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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Zhao, Y."

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Search Summary

This query matches 1,291 Structures.

Refinements

Structure Determination Methodology

experimental (1,291)

Scientific Name of Source Organism

	Homo sapiens (678)
	Severe acute respiratory syndrome coronavirus 2 (118)
	synthetic construct (47)
	Mus musculus (34)
	Mycobacterium tuberculosis H37Rv (26)
	Saccharomyces cerevisiae (23)
	Ureaplasma diversum (21)
	Oryctolagus cuniculus (18)
	Plasmodium falciparum 3D7 (17)
	Rattus norvegicus (17)

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Taxonomy

	Eukaryota (919)
	Bacteria (285)
	Riboviria (164)
	other sequences (47)
	Archaea (12)
	Varidnaviria (11)
	Duplodnaviria (9)
	Monodnaviria (9)
	environmental samples (8)
	Riboviria (RNA viruses and viroids) (2)

More...

Experimental Method

	X-RAY DIFFRACTION (993)
	ELECTRON MICROSCOPY (271)
	SOLUTION NMR (26)
	SOLID-STATE NMR (1)

Polymer Entity Type

	Protein (1,290)
	DNA (86)
	RNA (52)

Refinement Resolution (Å)

	0.5 - 1.0 (1)
	1.0 - 1.5 (103)
	1.5 - 2.0 (334)
	2.0 - 2.5 (297)
	2.5 - 3.0 (260)
	3.0 - 3.5 (161)
	3.5 - 4.0 (68)
	4.0 - 4.5 (18)
	> 4.5 (22)

Release Date

	1995 - 1999 (12)
	2000 - 2004 (14)
	2005 - 2009 (107)
	2010 - 2014 (189)
	2015 - 2019 (276)
	2020 - 2024 (656)
	2025 - 2029 (37)

Enzyme Classification Name

	Hydrolases (334)
	Transferases (176)
	Oxidoreductases (59)
	Isomerases (33)
	Lyases (23)
	Ligases (10)
	Translocases (2)

Membrane Protein Annotation

	PDBTM (164)
	mpstruc (116)
	MemProtMD (128)
	OPM (96)

Symmetry Type

	Asymmetric (886)
	Cyclic (354)
	Dihedral (50)
	Octahedral (22)
	Icosahedral (7)
	Helical (3)

SCOP Classification

	All beta proteins (85)
	Alpha and beta proteins (a/b) (123)
	Alpha and beta proteins (a+b) (113)
	All alpha proteins (70)
	Artifacts (87)
	Multi-domain proteins (alpha and beta) (12)
	Membrane and cell surface proteins and peptides (8)
	Coiled coil proteins (1)
	Small proteins (1)

AllSelected

1 to 25 of 1,291 Structures

Page 1 of 52

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1AAX \| pdb_00001aax	Download File View File

CRYSTAL STRUCTURE OF PROTEIN TYROSINE PHOSPHATASE 1B COMPLEXED WITH TWO BIS(PARA-PHOSPHOPHENYL)METHANE (BPPM) MOLECULES

Puius, Y.A., Zhao, Y., Sullivan, M., Lawrence, D., Almo, S.C., Zhang, Z.-Y.

(1997) Proc Natl Acad Sci U S A 94: 13420-13425

Released	1998-03-04
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Homo sapiens
Macromolecule	PROTEIN TYROSINE PHOSPHATASE 1B (protein)
Unique Ligands	BPM, MG

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1BF5 \| pdb_00001bf5	Download File View File

TYROSINE PHOSPHORYLATED STAT-1/DNA COMPLEX

Kuriyan, J., Zhao, Y., Chen, X., Vinkemeier, U., Jeruzalmi, D., Darnell Jr., J.E.

(1998) Cell 93: 827-839

Released	1998-08-12
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Homo sapiens
Macromolecule	SIGNAL TRANSDUCER AND ACTIVATOR OF TRANSCRIPTION 1-ALPHA/BETA (protein) DNA (5'-D(APCPAPGPTPTPTPCPCPCPGPTPAPAPAPTPG PC)-3') (nucleic acid) DNA (5'-D(TPGPCPAPTPTPTPAPCPGPGPGPAPAPAPCPT PG)-3') (nucleic acid)

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1D5A \| pdb_00001d5a	Download File View File

CRYSTAL STRUCTURE OF AN ARCHAEBACTERIAL DNA POLYMERASE D.TOK. DEPOSITION OF SECOND NATIVE STRUCTURE AT 2.4 ANGSTROM

Zhao, Y., Jeruzalmi, D., Leighton, L., Lasken, R., Kuriyan, J.

