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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: BIRD ID(s) = PRD_900009

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Search Summary

This query matches 95 Structures.

Refinements

Structure Determination Methodology

experimental (95)

Scientific Name of Source Organism

	Homo sapiens (11)
	Escherichia coli (9)
	Escherichia coli K-12 (7)
	Niallia circulans (7)
	Crocosphaera subtropica ATCC 51142 (5)
	Klebsiella pneumoniae (3)
	Paenibacillus barengoltzii (3)
	Alicyclobacillus acidocaldarius (2)
	Bacillus sp. (in: firmicutes) (2)
	Bacillus sp. 707 (2)

More...

Taxonomy

	Bacteria (78)
	Eukaryota (23)
	Archaea (3)
	Monodnaviria (1)
	unclassified sequences (1)

Experimental Method

X-RAY DIFFRACTION (95)

Polymer Entity Type

Protein (95)

Refinement Resolution (Å)

	1.0 - 1.5 (7)
	1.5 - 2.0 (37)
	2.0 - 2.5 (39)
	2.5 - 3.0 (8)
	3.0 - 3.5 (4)

Release Date

	1995 - 1999 (4)
	2000 - 2004 (14)
	2005 - 2009 (17)
	2010 - 2014 (18)
	2015 - 2019 (29)
	2020 - 2024 (13)

Enzyme Classification Name

	Hydrolases (33)
	Transferases (24)

Membrane Protein Annotation

	MemProtMD (2)
	PDBTM (2)
	mpstruc (2)

Symmetry Type

	Asymmetric (85)
	Cyclic (12)
	Dihedral (1)

SCOP Classification

	All beta proteins (29)
	Alpha and beta proteins (a/b) (38)
	Artifacts (5)
	Membrane and cell surface proteins and peptides (2)
	All alpha proteins (2)
	Alpha and beta proteins (a+b) (1)
	Coiled coil proteins (1)
	Multi-domain proteins (alpha and beta) (1)

AllSelected

1 to 25 of 95 Structures

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1A47 \| pdb_00001a47	Download File View File

CGTASE FROM THERMOANAEROBACTERIUM THERMOSULFURIGENES EM1 IN COMPLEX WITH A MALTOHEXAOSE INHIBITOR

Uitdehaag, J.C.M., Kalk, K.H., Rozeboom, H.J., Dijkstra, B.W.

(1998) J Biological Chem 273: 5771-5779

Released	1998-06-17
Method	X-RAY DIFFRACTION 2.56 Å
Organisms	Thermoanaerobacterium thermosulfurigenes
Macromolecule	CYCLODEXTRIN GLYCOSYLTRANSFERASE (protein)
Unique Ligands	ADH, CA
Unique branched monosaccharides	G6D, GLC

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1DTU \| pdb_00001dtu	Download File View File

BACILLUS CIRCULANS STRAIN 251 CYCLODEXTRIN GLYCOSYLTRANSFERASE: A MUTANT Y89D/S146P COMPLEXED TO AN HEXASACCHARIDE INHIBITOR

Uitdehaag, J.C.M., Kalk, K.H., Dijkstra, B.W.

(2000) J Mol Biology 296: 1027-1038

Released	2000-03-06
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Niallia circulans
Macromolecule	PROTEIN (CYCLODEXTRIN GLYCOSYLTRANSFERASE) (protein)
Unique Ligands	ADH, CA
Unique branched monosaccharides	BGC, G6D, GLC

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1E40 \| pdb_00001e40	Download File View File

Tris/maltotriose complex of chimaeric amylase from B. amyloliquefaciens and B. licheniformis at 2.2A

Brzozowski, A.M., Lawson, D.M., Turkenburg, J.P., Bisgaard-Frantzen, H., Svendsen, A., Borchert, T.V., Dauter, Z., Wilson, K.S., Davies, G.J.

(2000) Biochemistry 39: 9099

Released	2001-06-21
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Bacillus amyloliquefaciens
Macromolecule	ALPHA-AMYLASE (protein)
Unique Ligands	CA, NA, TRS
Unique branched monosaccharides	GLC

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1ELJ \| pdb_00001elj	Download File View File

THE CRYSTAL STRUCTURE OF LIGANDED MALTODEXTRIN-BINDING PROTEIN FROM PYROCOCCUS FURIOSUS

Evdokimov, A.G., Anderson, E.D., Routzahn, K.M., Waugh, D.S.

