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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Zhou, J."

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Search Summary

This query matches 716 Structures.

Refinements

Structure Determination Methodology

experimental (716)

Scientific Name of Source Organism

	Homo sapiens (253)
	Severe acute respiratory syndrome coronavirus 2 (81)
	Clostridioides difficile (24)
	Escherichia coli (24)
	synthetic construct (24)
	Human immunodeficiency virus 1 (22)
	Arabidopsis thaliana (19)
	Mus musculus (19)
	Sulfolobus acidocaldarius DSM 639 (13)
	Clostridioides difficile 630 (12)

More...

Taxonomy

	Eukaryota (443)
	Bacteria (221)
	Riboviria (123)
	Archaea (25)
	other sequences (24)
	Duplodnaviria (9)

Experimental Method

	X-RAY DIFFRACTION (527)
	ELECTRON MICROSCOPY (180)
	SOLUTION NMR (8)
	SOLID-STATE NMR (1)

Polymer Entity Type

	Protein (713)
	DNA (42)
	RNA (34)

Refinement Resolution (Å)

	1.0 - 1.5 (24)
	1.5 - 2.0 (167)
	2.0 - 2.5 (180)
	2.5 - 3.0 (157)
	3.0 - 3.5 (103)
	3.5 - 4.0 (42)
	4.0 - 4.5 (13)
	> 4.5 (21)

Release Date

	1995 - 1999 (6)
	2000 - 2004 (4)
	2005 - 2009 (41)
	2010 - 2014 (86)
	2015 - 2019 (113)
	2020 - 2024 (444)
	2025 - 2029 (22)

Enzyme Classification Name

	Transferases (137)
	Hydrolases (124)
	Oxidoreductases (69)
	Ligases (39)
	Isomerases (23)
	Lyases (21)
	Translocases (6)

Membrane Protein Annotation

	PDBTM (49)
	MemProtMD (34)
	mpstruc (28)
	OPM (24)

Symmetry Type

	Asymmetric (439)
	Cyclic (215)
	Dihedral (59)
	Octahedral (10)

SCOP Classification

	Alpha and beta proteins (a/b) (83)
	All beta proteins (58)
	All alpha proteins (53)
	Alpha and beta proteins (a+b) (59)
	Artifacts (54)
	Coiled coil proteins (4)
	Multi-domain proteins (alpha and beta) (5)
	Small proteins (10)

AllSelected

1 to 25 of 716 Structures

Page 1 of 29

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1CW3 \| pdb_00001cw3	Download File View File

HUMAN MITOCHONDRIAL ALDEHYDE DEHYDROGENASE COMPLEXED WITH NAD+ AND MN2+

Ni, L., Zhou, J., Hurley, T.D., Weiner, H.

(1999) Protein Sci 8: 2784-2790

Released	1999-08-31
Method	X-RAY DIFFRACTION 2.58 Å
Organisms	Homo sapiens
Macromolecule	MITOCHONDRIAL ALDEHYDE DEHYDROGENASE (protein)
Unique Ligands	MG, MN, NAD

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1OZB \| pdb_00001ozb	Download File View File

Crystal Structure of SecB complexed with SecA C-terminus

Zhou, J., Xu, Z.

(2003) Nat Struct Biol 10: 942-947

Released	2003-10-14
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Haemophilus influenzae
Macromolecule	Preprotein translocase secA subunit (protein) Protein-export protein secB (protein)
Unique Ligands	ZN

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1QSN \| pdb_00001qsn	Download File View File

CRYSTAL STRUCTURE OF TETRAHYMENA GCN5 WITH BOUND COENZYME A AND HISTONE H3 PEPTIDE

Rojas, J.R., Trievel, R.C., Zhou, J., Mo, Y., Li, X., Berger, S.L., David Allis, C., Marmorstein, R.

(1999) Nature 401: 93-98

Released	1999-09-08
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Saccharomyces cerevisiae Tetrahymena thermophila
Macromolecule	HISTONE H3 (protein) TGCN5 HISTONE ACETYL TRANSFERASE (protein)
Unique Ligands	COA

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1QSR \| pdb_00001qsr	Download File View File

CRYSTAL STRUCTURE OF TETRAHYMENA GCN5 WITH BOUND ACETYL-COENZYME A

Rojas, J.R., Trievel, R.C., Zhou, J., Mo, Y., Li, X., Berger, S.L., David Allis, C., Marmorstein, R.