(1999) Structure 7: 1189-1199

Released	2000-03-24
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Desulfurococcus sp. Tok
Macromolecule	PROTEIN (DNA POLYMERASE) (protein)
Unique Ligands	MG, SO4

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1EEN \| pdb_00001een	Download File View File

CRYSTAL STRUCTURE OF PROTEIN TYROSINE PHOSPHATASE 1B COMPLEXED WITH ACETYL-D-A-D-BPA-PTYR-L-I-P-Q-Q-G

Puius, Y.A., Zhao, Y., Almo, S.C., Zhang, Z.Y.

(2000) Biochemistry 39: 8171-8179

Released	2001-02-01
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Homo sapiens
Macromolecule	ALA-ASP-PBF-PTR-LEU-ILE-PRO (protein) PROTEIN TYROSINE PHOSPHATASE 1B (protein)
Unique Ligands	ACY, MG

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1EEO \| pdb_00001eeo	Download File View File

CRYSTAL STRUCTURE OF PROTEIN TYROSINE PHOSPHATASE 1B COMPLEXED WITH ACETYL-E-L-E-F-PTYR-M-D-Y-E-NH2

Sarmiento, M., Puius, Y.A., Vetter, S.W., Lawrence, D.S., Almo, S.C., Zhang, Z.Y.

(2000) Biochemistry 39: 8171-8179

Released	2001-02-01
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Homo sapiens
Macromolecule	ACETYL-E-L-E-F-PTYR-M-D-Y-E-NH2 PEPTIDE (protein) PROTEIN TYROSINE PHOSPHATASE 1B (protein)
Unique Ligands	MG

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1EV7 \| pdb_00001ev7	Download File View File

CRYSTAL STRUCTURE OF DNA RESTRICTION ENDONUCLEASE NAEI

Huai, Q., Colandene, J.D., Chen, Y., Luo, F., Zhao, Y.

(2000) EMBO J 19: 3110-3118

Released	2000-10-19
Method	X-RAY DIFFRACTION 2.38 Å
Organisms	Lentzea aerocolonigenes
Macromolecule	TYPE IIE RESTRICTION ENDONUCLEASE NAEI (protein)

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1F0J \| pdb_00001f0j	Download File View File

CATALYTIC DOMAIN OF HUMAN PHOSPHODIESTERASE 4B2B

Xu, R.X., Hassell, A.M., Vanderwall, D., Lambert, M.H., Holmes, W.D., Luther, M.A., Rocque, W.J., Milburn, M.V., Zhao, Y., Ke, H., Nolte, R.T.

(2000) Science 288: 1822-1825

Released	2000-07-26
Method	X-RAY DIFFRACTION 1.77 Å
Organisms	Homo sapiens
Macromolecule	PHOSPHODIESTERASE 4B (protein)
Unique Ligands	ARS, MG, ZN

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1FGL \| pdb_00001fgl	Download File View File

Cyclophilin A complexed with a fragment of HIV-1 GAG protein

Zhao, Y., Chen, Y., Schutkowski, M., Fischer, G., Ke, H.

(1997) Structure 5: 139-146

Released	1997-04-01
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Homo sapiens Human immunodeficiency virus type 1 (WMJ2 ISOLATE)
Macromolecule	CYCLOPHILIN A (protein) HIV-1 GAG PROTEIN (protein)

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1JQJ \| pdb_00001jqj	Download File View File

Mechanism of Processivity Clamp Opening by the Delta Subunit Wrench of the Clamp Loader Complex of E. coli DNA Polymerase III: Structure of the beta-delta complex

Jeruzalmi, D., Yurieva, O., Zhao, Y., Young, M., Stewart, J., Hingorani, M., O'Donnell, M., Kuriyan, J.

(2001) Cell 106: 417-428

Released	2001-11-07
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Escherichia coli
Macromolecule	DNA polymerase III, beta chain (protein) DNA polymerase III, delta subunit (protein)

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1JQL \| pdb_00001jql	Download File View File

Mechanism of Processivity Clamp Opening by the Delta Subunit Wrench of the Clamp Loader Complex of E. coli DNA Polymerase III: Structure of beta-delta (1-140)

Jeruzalmi, D., Yurieva, O., Zhao, Y., Young, M., Stewart, J., Hingorani, M., O'Donnell, M., Kuriyan, J.

(2001) Cell 106: 417-428

Released	2001-09-26
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Escherichia coli
Macromolecule	DNA Polymerase III, BETA CHAIN (protein) DNA Polymerase III, DELTA SUBUNIT (protein)

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1M63 \| pdb_00001m63	Download File View File

Crystal structure of calcineurin-cyclophilin-cyclosporin shows common but distinct recognition of immunophilin-drug complexes

Huai, Q., Kim, H.-Y., Liu, Y., Zhao, Y., Mondragon, A., Liu, J.O., Ke, H.