(2001) J Mol Biology 305: 891-904

Released	2001-01-19
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Pyrococcus furiosus
Macromolecule	MALTODEXTRIN-BINDING PROTEIN (protein)
Unique Ligands	SO4
Unique branched monosaccharides	GLC

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1EO5 \| pdb_00001eo5	Download File View File

Bacillus circulans strain 251 cyclodextrin glycosyltransferase in complex with maltoheptaose

Uitdehaag, J.C.M., Dijkstra, B.W.

(2000) Biochemistry 39: 7772-7780

Released	2000-11-22
Method	X-RAY DIFFRACTION 2 Å
Organisms	Niallia circulans
Macromolecule	PROTEIN (CYCLODEXTRIN GLYCOSYLTRANSFERASE) (protein)
Unique Ligands	CA, MPD
Unique branched monosaccharides	BGC, GLC

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1EO7 \| pdb_00001eo7	Download File View File

BACILLUS CIRCULANS STRAIN 251 CYCLODEXTRIN GLYCOSYLTRANSFERASE IN COMPLEX WITH MALTOHEXAOSE

Uitdehaag, J.C.M., Dijkstra, B.W.

(2000) Biochemistry 39: 7772-7780

Released	2000-11-22
Method	X-RAY DIFFRACTION 2.48 Å
Organisms	Niallia circulans
Macromolecule	PROTEIN (CYCLODEXTRIN GLYCOSYLTRANSFERASE) (protein)
Unique Ligands	CA
Unique branched monosaccharides	GLC

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1FBW \| pdb_00001fbw	Download File View File

Crystal structure of the cellulase CEL48F from C. cellulolyticum in complex with cellohexaose

Parsiegla, G., Reverbel-Leroy, C., Tardif, C., Belaich, J.P., Driguez, H., Haser, R.

(2000) Biochemistry 39: 11238-11246

Released	2000-08-02
Method	X-RAY DIFFRACTION 2 Å
Organisms	Ruminiclostridium cellulolyticum
Macromolecule	ENDO-1,4-BETA-GLUCANASE F (protein)
Unique Ligands	CA
Unique branched monosaccharides	GLC

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1ITC \| pdb_00001itc	Download File View File

Beta-Amylase from Bacillus cereus var. mycoides Complexed with Maltopentaose

Miyake, H., Kurisu, G., Kusunoki, M., Nishimura, S., Kitamura, S., Nitta, Y.

(2003) Biochemistry 42: 5574-5581

Released	2003-05-27
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Bacillus cereus
Macromolecule	Beta-Amylase (protein)
Unique Ligands	ACY, CA, SO4
Unique branched monosaccharides	GLC

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1KCK \| pdb_00001kck	Download File View File

Bacillus circulans strain 251 Cyclodextrin glycosyl transferase mutant N193G

Rozeboom, H.J., Uitdehaag, J.C.M., Dijkstra, B.W.

(2002) J Biological Chem 277: 1113-1119

Released	2002-01-16
Method	X-RAY DIFFRACTION 2.43 Å
Organisms	Niallia circulans
Macromolecule	CYCLODEXTRIN GLYCOSYLTRANSFERASE (protein)
Unique Ligands	ADH, CA, GLC
Unique branched monosaccharides	BGC, G6D, GLC

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1MPN \| pdb_00001mpn	Download File View File

MALTOPORIN MALTOTRIOSE COMPLEX

Dutzler, R., Schirmer, T.

(1996) Structure 4: 127-134

Released	1997-03-12
Method	X-RAY DIFFRACTION 3.2 Å
Organisms	Escherichia coli
Macromolecule	MALTOPORIN (protein)
Unique Ligands	MG
Unique branched monosaccharides	GLC

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1PEZ \| pdb_00001pez	Download File View File

Bacillus circulans strain 251 mutant A230V

Rozeboom, H.J., Dijkstra, B.W.

(2003) Biochemistry 42: 7518-7526

Released	2003-10-28
Method	X-RAY DIFFRACTION 2.32 Å
Organisms	Niallia circulans
Macromolecule	Cyclomaltodextrin glucanotransferase (protein)
Unique Ligands	ACY, CA, EPE, MPD
Unique branched monosaccharides	BGC, GLC

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1PJ9 \| pdb_00001pj9	Download File View File

Bacillus circulans strain 251 loop mutant 183-195

Rozeboom, H.J., Dijkstra, B.W.

