RCSB PDB: Search

Warning You are using a web browser that we do not support. Our website will not work properly. Please update to a newer version or download a new web browser, such as Chrome or Firefox.

Help

Help

RCSB PDB

Deposit
- PDBx/mmCIF file
- pdb_extract
- SF-Tool
- Ligand Expo
- MAXIT
- Validation Server
- Validation API
- Information for Journals
- Validation Task Forces
- wwPDB OneDep System
- PDB-IHM
Search
Visualize
Analyze
Download
Learn
- Training Courses
- Guide to PDB Data
- Molecule of the Month
- Educational Resources
- Curricula
- Browse
- News
- SciArt Galleries
- Irving Geis
- David Goodsell
About
Careers
COVID-19

233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

	Include CSM
Advanced Search \| Browse Annotations		Help

Search
Query History
Browse Annotations
MyPDB

QUERY: Citation Author = "Yu, C."

MyPDB Login

Search API

Advanced Search Query Builder

Help

Full Text

Structure Attributes

Help

NOT

Count

Add Subquery

Chemical Attributes

Sequence Similarity

Sequence Motif

Structure Similarity

Structure Motif

Chemical Similarity

Return

grouped by

Include Computed Structure Models (CSM)

Count

Clear

Search Summary

This query matches 298 Structures.

Refinements

Structure Determination Methodology

experimental (298)

Scientific Name of Source Organism

	Homo sapiens (174)
	Mus musculus (36)
	Severe acute respiratory syndrome coronavirus 2 (15)
	synthetic construct (15)
	Arabidopsis thaliana (9)
	Naja atra (9)
	Rattus norvegicus (7)
	Saccharomyces cerevisiae S288C (7)
	Bos taurus (6)
	Trypanosoma brucei (6)

More...

Taxonomy

	Eukaryota (260)
	Riboviria (31)
	Bacteria (26)
	other sequences (15)
	Duplodnaviria (4)
	Eukaryota (eukaryotes) (1)

Experimental Method

	X-RAY DIFFRACTION (188)
	ELECTRON MICROSCOPY (55)
	SOLUTION NMR (55)

Polymer Entity Type

	Protein (297)
	DNA (17)
	RNA (14)

Refinement Resolution (Å)

	1.0 - 1.5 (11)
	1.5 - 2.0 (33)
	2.0 - 2.5 (52)
	2.5 - 3.0 (74)
	3.0 - 3.5 (39)
	3.5 - 4.0 (22)
	4.0 - 4.5 (4)
	> 4.5 (8)

Release Date

	1990 - 1994 (5)
	1995 - 1999 (11)
	2000 - 2004 (6)
	2005 - 2009 (29)
	2010 - 2014 (50)
	2015 - 2019 (82)
	2020 - 2024 (114)
	2025 - 2029 (1)

Enzyme Classification Name

	Transferases (71)
	Oxidoreductases (19)
	Hydrolases (43)
	Translocases (5)
	Ligases (3)

Membrane Protein Annotation

	MemProtMD (5)
	PDBTM (5)
	OPM (3)

Symmetry Type

	Asymmetric (214)
	Cyclic (75)
	Dihedral (6)
	Icosahedral (5)
	Tetrahedral (1)

SCOP Classification

	Alpha and beta proteins (a+b) (61)
	All beta proteins (48)
	All alpha proteins (28)
	Membrane and cell surface proteins and peptides (5)
	Artifacts (23)
	Small proteins (16)
	Alpha and beta proteins (a/b) (11)
	Peptides (1)

AllSelected

1 to 25 of 298 Structures

Page 1 of 12

Sort by

Explore in 3D

1CHV \| pdb_00001chv	Download File View File

ELUCIDATION OF THE SOLUTION STRUCTURE OF CARDIOTOXIN ANALOGUE V FROM THE TAIWAN COBRA (NAJA NAJA ATRA) VENOM

Jayaraman, G., Kumar, T.K.S., Tsai, C.C., Yu, C.

(2000) Protein Sci 9: 637-646

Released	2000-03-30
Method	SOLUTION NMR
Organisms	Naja atra
Macromolecule	PROTEIN (CARDIOTOXIN ANALOGUE V) (protein)

Explore in 3D

1COD \| pdb_00001cod	Download File View File

SOLUTION CONFORMATION OF COBROTOXIN: A NUCLEAR MAGNETIC RESONANCE AND HYBRID DISTANCE GEOMETRY-DYNAMICAL SIMULATED ANNEALING STUDY

Yu, C., Bhaskaran, R., Yang, C.C.

