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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "de Caestecker, M.P."

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Search Summary

This query matches 200 Structures.

Refinements

Structure Determination Methodology

experimental (200)

Scientific Name of Source Organism

	Pyrococcus horikoshii OT3 (22)
	Pyrococcus horikoshii (18)
	Gallus gallus (16)
	Homo sapiens (15)
	Escherichia coli K-12 (12)
	Shewanella oneidensis MR-1 (12)
	Arabidopsis thaliana (10)
	Haemophilus influenzae Rd KW20 (7)
	synthetic construct (7)
	Acetivibrio thermocellus (6)

More...

Taxonomy

	Bacteria (92)
	Eukaryota (63)
	Archaea (45)
	other sequences (7)
	Riboviria (2)
	unclassified sequences (1)

Experimental Method

	X-RAY DIFFRACTION (197)
	ELECTRON MICROSCOPY (2)
	SOLUTION NMR (1)

Polymer Entity Type

	Protein (200)
	DNA (9)
	RNA (1)

Refinement Resolution (Å)

	0.5 - 1.0 (3)
	1.0 - 1.5 (15)
	1.5 - 2.0 (87)
	2.0 - 2.5 (59)
	2.5 - 3.0 (29)
	3.0 - 3.5 (6)

Release Date

	2000 - 2004 (17)
	2005 - 2009 (71)
	2010 - 2014 (43)
	2015 - 2019 (53)
	2020 - 2024 (16)

Enzyme Classification Name

	Hydrolases (75)
	Transferases (21)
	Oxidoreductases (26)
	Translocases (17)
	Lyases (10)
	Isomerases (3)
	Ligases (2)

Symmetry Type

	Asymmetric (113)
	Cyclic (89)
	Dihedral (15)

SCOP Classification

	Alpha and beta proteins (a/b) (63)
	All beta proteins (19)
	Artifacts (38)
	Alpha and beta proteins (a+b) (31)
	All alpha proteins (13)

AllSelected

1 to 25 of 200 Structures

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1ION \| pdb_00001ion	Download File View File

THE SEPTUM SITE-DETERMINING PROTEIN MIND COMPLEXED WITH MG-ADP FROM PYROCOCCUS HORIKOSHII OT3

Sakai, N., Yao, M., Itou, H., Watanabe, N., Yumoto, F., Tanokura, M., Tanaka, I.

(2001) Structure 9: 817-826

Released	2001-09-26
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Pyrococcus horikoshii OT3
Macromolecule	PROBABLE CELL DIVISION INHIBITOR MIND (protein)
Unique Ligands	ADP, MG

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1IRJ \| pdb_00001irj	Download File View File

Crystal Structure of the MRP14 complexed with CHAPS

Itou, H., Yao, M., Watanabe, N., Nishihira, J., Tanaka, I.

(2002) J Mol Biology 316: 265-276

Released	2002-02-27
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens
Macromolecule	Migration Inhibitory Factor-Related Protein 14 (protein)
Unique Ligands	CA, CPS

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1IU8 \| pdb_00001iu8	Download File View File

The X-ray Crystal Structure of Pyrrolidone-Carboxylate Peptidase from Hyperthermophilic Archaeon Pyrococcus horikoshii

Sokabe, M., Kawamura, T., Sakai, N., Yao, M., Watanabe, N., Tanaka, I.

(2002) J Struct Funct Genomics 2: 145-154

Released	2002-03-20
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Pyrococcus horikoshii
Macromolecule	Pyrrolidone-carboxylate peptidase (protein)

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1IXK \| pdb_00001ixk	Download File View File

Crystal Structure Analysis of Methyltransferase Homolog Protein from Pyrococcus Horikoshii

Ishikawa, I., Sakai, N., Yao, M., Watanabe, N., Tamura, T., Tanaka, I.

(2004) Proteins 54: 814-816

Released	2003-09-09
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Pyrococcus horikoshii
Macromolecule	Methyltransferase (protein)

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1IXL \| pdb_00001ixl	Download File View File

Crystal structure of uncharacterized protein PH1136 from Pyrococcus horikoshii

Tajika, Y., Sakai, N., Tanaka, Y., Yao, M., Watanabe, N., Tanaka, I.

(2004) Proteins 55: 210-213

Released	2003-09-09
Method	X-RAY DIFFRACTION 1.94 Å
Organisms	Pyrococcus horikoshii
Macromolecule	hypothetical protein PH1136 (protein)

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1J0A \| pdb_00001j0a	Download File View File

Crystal Structure Analysis of the ACC deaminase homologue

Fujino, A., Ose, T., Honma, M., Yao, M., Tanaka, I.

(2004) J Mol Biology 341: 999-1013

Released	2003-05-12
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Pyrococcus horikoshii OT3
Macromolecule	1-aminocyclopropane-1-carboxylate deaminase (protein)
Unique Ligands	IPA, PLP, SO4

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1J0B \| pdb_00001j0b	Download File View File

Crystal Structure Analysis of the ACC deaminase homologue complexed with inhibitor

Fujino, A., Ose, T., Honma, M., Yao, M., Tanaka, I.