(2004) Proteins 54: 128-134

Released	2004-02-03
Method	X-RAY DIFFRACTION 2 Å
Organisms	Niallia circulans
Macromolecule	Cyclomaltodextrin glucanotransferase (protein)
Unique Ligands	ACY, CA, GLC, MPD
Unique branched monosaccharides	GLC

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1UA3 \| pdb_00001ua3	Download File View File

Crystal structure of the pig pancreatic a-amylase complexed with malto-oligosaccharides

Payan, F., Qian, M.

(2003) J Protein Chem 22: 275-284

Released	2003-10-14
Method	X-RAY DIFFRACTION 2.01 Å
Organisms	Sus scrofa
Macromolecule	Alpha-amylase, pancreatic (protein)
Unique Ligands	BGC, CA, CL, EDO
Unique branched monosaccharides	GLC

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1UH4 \| pdb_00001uh4	Download File View File

Thermoactinomyces vulgaris R-47 alpha-amylase 1/malto-tridecaose complex

Abe, A., Tonozuka, T., Sakano, Y., Kamitori, S.

(2004) J Mol Biology 335: 811-822

Released	2004-01-13
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Thermoactinomyces vulgaris
Macromolecule	alpha-amylase I (protein)
Unique Ligands	CA, GLC, MPD
Unique branched monosaccharides	BGC, GLC

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1URD \| pdb_00001urd	Download File View File

X-ray structures of the maltose-maltodextrin binding protein of the thermoacidophilic bacterium Alicyclobacillus acidocaldarius provide insight into acid stability of proteins

Schafer, K., Magnusson, U., Scheffel, F., Schiefner, A., Sandgren, M.O.J., Diederichs, K., Welte, W., Hulsmann, A., Schneider, E., Mowbray, S.L.

(2004) J Mol Biology 335: 261

Released	2003-12-11
Method	X-RAY DIFFRACTION 1.53 Å
Organisms	Alicyclobacillus acidocaldarius
Macromolecule	MALTOSE-BINDING PROTEIN (protein)
Unique branched monosaccharides	GLC

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1URS \| pdb_00001urs	Download File View File

X-ray structures of the maltose-maltodextrin binding protein of the thermoacidophilic bacterium Alicyclobacillus acidocaldarius

Schafer, K., Magnusson, U., Scheffel, F., Schiefner, A., Sandgren, M.O.J., Diederichs, K., Welte, W., Hulsmann, A., Schneider, E., Mowbray, S.L.

(2004) J Mol Biology 335: 261

Released	2003-12-11
Method	X-RAY DIFFRACTION 1.45 Å
Organisms	Alicyclobacillus acidocaldarius
Macromolecule	MALTOSE-BINDING PROTEIN (protein)
Unique branched monosaccharides	GLC

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1ZS2 \| pdb_00001zs2	Download File View File

Amylosucrase Mutant E328Q in a ternary complex with sucrose and maltoheptaose

Skov, L.K., Mirza, O., Sprogoe, D., van der Veen, B.A., Remaud-Simeon, M., Albenne, C., Monsan, P., Gajhede, M.

(2006) Biocatal Biotransformation 24: 99-105

Released	2006-05-02
Method	X-RAY DIFFRACTION 2.16 Å
Organisms	Neisseria polysaccharea
Macromolecule	amylosucrase (protein)
Unique branched monosaccharides	FRU, GLC

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2C3W \| pdb_00002c3w	Download File View File

Structure of CBM25 from Bacillus halodurans amylase in complex with maltotetraose

Boraston, A.B., Healey, M., Klassen, J., Ficko-Blean, E., Lammerts van Bueren, A., Law, V.

(2006) J Biological Chem 281: 587

Released	2005-10-17
Method	X-RAY DIFFRACTION 1.81 Å
Organisms	Halalkalibacterium halodurans C-125
Macromolecule	ALPHA-AMYLASE G-6 (protein)
Unique Ligands	SO4
Unique branched monosaccharides	GLC

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2D3L \| pdb_00002d3l	Download File View File

Crystal structure of maltohexaose-producing amylase from Bacillus sp.707 complexed with maltopentaose.

Kanai, R., Haga, K., Akiba, T., Yamane, K., Harata, K.

