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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: BIRD ID(s) = PRD_900012

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Search Summary

This query matches 43 Structures.

Refinements

Structure Determination Methodology

experimental (43)

Scientific Name of Source Organism

	Homo sapiens (11)
	Thermoactinomyces vulgaris (4)
	Rattus norvegicus (3)
	Aspergillus niger (2)
	Escherichia coli (2)
	Klebsiella pneumoniae (2)
	Staphylococcus aureus (2)
	Bacillus licheniformis (1)
	Bacteroides thetaiotaomicron VPI-5482 (1)
	Escherichia coli O139:H28 str. E24377A (1)

More...

Taxonomy

	Bacteria (22)
	Eukaryota (20)
	Archaea (1)

Experimental Method

	X-RAY DIFFRACTION (41)
	SOLUTION NMR (2)

Polymer Entity Type

Protein (43)

Refinement Resolution (Å)

	0.5 - 1.0 (1)
	1.0 - 1.5 (2)
	1.5 - 2.0 (12)
	2.0 - 2.5 (11)
	2.5 - 3.0 (9)
	3.0 - 3.5 (4)
	3.5 - 4.0 (1)
	4.0 - 4.5 (1)

Release Date

	1990 - 1994 (1)
	1995 - 1999 (4)
	2000 - 2004 (3)
	2005 - 2009 (11)
	2010 - 2014 (10)
	2015 - 2019 (8)
	2020 - 2024 (6)

Enzyme Classification Name

	Hydrolases (15)
	Oxidoreductases (7)
	Transferases (6)

Membrane Protein Annotation

	mpstruc (3)
	MemProtMD (2)
	OPM (2)
	PDBTM (1)

Symmetry Type

	Asymmetric (32)
	Cyclic (12)

SCOP Classification

	All beta proteins (17)
	Alpha and beta proteins (a/b) (14)
	All alpha proteins (8)
	Artifacts (5)
	Membrane and cell surface proteins and peptides (2)

AllSelected

1 to 25 of 43 Structures

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1AC0 \| pdb_00001ac0	Download File View File

GLUCOAMYLASE, GRANULAR STARCH-BINDING DOMAIN COMPLEX WITH CYCLODEXTRIN, NMR, MINIMIZED AVERAGE STRUCTURE

Sorimachi, K., Le Gal-Coeffet, M.-F., Williamson, G., Archer, D.B., Williamson, M.P.

(1997) Structure 5: 647-661

Released	1997-07-07
Method	SOLUTION NMR
Organisms	Aspergillus niger
Macromolecule	GLUCOAMYLASE (protein)
Unique branched monosaccharides	GLC

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1ACZ \| pdb_00001acz	Download File View File

GLUCOAMYLASE, GRANULAR STARCH-BINDING DOMAIN COMPLEX WITH CYCLODEXTRIN, NMR, 5 STRUCTURES

Sorimachi, K., Le Gal-Coeffet, M.-F., Williamson, G., Archer, D.B., Williamson, M.P.

(1997) Structure 5: 647-661

Released	1997-07-07
Method	SOLUTION NMR
Organisms	Aspergillus niger
Macromolecule	GLUCOAMYLASE (protein)
Unique branched monosaccharides	GLC

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1BFN \| pdb_00001bfn	Download File View File

BETA-AMYLASE/BETA-CYCLODEXTRIN COMPLEX

Adachi, M., Mikami, B., Katsube, T., Utsumi, S.

(1998) J Biological Chem 273: 19859-19865

Released	1998-10-28
Method	X-RAY DIFFRACTION 2.07 Å
Organisms	Glycine max
Macromolecule	BETA-AMYLASE (protein)
Unique Ligands	SO4
Unique branched monosaccharides	GLC

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1DMB \| pdb_00001dmb	Download File View File

REFINED 1.8 ANGSTROMS STRUCTURE REVEALS THE MECHANISM OF BINDING OF A CYCLIC SUGAR, BETA-CYCLODEXTRIN, TO THE MALTODEXTRIN BINDING PROTEIN

Sharff, A.J., Quiocho, F.A.

(1993) Biochemistry 32: 10553-10559

Released	1993-10-31
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Escherichia coli
Macromolecule	D-MALTODEXTRIN BINDING PROTEIN (protein)
Unique branched monosaccharides	GLC

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1G1Y \| pdb_00001g1y	Download File View File

CRYSTAL STRUCTURE OF ALPHA-AMYLASE II (TVAII) FROM THERMOACTINOMYCES VULGARIS R-47 AND BETA-CYCLODEXTRIN COMPLEX

Kondo, S., Ohtaki, A., Tonozuka, T., Sakano, Y., Kamitori, S.

(2001) J Biochem 129: 423-428

Released	2001-03-14
Method	X-RAY DIFFRACTION 3 Å
Organisms	Thermoactinomyces vulgaris
Macromolecule	ALPHA-AMYLASE II (protein)
Unique branched monosaccharides	GLC

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1GVI \| pdb_00001gvi	Download File View File

Thermus maltogenic amylase in complex with beta-CD

Kim, M.-S., Kim, J.-I., Oh, B.-H.