(2004) J Mol Biology 341: 999-1013

Released	2003-05-12
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Pyrococcus horikoshii OT3
Macromolecule	1-aminocyclopropane-1-carboxylate deaminase (protein)
Unique Ligands	5PA

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1J0C \| pdb_00001j0c	Download File View File

ACC deaminase mutated to catalytic residue

Ose, T., Fujino, A., Yao, M., Honma, M., Tanaka, I.

(2003) J Biological Chem 278: 41069-41076

Released	2003-05-12
Method	X-RAY DIFFRACTION 2.75 Å
Organisms	Cyberlindnera saturnus
Macromolecule	1-aminocyclopropane-1-carboxylate deaminase (protein)
Unique Ligands	PLP

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1J0D \| pdb_00001j0d	Download File View File

ACC deaminase mutant complexed with ACC

Ose, T., Fujino, A., Yao, M., Honma, M., Tanaka, I.

(2003) J Biological Chem 278: 41069-41076

Released	2003-05-12
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Cyberlindnera saturnus
Macromolecule	1-aminocyclopropane-1-carboxylate deaminase (protein)
Unique Ligands	5PA

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1J0E \| pdb_00001j0e	Download File View File

ACC deaminase mutant reacton intermediate

Ose, T., Fujino, A., Yao, M., Honma, M., Tanaka, I.

(2003) J Biological Chem 278: 41069-41076

Released	2003-05-12
Method	X-RAY DIFFRACTION 2.45 Å
Organisms	Cyberlindnera saturnus
Macromolecule	1-aminocyclopropane-1-carboxylate deaminase (protein)
Unique Ligands	1AC

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1J31 \| pdb_00001j31	Download File View File

Crystal Structure of Hypothetical Protein PH0642 from Pyrococcus horikoshii

Sakai, N., Tajika, Y., Yao, M., Watanabe, N., Tanaka, I.

(2004) Proteins 57: 869-873

Released	2004-03-09
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Pyrococcus horikoshii OT3
Macromolecule	Hypothetical protein PH0642 (protein)
Unique Ligands	ACT

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1UB9 \| pdb_00001ub9	Download File View File

Structure of the transcriptional regulator homologue protein from Pyrococcus horikoshii OT3

Okada, U., Sakai, N., Tajika, Y., Yao, M., Watanabe, N., Tanaka, I.

(2006) Proteins 63: 1084-1086

Released	2004-05-04
Method	X-RAY DIFFRACTION 2.05 Å
Organisms	Pyrococcus horikoshii OT3
Macromolecule	Hypothetical protein PH1061 (protein)

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1UDD \| pdb_00001udd	Download File View File

TenA homologue protein from P.horikoshii OT3

Itou, H., Yao, M., Watanabe, N., Tanaka, I.

(2004) Acta Crystallogr D Biol Crystallogr 60: 1094-1100

Released	2004-06-01
Method	X-RAY DIFFRACTION 2.15 Å
Organisms	Pyrococcus horikoshii OT3
Macromolecule	transcriptional regulator (protein)

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1ULY \| pdb_00001uly	Download File View File

Crystal structure analysis of the ArsR homologue DNA-binding protein from P. horikoshii OT3

Itou, H., Yao, M., Watanabe, N., Tanaka, I.

(2008) Proteins 70: 1631-1634

Released	2004-10-19
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Pyrococcus horikoshii OT3
Macromolecule	hypothetical protein PH1932 (protein)

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1V30 \| pdb_00001v30	Download File View File

Crystal Structure Of Uncharacterized Protein PH0828 From Pyrococcus horikoshii

Tajika, Y., Sakai, N., Yao, M., Watanabe, N., Tanaka, I.

(2004) Proteins 57: 862-865

Released	2004-11-09
Method	X-RAY DIFFRACTION 1.4 Å
Organisms	Pyrococcus horikoshii
Macromolecule	Hypothetical UPF0131 protein PH0828 (protein)
Unique Ligands	NHE

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1V43 \| pdb_00001v43	Download File View File

Crystal Structure of ATPase subunit of ABC Sugar Transporter

Ose, T., Fujie, T., Yao, M., Watanabe, N., Tanaka, I.

(2004) Proteins 57: 635-638

Released	2004-11-16
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Pyrococcus horikoshii
Macromolecule	sugar-binding transport ATP-binding protein (protein)

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1V4N \| pdb_00001v4n	Download File View File

Structure of 5'-deoxy-5'-methylthioadenosine phosphorylase homologue from Sulfolobus tokodaii

Kitago, Y., Yasutake, Y., Sakai, N., Tsujimura, M., Yao, M., Watanabe, N., Kawarabayasi, Y., Tanaka, I.