(1999) Nature 401: 93-98

Released	1999-09-08
Method	X-RAY DIFFRACTION 2 Å
Organisms	Tetrahymena thermophila
Macromolecule	TGCN5 HISTONE ACETYL TRANSFERASE (protein)
Unique Ligands	ACO

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1QST \| pdb_00001qst	Download File View File

CRYSTAL STRUCTURE OF TETRAHYMENA GCN5

Rojas, J.R., Trievel, R.C., Zhou, J., Mo, Y., Li, X., Berger, S.L., David Allis, C., Marmorstein, R.

(1999) Nature 401: 93-98

Released	1999-09-08
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Tetrahymena thermophila
Macromolecule	TGCN5 HISTONE ACETYL TRANSFERASE (protein)
Unique Ligands	EPE

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1SPX \| pdb_00001spx	Download File View File

Crystal Structure of Glucose Dehydrogenase of Caenorhabditis Elegans in the Apo-Form

Schormann, N., Zhou, J., McCombs, D., Bray, T., Symersky, J., Huang, W.-Y., Luan, C.-H., Gray, R., Luo, D., Arabashi, A., Bunzel, B., Nagy, L., Lu, S., Li, S., Lin, G., Zhang, Y., Qiu, S., Tsao, J., Luo, M., Carson, M., Southeast Collaboratory for Structural Genomics (SECSG)

To be published

Released	2004-03-23
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Caenorhabditis elegans
Macromolecule	short-chain reductase family member (5L265) (protein)

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1WNO \| pdb_00001wno	Download File View File

Crystal structure of a native chitinase from Aspergillus fumigatus YJ-407

Hu, H., Wang, G., Yang, H., Zhou, J., Mo, L., Yang, K., Jin, C., Jin, C., Rao, Z.

To be published

Released	2005-03-15
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Aspergillus fumigatus
Macromolecule	Chitinase (protein)
Unique Ligands	MG, NAG, NDG, SO4

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1XHL \| pdb_00001xhl	Download File View File

Crystal Structure of putative Tropinone Reductase-II from Caenorhabditis Elegans with Cofactor and Substrate

Schormann, N., Karpova, E., Zhou, J., Zhang, Y., Symersky, J., Bunzel, R., Huang, W.-Y., Arabshahi, A., Qiu, S., Luan, C.-H., Gray, R., Carson, M., Tsao, J., Luo, M., Johnson, D., Lu, S., Lin, G., Luo, D., Cao, Z., Li, S., McKInstry, A., Shang, Q., Chen, Y.-J., Bray, T., Nagy, L., DeLucas, L., Southeast Collaboratory for Structural Genomics (SECSG)

To be published

Released	2004-09-28
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Caenorhabditis elegans
Macromolecule	Short-chain dehydrogenase/reductase family member (5L265), putative Tropinone Reductase-II (protein)
Unique Ligands	NDP, TNE

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1XKQ \| pdb_00001xkq	Download File View File

Crystal Structure of Short-Chain Dehydrogenase/Reductase of unknown Function from Caenorhabditis Elegans with Cofactor

Schormann, N., Zhou, J., Karpova, E., Zhang, Y., Symersky, J., Bunzel, B., Huang, W.-Y., Arabshahi, A., Qiu, S., Luan, C.-H., Gray, R., Carson, M., Tsao, J., Luo, M., Johnson, D., Lu, S., Lin, G., Luo, D., Cao, Z., Li, S., McKinstry, A., Shang, Q., Chen, Y.-J., Bray, T., Nagy, L., DeLucas, L., Southeast Collaboratory for Structural Genomics (SECSG)

To be published

Released	2004-10-12
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Caenorhabditis elegans
Macromolecule	short-chain reductase family member (5D234) (protein)
Unique Ligands	NDP

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1Y4K \| pdb_00001y4k	Download File View File

Lipoxygenase-1 (Soybean) at 100K, N694G Mutant

Chruszcz, M., Segraves, E., Holman, T.R., Minor, W.