(2006) Protein Sci 15: 468-477

Released	2006-03-14
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Bacillus sp. 707
Macromolecule	Glucan 1,4-alpha-maltohexaosidase (protein)
Unique Ligands	CA, GLC, NA
Unique branched monosaccharides	GLC

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2D3N \| pdb_00002d3n	Download File View File

Crystal structure of maltohexaose-producing amylase from Bacillus sp.707 complexed with maltohexaose

Kanai, R., Haga, K., Akiba, T., Yamane, K., Harata, K.

(2006) Protein Sci 15: 468-477

Released	2006-03-14
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Bacillus sp. 707
Macromolecule	Glucan 1,4-alpha-maltohexaosidase (protein)
Unique Ligands	CA, GLC, NA
Unique branched monosaccharides	GLC

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2DIJ \| pdb_00002dij	Download File View File

COMPLEX OF A Y195F MUTANT CGTASE FROM B. CIRCULANS STRAIN 251 COMPLEXED WITH A MALTONONAOSE INHIBITOR AT PH 9.8 OBTAINED AFTER SOAKING THE CRYSTAL WITH ACARBOSE AND MALTOHEXAOSE

Strokopytov, B.V., Knegtel, R.M.A., Uitdehaag, J.C.M., Dijkstra, B.W.

(1996) Biochemistry 35: 4241-4249

Released	1998-12-09
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Niallia circulans
Macromolecule	CYCLODEXTRIN GLYCOSYLTRANSFERASE (protein)
Unique Ligands	ADH, CA
Unique branched monosaccharides	G6D, GLC

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2E9B \| pdb_00002e9b	Download File View File

Crystal structure of pullulanase type I from Bacillus subtilis str. 168 complexed with maltose

Mikami, B., Malle, D., Utsumi, S., Iwamoto, H., Katsuya, Y.

To be published

Released	2008-02-19
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Bacillus subtilis
Macromolecule	AmyX protein (protein)
Unique Ligands	ACT, CA, GOL
Unique branched monosaccharides	BGC, GLC

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2FHC \| pdb_00002fhc	Download File View File

Crystal Structure Analysis of Klebsiella pneumoniae pullulanase complexed with maltotriose

Mikami, B., Iwamoto, H., Katsuya, Y., Yoon, H.-J., Demirkan-Sarikaya, E., Malle, D.

(2006) J Mol Biology 359: 690-707

Released	2006-06-13
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Klebsiella pneumoniae
Macromolecule	Alpha-dextrin endo-1,6-alpha-glucosidase (protein)
Unique Ligands	CA
Unique branched monosaccharides	GLC

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2FNC \| pdb_00002fnc	Download File View File

Thermotoga maritima maltotriose binding protein bound with maltotriose.

Cuneo, M.J., Changela, A.

To be published

Released	2007-01-16
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Thermotoga maritima MSB8
Macromolecule	maltose ABC transporter, periplasmic maltose-binding protein (protein)
Unique branched monosaccharides	GLC

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2GGU \| pdb_00002ggu	Download File View File

crystal structure of the trimeric neck and carbohydrate recognition domain of human surfactant protein D in complex with maltotriose

Head, J.F.

(2006) J Biological Chem 281: 18008-18014

Released	2006-05-02
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Homo sapiens
Macromolecule	Pulmonary surfactant-associated protein D (protein)
Unique Ligands	CA
Unique branched monosaccharides	GLC

1 to 25 of 95 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1A47 | pdb_00001a47

1DTU | pdb_00001dtu

1E40 | pdb_00001e40

1ELJ | pdb_00001elj

1EO5 | pdb_00001eo5

1EO7 | pdb_00001eo7

1FBW | pdb_00001fbw

1ITC | pdb_00001itc

1KCK | pdb_00001kck

1MPN | pdb_00001mpn

1PEZ | pdb_00001pez

1PJ9 | pdb_00001pj9

1UA3 | pdb_00001ua3

1UH4 | pdb_00001uh4

1URD | pdb_00001urd

1URS | pdb_00001urs

1ZS2 | pdb_00001zs2

2C3W | pdb_00002c3w

2D3L | pdb_00002d3l

2D3N | pdb_00002d3n

2DIJ | pdb_00002dij

2E9B | pdb_00002e9b

2FHC | pdb_00002fhc

2FNC | pdb_00002fnc

2GGU | pdb_00002ggu