To be published

Released	2005-01-04
Method	X-RAY DIFFRACTION 2.45 Å
Organisms	Sulfurisphaera tokodaii
Macromolecule	271aa long hypothetical 5'-methylthioadenosine phosphorylase (protein)

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1VAJ \| pdb_00001vaj	Download File View File

Crystal Structure of Uncharacterized Protein PH0010 From Pyrococcus horikoshii

Tajika, Y., Sakai, N., Tamura, T., Yao, M., Watanabe, N., Tanaka, I.

(2005) Proteins 58: 501-503

Released	2005-01-25
Method	X-RAY DIFFRACTION 1.82 Å
Organisms	Pyrococcus horikoshii
Macromolecule	Hypothetical protein PH0010 (protein)

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1VCI \| pdb_00001vci	Download File View File

Crystal structure of the ATP-binding cassette of multisugar transporter from Pyrococcus horikoshii OT3 complexed with ATP

Ose, T., Fujie, T., Yao, M., Watanabe, N., Tanaka, I.

(2004) Proteins 57: 635-638

Released	2004-12-14
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Pyrococcus horikoshii
Macromolecule	sugar-binding transport ATP-binding protein (protein)
Unique Ligands	ATP

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1VDZ \| pdb_00001vdz	Download File View File

Crystal structure of A-type ATPase catalytic subunit A from Pyrococcus horikoshii OT3

Maegawa, Y., Morita, H., Yao, M., Watanabe, N., Tanaka, I.

To be published

Released	2005-06-21
Method	X-RAY DIFFRACTION 2.55 Å
Organisms	Pyrococcus horikoshii
Macromolecule	A-type ATPase subunit A (protein)
Unique Ligands	MPD

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1WE5 \| pdb_00001we5	Download File View File

Crystal Structure of Alpha-Xylosidase from Escherichia coli

Ose, T., Kitamura, M., Okuyama, M., Mori, H., Kimura, A., Watanabe, N., Yao, M., Tanaka, I.

To be published

Released	2005-02-15
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Escherichia coli
Macromolecule	Putative family 31 glucosidase yicI (protein)
Unique Ligands	MES

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1WLT \| pdb_00001wlt	Download File View File

Crystal Structure of dTDP-4-dehydrorhamnose 3,5-epimerase homologue from Sulfolobus tokodaii

Watanabe, N., Sakai, N., Zilian, Z., Kawarabayasi, Y., Tanaka, I.

To be published

Released	2005-07-26
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Sulfurisphaera tokodaii
Macromolecule	176aa long hypothetical dTDP-4-dehydrorhamnose 3,5-epimerase (protein)

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1WQA \| pdb_00001wqa	Download File View File

Crystal Structure of Pyrococcus horikoshii phosphomannomutase/phosphoglucomutase complexed with Mg2+

Kawamura, T., Tsuge, M., Watanabe, N., Tanaka, I.

To be published

Released	2005-10-04
Method	X-RAY DIFFRACTION 2 Å
Organisms	Pyrococcus horikoshii
Macromolecule	phospho-sugar mutase (protein)
Unique Ligands	MG

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1WU7 \| pdb_00001wu7	Download File View File

Crystal structure of histidyl-tRNA synthetase from Thermoplasma acidophilum

Tanaka, Y., Sakai, N., Yao, M., Watanabe, N., Tamura, T., Tanaka, I.

To be published

Released	2005-12-06
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Thermoplasma acidophilum
Macromolecule	Histidyl-tRNA synthetase (protein)

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1WV3 \| pdb_00001wv3	Download File View File

Crystal structure of N-terminal domain of hypothetical protein SAV0287 from Staphylococcus aureus

Tanaka, Y., Yasutake, Y., Tanaka, I.

(2007) Proteins 69: 659-664

Released	2005-12-20
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Staphylococcus aureus subsp. aureus Mu50
Macromolecule	similar to DNA segregation ATPase and related proteins (protein)
Unique Ligands	CL

1 to 25 of 200 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

1ION | pdb_00001ion

1IRJ | pdb_00001irj

1IU8 | pdb_00001iu8

1IXK | pdb_00001ixk

1IXL | pdb_00001ixl

1J0A | pdb_00001j0a

1J0B | pdb_00001j0b

1J0C | pdb_00001j0c

1J0D | pdb_00001j0d

1J0E | pdb_00001j0e

1J31 | pdb_00001j31

1UB9 | pdb_00001ub9

1UDD | pdb_00001udd

1ULY | pdb_00001uly

1V30 | pdb_00001v30

1V43 | pdb_00001v43

1V4N | pdb_00001v4n

1VAJ | pdb_00001vaj

1VCI | pdb_00001vci

1VDZ | pdb_00001vdz

1WE5 | pdb_00001we5

1WLT | pdb_00001wlt

1WQA | pdb_00001wqa

1WU7 | pdb_00001wu7

1WV3 | pdb_00001wv3