(2006) Biochemistry 45: 10233-10242

Released	2005-12-13
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Glycine max
Macromolecule	Seed lipoxygenase-1 (protein)
Unique Ligands	ACT, EDO, FE2

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1YGH \| pdb_00001ygh	Download File View File

HAT DOMAIN OF GCN5 FROM SACCHAROMYCES CEREVISIAE

Trievel, R.C., Rojas, J.R., Sterner, D.E., Venkataramani, R., Wang, L., Zhou, J., Allis, C.D., Berger, S.L., Marmorstein, R.

(1999) Proc Natl Acad Sci U S A 96: 8931-8936

Released	1999-08-02
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	PROTEIN (TRANSCRIPTIONAL ACTIVATOR GCN5) (protein)
Unique Ligands	GOL

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1YIS \| pdb_00001yis	Download File View File

Structural genomics of Caenorhabditis elegans: adenylosuccinate lyase

Symersky, J., Schormann, N., Lu, S., Zhang, Y., Karpova, E., Qiu, S., Huang, W., Cao, Z., Zhou, J., Luo, M., Arabshahi, A., McKinstry, A., Luan, C.-H., Luo, D., Johnson, D., An, J., Tsao, J., Delucas, L., Shang, Q., Gray, R., Li, S., Bray, T., Chen, Y.-J., Southeast Collaboratory for Structural Genomics (SECSG)

To be published

Released	2005-01-25
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Caenorhabditis elegans
Macromolecule	adenylosuccinate lyase (protein)
Unique Ligands	SO4

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1ZA6 \| pdb_00001za6	Download File View File

The structure of an antitumor CH2-domain-deleted humanized antibody

Larson, S.B., Day, J.S., Glaser, S., Braslawsky, G., McPherson, A.

(2005) J Mol Biology 348: 1177-1190

Released	2005-05-10
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Homo sapiens
Macromolecule	IGG Heavy chain (protein) IGG Light chain (protein)

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1ZCT \| pdb_00001zct	Download File View File

structure of glycogenin truncated at residue 270 in a complex with UDP

Hurley, T.D., Stout, S.L., Miner, E., Zhou, J., Roach, P.J.

(2005) J Biological Chem 280: 23892-23899

Released	2005-04-26
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Oryctolagus cuniculus
Macromolecule	Glycogenin-1 (protein)
Unique Ligands	MN, UDP

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1ZCU \| pdb_00001zcu	Download File View File

apo form of the 162S mutant of glycogenin

Hurley, T.D., Stout, S.L., Miner, E., Zhou, J., Roach, P.J.

(2005) J Biological Chem 280: 23892-23899

Released	2005-04-26
Method	X-RAY DIFFRACTION 2 Å
Organisms	Oryctolagus cuniculus
Macromolecule	Glycogenin-1 (protein)

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1ZCV \| pdb_00001zcv	Download File View File

apo form of a mutant of glycogenin in which Asp159 is replaced by Asn

Hurley, T.D., Stout, S.L., Miner, E., Zhou, J., Roach, P.J.

(2005) J Biological Chem 280: 23892-23899

Released	2005-04-26
Method	X-RAY DIFFRACTION 1.98 Å
Organisms	Oryctolagus cuniculus
Macromolecule	Glycogenin-1 (protein)
Unique Ligands	SO4

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1ZCY \| pdb_00001zcy	Download File View File

apo form of a mutant of glycogenin in which Asp159 is replaced by Ser

Hurley, T.D., Stout, S.L., Miner, E., Zhou, J., Roach, P.J.

(2005) J Biological Chem 280: 23892-23899

Released	2005-04-26
Method	X-RAY DIFFRACTION 1.99 Å
Organisms	Oryctolagus cuniculus
Macromolecule	Glycogenin-1 (protein)
Unique Ligands	SO4

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1ZDF \| pdb_00001zdf	Download File View File

Ser162 mutant of glycogenin complexed with UDP-glucose and manganese

Hurley, T.D., Stout, S.L., Miner, E., Zhou, J., Roach, P.J.

(2005) J Biological Chem 280: 23892-23899

Released	2005-04-26
Method	X-RAY DIFFRACTION 2.45 Å
Organisms	Oryctolagus cuniculus
Macromolecule	Glycogenin-1 (protein)
Unique Ligands	MN, SO4, UPG

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1ZDG \| pdb_00001zdg	Download File View File

Ser159 mutant of glycogenin complexed with UDP-glucose and manganese

Hurley, T.D., Stout, S.L., Miner, E., Zhou, J., Roach, P.J.