(1993) Biochemistry 32: 2131-2136

Released	1995-01-26
Method	SOLUTION NMR
Organisms	Naja atra
Macromolecule	COBROTOXIN (protein)

Explore in 3D

1COE \| pdb_00001coe	Download File View File

SOLUTION CONFORMATION OF COBROTOXIN: A NUCLEAR MAGNETIC RESONANCE AND HYBRID DISTANCE GEOMETRY-DYNAMICAL SIMULATED ANNEALING STUDY

Yu, C., Bhaskaran, R., Yang, C.C.

(1993) Biochemistry 32: 2131-2136

Released	1995-01-26
Method	SOLUTION NMR
Organisms	Naja atra
Macromolecule	COBROTOXIN (protein)

Explore in 3D

1CRE \| pdb_00001cre	Download File View File

CARDIOTOXIN II FROM TAIWAN COBRA VENOM, NAJA NAJA ATRA: STRUCTURE IN SOLUTION AND COMPARISION AMONG HOMOLOGOUS CARDIOTOXINS

Bhaskaran, R., Huang, C.C., Chang, K.D., Yu, C.

(1994) J Biological Chem 269: 23500-23508

Released	1994-05-31
Method	SOLUTION NMR
Organisms	Naja atra
Macromolecule	CARDIOTOXIN II (protein)

Explore in 3D

1CRF \| pdb_00001crf	Download File View File

CARDIOTOXIN II FROM TAIWAN COBRA VENOM, NAJA NAJA ATRA: STRUCTURE IN SOLUTION AND COMPARISION AMONG HOMOLOGOUS CARDIOTOXINS

Bhaskaran, R., Huang, C.C., Chang, K.D., Yu, C.

(1994) J Biological Chem 269: 23500-23508

Released	1994-05-31
Method	SOLUTION NMR
Organisms	Naja atra
Macromolecule	CARDIOTOXIN II (protein)

Explore in 3D

1FLV \| pdb_00001flv	Download File View File

STRUCTURE OF THE OXIDIZED LONG CHAIN FLAVODOXIN FROM ANABAENA 7120 AT 2 ANGSTROMS RESOLUTION

Rao, S.T., Sundaralingam, M.

(1992) Protein Sci 1: 1413-1427

Released	1993-10-31
Method	X-RAY DIFFRACTION 2 Å
Organisms	Nostoc sp. PCC 7120 = FACHB-418
Macromolecule	FLAVODOXIN (protein)
Unique Ligands	FMN

Explore in 3D

1FMM \| pdb_00001fmm	Download File View File

SOLUTION STRUCTURE OF NFGF-1

Arunkumar, A.I., Srisailam, S., Kumar, T.K.S., Chiu, I.M., Yu, C.

(2002) J Biological Chem 277: 46424-46432

Released	2001-08-18
Method	SOLUTION NMR
Organisms	Notophthalmus viridescens
Macromolecule	ACIDIC FIBROBLAST GROWTH FACTOR (protein)

Explore in 3D

1FTG \| pdb_00001ftg	Download File View File

STRUCTURE OF APOFLAVODOXIN: CLOSURE OF A TYROSINE/TRYPTOPHAN AROMATIC GATE LEADS TO A COMPACT FOLD

Romero, A.

(1996) Nat Struct Biol 3: 329-332

Released	1996-12-23
Method	X-RAY DIFFRACTION 2 Å
Organisms	Nostoc sp. PCC 7119
Macromolecule	APOFLAVODOXIN (protein)
Unique Ligands	SO4

Explore in 3D

1H4A \| pdb_00001h4a	Download File View File

Human GammaD Crystallin R58H mutant structure AT 1.15 A resolution

Basak, A.K., Slingsby, C.

(2003) J Mol Biology 328: 1137

Released	2003-05-08
Method	X-RAY DIFFRACTION 1.15 Å
Organisms	Homo sapiens
Macromolecule	Gamma-crystallin D (protein)

Explore in 3D

1HK0 \| pdb_00001hk0	Download File View File

Human GammaD Crystallin Structure at 1.25 A Resolution

Basak, A.K., Slingsby, C.

(2003) J Mol Biology 328: 1137-1147

Released	2003-05-08
Method	X-RAY DIFFRACTION 1.25 Å
Organisms	Homo sapiens
Macromolecule	Gamma-crystallin D (protein)

Explore in 3D

1HP9 \| pdb_00001hp9	Download File View File

kappa-Hefutoxins: a novel Class of Potassium Channel Toxins from Scorpion venom

Srinivasan, K.N., Sivaraja, V., Huys, I., Sasaki, T., Cheng, B., Kumar, T.K.S., Sato, K., Tytgat, J., Yu, C., Brian Chia, C.S., Ranganathan, S., Bowie, J.H., Kini, R.M., Gopalakrishnakone, P.

