzer, A.R., Souers, A.J., Sun, C.

(2014) Bioorg Med Chem Lett 24: 1484-1488

Released	2014-03-12
Method	X-RAY DIFFRACTION 2.86 Å
Organisms	Homo sapiens
Macromolecule	Induced myeloid leukemia cell differentiation protein Mcl-1 (protein)
Unique Ligands	2UU

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4OQ6 \| pdb_00004oq6	Download File View File

Crystal Structure of Human MCL-1 Bound to Inhibitor 4-hydroxy-4'-propylbiphenyl-3-carboxylic acid

Petros, A.M., Swann, S.L., Song, D., Swinger, K., Park, C., Zhang, H., Wendt, M.D., Kunzer, A.R., Souers, A.J., Sun, C.

(2014) Bioorg Med Chem Lett 24: 1484-1488

Released	2014-03-12
Method	X-RAY DIFFRACTION 1.81 Å
Organisms	Homo sapiens
Macromolecule	Induced myeloid leukemia cell differentiation protein Mcl-1 (protein)
Unique Ligands	2UV

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6KAC \| pdb_00006kac	Download File View File

Cryo-EM structure of the C2S2-type PSII-LHCII supercomplex from Chlamydomonas reihardtii

Sheng, X., Li, A.J., Song, D.F., Liu, Z.F.

(2019) Nat Plants 5: 1320-1330

Released	2019-10-23
Method	ELECTRON MICROSCOPY 2.7 Å
Organisms	Chlamydomonas reinhardtii
Macromolecule	Unique protein chains: 28
Unique Ligands	BCR, BCT, CHL, CL, CLA, DGD, FE2, HEM, LHG, LMG, LMU, LUT, NEX, OEX, PHO, PL9, SQD, XAT

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6KAD \| pdb_00006kad	Download File View File

Cryo-EM structure of the C2S2M2L2-type PSII-LHCII supercomplex from Chlamydomonas reihardtii

Sheng, X., Watanabe, A., Li, A.J., Kim, E., Song, C., Murata, K., Song, D.F., Minagawa, J., Liu, Z.F.

(2019) Nat Plants 5: 1320-1330

Released	2019-10-23
Method	ELECTRON MICROSCOPY 3.4 Å
Organisms	Chlamydomonas reinhardtii
Macromolecule	Unique protein chains: 23
Unique Ligands	BCR, BCT, CHL, CL, CLA, DGD, FE2, HEM, LHG, LMG, LUT, NEX, OEX, PHO, PL9, SQD, XAT

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6LV0 \| pdb_00006lv0	Download File View File

Crystal structure of the soluble domain of the multiple peptide resistance factor (MprF) from Rhizobium tropici

Jiao, H.Z., Song, D.F., Liu, Z.F.

(2021) Nat Commun 12: 2927-2927

Released	2021-02-03
Method	X-RAY DIFFRACTION 1.998 Å
Organisms	Rhizobium tropici CIAT 899
Macromolecule	Low pH-inducible protein LpiA (protein)

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6LVF \| pdb_00006lvf	Download File View File

Cryo-EM structure of the multiple peptide resistance factor (MprF) loaded with one lysyl-phosphatidylglycerol molecule

Song, D.F., Jiao, H.Z., Liu, Z.F.

(2021) Nat Commun 12: 2927-2927

Released	2021-02-03
Method	ELECTRON MICROSCOPY 3.7 Å
Organisms	Rhizobium tropici CIAT 899
Macromolecule	Low pH-inducible protein LpiA (protein)
Unique Ligands	EV9, LHG, PGT

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6MBJ \| pdb_00006mbj	Download File View File

SETD3, a Histidine Methyltransferase, in Complex with an Actin Peptide and SAH, P21 Crystal Form

Horton, J.R., Dai, S., Cheng, X.

(2019) Nature 565: 372-376

Released	2018-12-19
Method	X-RAY DIFFRACTION 1.78 Å
Organisms	Homo sapiens
Macromolecule	Actin Peptide (protein) Histone-lysine N-methyltransferase setd3 (protein)
Unique Ligands	ACT, EDO, GOL, SAH

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6MBK \| pdb_00006mbk	Download File View File

SETD3, a Histidine Methyltransferase, in Complex with an Actin Peptide and SAH, First P212121 Crystal Form

Horton, J.R., Dai, S., Cheng, X.