(2005) J Biological Chem 280: 23892-23899

Released	2005-04-26
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Oryctolagus cuniculus
Macromolecule	Glycogenin-1 (protein)
Unique Ligands	MN, SO4, UPG

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1ZLM \| pdb_00001zlm	Download File View File

Crystal structure of the SH3 domain of human osteoclast stimulating factor

Chen, L., Wang, Y., Wells, D., Toh, D., Harold, H., Zhou, J., DiGiammarino, E., Meehan, E.J.

(2006) Acta Crystallogr Sect F Struct Biol Cryst Commun 62: 844-848

Released	2006-05-16
Method	X-RAY DIFFRACTION 1.07 Å
Organisms	Homo sapiens
Macromolecule	Osteoclast stimulating factor 1 (protein)

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2AX5 \| pdb_00002ax5	Download File View File

Solution Structure of Urm1 from Saccharomyces Cerevisiae

Xu, J., Huang, H., Zhang, J., Wu, J., Shi, Y.

(2006) Proc Natl Acad Sci U S A 103: 11625-11630

Released	2006-06-27
Method	SOLUTION NMR
Organisms	Saccharomyces cerevisiae
Macromolecule	Hypothetical 11.0 kDa protein in FAA3-MAS3 intergenic region (protein)

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2F5K \| pdb_00002f5k	Download File View File

Crystal structure of the chromo domain of human MRG15

Zhang, P., Du, J., Ding, J.

(2006) Nucleic Acids Res 34: 6621-6628

Released	2006-11-14
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Homo sapiens
Macromolecule	Mortality factor 4-like protein 1 (protein)

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2HZ6 \| pdb_00002hz6	Download File View File

The crystal structure of human IRE1-alpha luminal domain

Kaufman, R.J., Xu, Z., Zhou, J.

(2006) Proc Natl Acad Sci U S A 103: 14343-14348

Released	2006-08-29
Method	X-RAY DIFFRACTION 3.1 Å
Organisms	Homo sapiens
Macromolecule	Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant (protein)

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2IHX \| pdb_00002ihx	Download File View File

Solution Structure of the Rous Sarcoma Virus Nucleocapsid Protein:uPsi RNA Packaging Signal Complex

Zhou, J., Summers, M.

(2007) J Mol Biology 365: 453-467

Released	2007-01-16
Method	SOLUTION NMR
Organisms	Rous sarcoma virus
Macromolecule	Nucleocapsid (NC) Protein (protein) uPsi RNA (nucleic acid)
Unique Ligands	ZN

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2IS9 \| pdb_00002is9	Download File View File

Structure of yeast DCN-1

Yang, X., Zhou, J., Sun, L., Wei, Z., Gao, J., Gong, W., Xu, R.M., Rao, Z., Liu, Y.

(2007) J Biological Chem 282: 24490-24494

Released	2007-06-26
Method	X-RAY DIFFRACTION 1.92 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	Defective in cullin neddylation protein 1 (protein)
Unique Ligands	CL, MES, PT

1 to 25 of 716 Structures

Page 1 of 29

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1CW3 | pdb_00001cw3

1OZB | pdb_00001ozb

1QSN | pdb_00001qsn

1QSR | pdb_00001qsr

1QST | pdb_00001qst

1SPX | pdb_00001spx

1WNO | pdb_00001wno

1XHL | pdb_00001xhl

1XKQ | pdb_00001xkq

1Y4K | pdb_00001y4k

1YGH | pdb_00001ygh

1YIS | pdb_00001yis

1ZA6 | pdb_00001za6

1ZCT | pdb_00001zct

1ZCU | pdb_00001zcu

1ZCV | pdb_00001zcv

1ZCY | pdb_00001zcy

1ZDF | pdb_00001zdf

1ZDG | pdb_00001zdg

1ZLM | pdb_00001zlm

2AX5 | pdb_00002ax5

2F5K | pdb_00002f5k

2HZ6 | pdb_00002hz6

2IHX | pdb_00002ihx

2IS9 | pdb_00002is9