(2002) J Biological Chem 277: 30040-30047

Released	2002-08-28
Method	SOLUTION NMR
Organisms	Chersonesometrus fulvipes
Macromolecule	kappa-hefutoxin 1 (protein)

Explore in 3D

1KBS \| pdb_00001kbs	Download File View File

SOLUTION STRUCTURE OF CARDIOTOXIN IV, NMR, 1 STRUCTURE

Jeng, J.Y., Kumar, T.K.S., Jayaraman, G., Yu, C.

(1997) Biochemistry 36: 14635-14641

Released	1997-07-23
Method	SOLUTION NMR
Organisms	Naja atra
Macromolecule	CTX IV (protein)

Explore in 3D

1KBT \| pdb_00001kbt	Download File View File

SOLUTION STRUCTURE OF CARDIOTOXIN IV, NMR, 12 STRUCTURES

Jeng, J.Y., Kumar, T.K.S., Jayaraman, G., Yu, C.

(1997) Biochemistry 36: 14635-14641

Released	1997-07-23
Method	SOLUTION NMR
Organisms	Naja atra
Macromolecule	CTX IV (protein)

Explore in 3D

1QHE \| pdb_00001qhe	Download File View File

ENERGETICS OF A HYDROGEN BOND (CHARGED AND NEUTRAL) AND OF A CATION-PI INTERACTION IN APOFLAVODOXIN

Romero, A., Fernandez-Recio, J., Sancho, J.

(1999) J Mol Biology 290: 319-330

Released	1999-05-20
Method	X-RAY DIFFRACTION 2 Å
Organisms	Nostoc sp. PCC 7119
Macromolecule	PROTEIN (FLAVODOXIN) (protein)
Unique Ligands	SO4

Explore in 3D

1RCF \| pdb_00001rcf	Download File View File

STRUCTURE OF THE TRIGONAL FORM OF RECOMBINANT OXIDIZED FLAVODOXIN FROM ANABAENA 7120 AT 1.40 ANGSTROMS RESOLUTION

Burkhart, B., Ramakrishnan, B., Yan, H., Reedstrom, R., Markley, J., Straus, N., Sundaralingam, M.

(1995) Acta Crystallogr D Biol Crystallogr 51: 318-330

Released	1995-01-26
Method	X-RAY DIFFRACTION 1.4 Å
Organisms	Nostoc sp. PCC 7120 = FACHB-418
Macromolecule	FLAVODOXIN (protein)
Unique Ligands	FMN, SO4

Explore in 3D

1SQB \| pdb_00001sqb	Download File View File

Crystal Structure Analysis of Bovine Bc1 with Azoxystrobin

Esser, L., Quinn, B., Li, Y.F., Zhang, M., Elberry, M., Yu, L., Yu, C.A., Xia, D.

(2004) J Mol Biology 341: 281-302

Released	2004-09-07
Method	X-RAY DIFFRACTION 2.69 Å
Organisms	Bos taurus
Macromolecule	Unique protein chains: 11
Unique Ligands	AZO, FES, HEM

Explore in 3D

1SQP \| pdb_00001sqp	Download File View File

Crystal Structure Analysis of Bovine Bc1 with Myxothiazol

Esser, L., Quinn, B., Li, Y.F., Zhang, M., Elberry, M., Yu, L., Yu, C.A., Xia, D.

(2004) J Mol Biology 341: 281-302

Released	2005-11-01
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Bos taurus
Macromolecule	Unique protein chains: 11
Unique Ligands	CDL, FES, HEC, MYX, PEE, PLX

Explore in 3D

1SQQ \| pdb_00001sqq	Download File View File

Crystal Structure Analysis of Bovine Bc1 with Methoxy Acrylate Stilbene (MOAS)

Esser, L., Quinn, B., Li, Y.F., Zhang, M., Elberry, M., Yu, L., Yu, C.A., Xia, D.

(2004) J Mol Biology 341: 281-302

Released	2005-10-25
Method	X-RAY DIFFRACTION 3 Å
Organisms	Bos taurus
Macromolecule	Unique protein chains: 11
Unique Ligands	FES, HEC, OST, UQ2

Explore in 3D

1SQV \| pdb_00001sqv	Download File View File

Crystal Structure Analysis of Bovine Bc1 with UHDBT

Esser, L., Quinn, B., Li, Y.F., Zhang, M., Elberry, M., Yu, L., Yu, C.A., Xia, D.