(2002) Proc Natl Acad Sci U S A 99: 12037

Released	2002-09-25
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Homo sapiens Tolypocladium inflatum
Macromolecule	CALCINEURIN B SUBUNIT ISOFORM 1 (protein) CYCLOSPORIN A (protein) PEPTIDYL-PROLYL CIS-TRANS ISOMERASE A (protein) SERINE/THREONINE PROTEIN PHOSPHATASE 2B CATALYTIC SUBUNIT, ALPHA ISOFORM (protein)
Unique Ligands	CA, FE, ZN

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1ONS \| pdb_00001ons	Download File View File

Crystal structure of Escherichia coli heat shock protein YedU

Zhao, Y., Fox, R.O.

(2003) Protein Sci 12: 2303-2311

Released	2004-01-20
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Escherichia coli
Macromolecule	Chaperone protein hchA (protein)
Unique Ligands	ZN

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1PTY \| pdb_00001pty	Download File View File

CRYSTAL STRUCTURE OF PROTEIN TYROSINE PHOSPHATASE 1B COMPLEXED WITH TWO PHOSPHOTYROSINE MOLECULES

Zhao, Y., Puius, Y.A., Sullivan, M., Lawrence, D., Almo, S.C., Zhang, Z.-Y.

(1997) Proc Natl Acad Sci U S A 94: 13420-13425

Released	1998-01-21
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Homo sapiens
Macromolecule	PROTEIN TYROSINE PHOSPHATASE 1B (protein)
Unique Ligands	MG, PTR

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1Q2B \| pdb_00001q2b	Download File View File

CELLOBIOHYDROLASE CEL7A WITH DISULPHIDE BRIDGE ADDED ACROSS EXO-LOOP BY MUTATIONS D241C AND D249C

Stahlberg, J., Harris, M., Jones, T.A.

(2003) J Mol Biology 333: 817-829

Released	2003-11-25
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Trichoderma reesei
Macromolecule	EXOCELLOBIOHYDROLASE I (protein)
Unique Ligands	CO, NAG

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1Q2E \| pdb_00001q2e	Download File View File

CELLOBIOHYDROLASE CEL7A WITH LOOP DELETION 245-252 AND BOUND NON-HYDROLYSABLE CELLOTETRAOSE

Stahlberg, J., Harris, M., Jones, T.A.

(2003) J Mol Biology 333: 817-829

Released	2003-11-25
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Trichoderma reesei
Macromolecule	EXOCELLOBIOHYDROLASE I (protein)
Unique Ligands	CA, NAG
Unique branched monosaccharides	GLC, MGL, SGC

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1QQC \| pdb_00001qqc	Download File View File

CRYSTAL STRUCTURE OF AN ARCHAEBACTERIAL DNA POLYMERASE D.TOK

Zhao, Y., Jeruzalmi, D., Leighton, L., Lasken, R., Kuriyan, J.

(1999) Structure 7: 1189-1199

Released	1999-10-14
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Desulfurococcus sp. Tok
Macromolecule	DNA POLYMERASE II (protein)
Unique Ligands	MG, SO4

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1R5I \| pdb_00001r5i	Download File View File

Crystal structure of the MAM-MHC complex

Zhao, Y., Li, Z., Drozd, S.J., Guo, Y., Mourad, W., Li, H.

(2004) Structure 12: 277-288

Released	2004-03-16
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Homo sapiens Influenza A virus (strain A/Swine/Hong Kong/81/1978 H3N2) Metamycoplasma arthritidis
Macromolecule	HLA class II histocompatibility antigen, DR alpha chain (protein) HLA class II histocompatibility antigen, DRB1-1 beta chain (protein) Hemagglutinin peptide (protein) superantigen (protein)
Unique Ligands	PO4

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1RMH \| pdb_00001rmh	Download File View File

RECOMBINANT CYCLOPHILIN A FROM HUMAN T CELL

Zhao, Y., Ke, H.

(1996) Biochemistry 35: 7356-7361

Released	1996-10-14
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Homo sapiens
Macromolecule	AAPF PEPTIDE SUBSTRATE (protein) CYCLOPHILIN A (protein)

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1TXJ \| pdb_00001txj	Download File View File

Crystal structure of translationally controlled tumour-associated protein (TCTP) from Plasmodium knowlesi

Walker, J.R., Vedadi, M., Sharma, S., Houston, S., Lew, J., Amani, M., Wasney, G., Skarina, T., Bray, J., Sundstrom, M., Arrowsmith, C., Edwards, A., Hui, R., Structural Genomics Consortium (SGC)

(2007) Mol Biochem Parasitol 151: 100-110

Released	2004-07-20
Method	X-RAY DIFFRACTION 2 Å
Organisms	Plasmodium knowlesi
Macromolecule	translationally controlled tumour-associated protein (TCTP) from Plasmodium knowlesi, PKN_PFE0545c (protein)