(2002) J Biological Chem 277: 21891

Released	2002-06-06
Method	X-RAY DIFFRACTION 3.3 Å
Organisms	Thermus sp.
Macromolecule	MALTOGENIC AMYLASE (protein)
Unique branched monosaccharides	GLC

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1JL8 \| pdb_00001jl8	Download File View File

Complex of alpha-amylase II (TVA II) from Thermoactinomyces vulgaris R-47 with beta-cyclodextrin based on a co-crystallization with methyl beta-cyclodextrin

Yokota, T., Tonozuka, T., Shimura, Y., Ichikawa, K., Kamitori, S., Sakano, Y.

(2001) Biosci Biotechnol Biochem 65: 619-626

Released	2001-08-01
Method	X-RAY DIFFRACTION 3.2 Å
Organisms	Thermoactinomyces vulgaris
Macromolecule	ALPHA-AMYLASE II (protein)
Unique branched monosaccharides	GLC

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1VFO \| pdb_00001vfo	Download File View File

Crystal structure of Thermoactinomyces vulgaris R-47 alpha-amylase 2/beta-cyclodextrin complex

Ohtaki, A., Mizuno, M., Tonozuka, T., Sakano, Y., Kamitori, S.

(2004) J Biological Chem 279: 31033-31040

Released	2005-02-08
Method	X-RAY DIFFRACTION 2.81 Å
Organisms	Thermoactinomyces vulgaris
Macromolecule	Neopullulanase 2 (protein)
Unique Ligands	CA
Unique branched monosaccharides	BGC, GLC

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1Z0M \| pdb_00001z0m	Download File View File

the glycogen-binding domain of the AMP-activated protein kinase beta1 subunit

Polekhina, G., Gupta, A., van Denderen, B.J., Feil, S.C., Kemp, B.E., Stapleton, D., Parker, M.W.

(2005) Structure 13: 1453-1462

Released	2005-10-25
Method	X-RAY DIFFRACTION 1.91 Å
Organisms	Rattus norvegicus
Macromolecule	5'-AMP-activated protein kinase, beta-1 subunit (protein)
Unique branched monosaccharides	GLC

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1Z0N \| pdb_00001z0n	Download File View File

the glycogen-binding domain of the AMP-activated protein kinase

Polekhina, G., Gupta, A., van Denderen, B.J., Feil, S.C., Kemp, B.E., Stapleton, D., Parker, M.W.

(2005) Structure 13: 1453-1462

Released	2005-10-25
Method	X-RAY DIFFRACTION 1.49 Å
Organisms	Rattus norvegicus
Macromolecule	5'-AMP-activated protein kinase, beta-1 subunit (protein)
Unique branched monosaccharides	GLC

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2V8L \| pdb_00002v8l	Download File View File

Carbohydrate-binding of the starch binding domain of Rhizopus oryzae glucoamylase in complex with beta-cyclodextrin and maltoheptaose

Tung, J.-Y., Liu, Y.-Y., Sun, Y.-J.

(2008) Biochem J 416: 27

Released	2008-08-19
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Rhizopus arrhizus
Macromolecule	GLUCOAMYLASE A (protein)
Unique Ligands	ZN
Unique branched monosaccharides	GLC

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2Y4S \| pdb_00002y4s	Download File View File

BARLEY LIMIT DEXTRINASE IN COMPLEX WITH BETA-CYCLODEXTRIN

Vester-Christensen, M.B., Hachem, M.A., Svensson, B., Henriksen, A.

(2010) J Mol Biology 403: 739

Released	2011-01-19
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Hordeum vulgare
Macromolecule	LIMIT DEXTRINASE (protein)
Unique Ligands	CA, GOL, IOD
Unique branched monosaccharides	GLC

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2Z1K \| pdb_00002z1k	Download File View File

Crystal Structure of Ttha1563 from Thermus thermophilus HB8

Niwa, H., Shimada, A., Matsunaga, E., Kuramitsu, S., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

To be published

Released	2008-05-13
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Thermus thermophilus HB8
Macromolecule	(Neo)pullulanase (protein)
Unique Ligands	PO4
Unique branched monosaccharides	GLC

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2ZYN \| pdb_00002zyn	Download File View File

Crystal structure of cyclo/maltodextrin-binding protein complexed with beta-cyclodextrin

Matsumoto, M., Yamada, M., Kurakata, Y., Yoshida, H., Kamitori, S., Nishikawa, A., Tonozuka, T.

(2009) FEBS J 276: 3008-3019

Released	2009-03-31
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Thermoactinomyces vulgaris
Macromolecule	Solute-binding protein (protein)
Unique branched monosaccharides	GLC

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3C6G \| pdb_00003c6g	Download File View File

Crystal structure of CYP2R1 in complex with vitamin D3

Strushkevich, N.V., Min, J., Loppnau, P., Tempel, W., Arrowsmith, C.H., Edwards, A.M., Sundstrom, M., Weigelt, J., Bochkarev, A., Plotnikov, A.N., Park, H., Structural Genomics Consortium (SGC)

(2008) J Mol Biology 380: 95-106

Released	2008-02-19
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Homo sapiens
Macromolecule	Cytochrome P450 2R1 (protein)
Unique Ligands	HEM, UNX, VD3
Unique branched monosaccharides	GLC

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3CGT \| pdb_00003cgt	Download File View File

STRUCTURE OF CYCLODEXTRIN GLYCOSYLTRANSFERASE COMPLEXED WITH ITS MAIN PRODUCT BETA-CYCLODEXTRIN

Schmidt, A.K., Schulz, G.E.