(2019) Nature 565: 372-376

Released	2018-12-19
Method	X-RAY DIFFRACTION 1.69 Å
Organisms	Homo sapiens
Macromolecule	Actin peptide (protein) Histone-lysine N-methyltransferase setd3 (protein)
Unique Ligands	EDO, GOL, SAH, SO4

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6MBL \| pdb_00006mbl	Download File View File

SETD3, a Histidine Methyltransferase, in Complex with an Actin Peptide and SAH, Second P212121 Crystal Form

Horton, J.R., Dai, S., Cheng, X.

(2019) Nature 565: 372-376

Released	2018-12-19
Method	X-RAY DIFFRACTION 2.197 Å
Organisms	Homo sapiens
Macromolecule	Actin Peptide (protein) Histone-lysine N-methyltransferase setd3 (protein)
Unique Ligands	EDO, SAH

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6OX0 \| pdb_00006ox0	Download File View File

SETD3 in Complex with an Actin Peptide with Sinefungin Replacing SAH as Cofactor

Horton, J.R., Dai, S., Cheng, X.

(2019) Nat Commun 10: 3541-3541

Released	2019-08-21
Method	X-RAY DIFFRACTION 1.755 Å
Organisms	Homo sapiens
Macromolecule	Actin Peptide (protein) Histone-lysine N-methyltransferase setd3 (protein)
Unique Ligands	EDO, SFG

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6OX1 \| pdb_00006ox1	Download File View File

SETD3 in Complex with an Actin Peptide with Target Histidine Partially Methylated

Horton, J.R., Dai, S., Cheng, X.

(2019) Nat Commun 10: 3541-3541

Released	2019-08-21
Method	X-RAY DIFFRACTION 1.949 Å
Organisms	Homo sapiens
Macromolecule	Actin, cytoplasmic 1 (protein) Histone-lysine N-methyltransferase setd3 (protein)
Unique Ligands	EDO, GOL, SAH

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6OX2 \| pdb_00006ox2	Download File View File

SETD3in Complex with an Actin Peptide with the Target Histidine Fully Methylated

Horton, J.R., Dai, S., Cheng, X.

(2019) Nat Commun 10: 3541-3541

Released	2019-08-21
Method	X-RAY DIFFRACTION 2.089 Å
Organisms	Homo sapiens
Macromolecule	Actin Peptide (protein) Histone-lysine N-methyltransferase setd3 (protein)
Unique Ligands	EDO, GOL, SAH

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6OX3 \| pdb_00006ox3	Download File View File

SETD3 in Complex with an Actin Peptide with His73 Replaced with Lysine

Horton, J.R., Dai, S., Cheng, X.

(2019) Nat Commun 10: 3541-3541

Released	2019-08-21
Method	X-RAY DIFFRACTION 1.785 Å
Organisms	Homo sapiens
Macromolecule	Actin Peptide (protein) Histone-lysine N-methyltransferase setd3 (protein)
Unique Ligands	ACT, EDO, GOL, PGE, SAH

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6OX4 \| pdb_00006ox4	Download File View File

A SETD3 Mutant (N255A) in Complex with an Actin Peptide

Horton, J.R., Dai, S., Cheng, X.

(2019) Nat Commun 10: 3541-3541

Released	2019-08-21
Method	X-RAY DIFFRACTION 2.294 Å
Organisms	Homo sapiens
Macromolecule	Actin Peptide (protein) Actin-histidine N-methyltransferase (protein)
Unique Ligands	ACT, EDO, GOL, SAH

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6OX5 \| pdb_00006ox5	Download File View File

A SETD3 Mutant (N255A) in Complex with an Actin Peptide with His73 Replaced with Lysine

Horton, J.R., Dai, S., Cheng, X.

(2019) Nat Commun 10: 3541-3541

Released	2019-08-21
Method	X-RAY DIFFRACTION 2.098 Å
Organisms	Homo sapiens
Macromolecule	Actin Peptide (protein) Actin-histidine N-methyltransferase (protein)
Unique Ligands	EDO, SAH