(2004) J Mol Biology 341: 281-302

Released	2005-09-06
Method	X-RAY DIFFRACTION 2.85 Å
Organisms	Bos taurus
Macromolecule	Unique protein chains: 11
Unique Ligands	FES, HEC, UHD, UQ2

Explore in 3D

1SQX \| pdb_00001sqx	Download File View File

Crystal Structure Analysis of Bovine Bc1 with Stigmatellin A

Esser, L., Quinn, B., Li, Y.F., Zhang, M., Elberry, M., Yu, L., Yu, C.A., Xia, D.

(2004) J Mol Biology 341: 281-302

Released	2005-09-06
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Bos taurus
Macromolecule	Unique protein chains: 11
Unique Ligands	FES, HEC, SMA, UQ2

Explore in 3D

1TXA \| pdb_00001txa	Download File View File

SOLUTION NMR STRUCTURE OF TOXIN B, A LONG NEUROTOXIN FROM THE VENOM OF THE KING COBRA, MINIMIZED AVERAGE STRUCTURE

Peng, S.-S., Kumar, T.K.S., Jayaraman, G., Chang, C.-C., Yu, C.

(1997) J Biological Chem 272: 7817-7823

Released	1997-10-15
Method	SOLUTION NMR
Organisms	Ophiophagus hannah
Macromolecule	TOXIN B (protein)

Explore in 3D

1TXB \| pdb_00001txb	Download File View File

SOLUTION NMR STRUCTURE OF TOXIN B, A LONG NEUROTOXIN FROM THE VENOM OF THE KING COBRA, 10 STRUCTURES

Peng, S.-S., Kumar, T.K.S., Jayaraman, G., Chang, C.-C., Yu, C.

(1997) J Biological Chem 272: 7817-7823

Released	1997-10-15
Method	SOLUTION NMR
Organisms	Ophiophagus hannah
Macromolecule	TOXIN B (protein)

Explore in 3D

1WVZ \| pdb_00001wvz	Download File View File

Solution Structure of the D2 Domain of the Fibroblast Growth Factor

Hung, K.W., Kumar, T.K.S., Yu, C.

To be published

Released	2005-12-28
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Fibroblast growth factor receptor 2 (protein)

Explore in 3D

1X32 \| pdb_00001x32	Download File View File

Three Dimensional Solution Structure of the Chromo1 domain of cpSRP43

Sivaraja, V., Kumar, T.K., Henry, R., Yu, C.

(2005) J Biological Chem 280: 41465-41471

Released	2005-09-20
Method	SOLUTION NMR
Organisms	Arabidopsis thaliana
Macromolecule	chloroplast signal recognition particle component (protein)

Explore in 3D

1X3P \| pdb_00001x3p	Download File View File

3D solution structure of the Chromo-3 domain of cpSRP43

Leena, P.S.T., Kumar, T.K.S., Sivaraja, V., Henry, R., Yu, C.

To be published

Released	2005-09-20
Method	SOLUTION NMR
Organisms	Arabidopsis thaliana
Macromolecule	cpSRP43 (protein)

1 to 25 of 298 Structures

Page 1 of 12

Sort by

About
About Us
Citing Us
Publications
Team
Careers
Usage & Privacy

Support
Contact Us
Help
Website FAQ
Glossary
Service Status

RCSB PDB is hosted by

RCSB PDB is a member of the

RCSB Partners
Nucleic Acid Knowledgebase

wwPDB Partners
RCSB PDB
PDBe
PDBj
BMRB
EMDB

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

Prepare Data

Validate Data

Deposit Data

Help and Resources

Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1CHV | pdb_00001chv

1COD | pdb_00001cod

1COE | pdb_00001coe

1CRE | pdb_00001cre

1CRF | pdb_00001crf

1FLV | pdb_00001flv

1FMM | pdb_00001fmm

1FTG | pdb_00001ftg

1H4A | pdb_00001h4a

1HK0 | pdb_00001hk0

1HP9 | pdb_00001hp9

1KBS | pdb_00001kbs

1KBT | pdb_00001kbt

1QHE | pdb_00001qhe

1RCF | pdb_00001rcf

1SQB | pdb_00001sqb

1SQP | pdb_00001sqp

1SQQ | pdb_00001sqq

1SQV | pdb_00001sqv

1SQX | pdb_00001sqx

1TXA | pdb_00001txa

1TXB | pdb_00001txb

1WVZ | pdb_00001wvz

1X32 | pdb_00001x32

1X3P | pdb_00001x3p