(1998) Biochemistry 37: 5909-5915

Released	1998-05-27
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Niallia circulans
Macromolecule	CYCLODEXTRIN GLYCOSYLTRANSFERASE (protein)
Unique Ligands	CA
Unique branched monosaccharides	GLC

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3CK8 \| pdb_00003ck8	Download File View File

B. thetaiotaomicron SusD with beta-cyclodextrin

Koropatkin, N.M., Martens, E.C., Gordon, J.I., Smith, T.J.

(2008) Structure 16: 1105-1115

Released	2008-04-01
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Bacteroides thetaiotaomicron VPI-5482
Macromolecule	SusD (protein)
Unique Ligands	CA, EDO
Unique branched monosaccharides	GLC

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3CZH \| pdb_00003czh	Download File View File

Crystal structure of CYP2R1 in complex with vitamin D2

Strushkevich, N.V., Tempel, W., Gilep, A.A., Loppnau, P., Arrowsmith, C.H., Edwards, A.M., Bountra, C., Wilkstrom, M., Bochkarev, A., Park, H., Structural Genomics Consortium (SGC)

To be published

Released	2008-08-05
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Homo sapiens
Macromolecule	Cytochrome P450 2R1 (protein)
Unique Ligands	D2V, HEM, UNX
Unique branched monosaccharides	GLC

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3DL9 \| pdb_00003dl9	Download File View File

Crystal structure of CYP2R1 in complex with 1-alpha-hydroxy-vitamin D2

Strushkevich, N.V., Tempel, W., Gilep, A.A., Loppnau, P., Arrowsmith, C.H., Edwards, A.M., Bountra, C., Wilkstrom, M., Bochkarev, A., Park, H., Structural Genomics Consortium (SGC)

To be published

Released	2008-08-05
Method	X-RAY DIFFRACTION 2.721 Å
Organisms	Homo sapiens
Macromolecule	Cytochrome P450 2R1 (protein)
Unique Ligands	HEM, V2H
Unique branched monosaccharides	GLC

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3EDJ \| pdb_00003edj	Download File View File

Structural base for cyclodextrin hydrolysis

Buedenbender, S., Schulz, G.E.

(2009) J Mol Biology 385: 606-617

Released	2009-03-03
Method	X-RAY DIFFRACTION 1.69 Å
Organisms	Flavobacterium sp. 92
Macromolecule	Cyclomaltodextrinase (protein)
Unique Ligands	CA, GOL
Unique branched monosaccharides	GLC

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3JUS \| pdb_00003jus	Download File View File

Crystal structure of human lanosterol 14alpha-demethylase (CYP51) in complex with econazole

Strushkevich, N., MacKenzie, F., Arrowsmith, C.H., Edwards, A.M., Bountra, C., Weigelt, J., Usanov, S.A., Park, H., Structural Genomics Consortium (SGC)

(2010) J Mol Biology 397: 1067-1078

Released	2010-03-02
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Homo sapiens
Macromolecule	Lanosterol 14-alpha demethylase (protein)
Unique Ligands	ECL, ECN, HEM
Unique branched monosaccharides	GLC

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3JUV \| pdb_00003juv	Download File View File

Crystal structure of human lanosterol 14alpha-demethylase (CYP51)

Strushkevich, N., MacKenzie, F., Arrowsmith, C.H., Edwards, A.M., Bountra, C., Weigelt, J., Usanov, S.A., Park, H., Structural Genomics Consortium (SGC)

(2010) J Mol Biology 397: 1067-1078

Released	2010-03-02
Method	X-RAY DIFFRACTION 3.12 Å
Organisms	Homo sapiens
Macromolecule	Lanosterol 14-alpha demethylase (protein)
Unique Ligands	HEM
Unique branched monosaccharides	GLC

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3LD6 \| pdb_00003ld6	Download File View File

Crystal structure of human lanosterol 14alpha-demethylase (CYP51) in complex with ketoconazole

Strushkevich, N., Tempel, W., MacKenzie, F., Arrowsmith, C.H., Edwards, A.M., Bountra, C., Weigelt, J., Park, H., Structural Genomics Consortium (SGC)

(2010) J Mol Biology 397: 1067-1078

Released	2010-02-02
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Homo sapiens
Macromolecule	Lanosterol 14-alpha demethylase (protein)
Unique Ligands	HEM, KKK
Unique branched monosaccharides	GLC

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3M3R \| pdb_00003m3r	Download File View File

Crystal structure of the M113F alpha-hemolysin mutant complexed with beta-cyclodextrin

Montoya, M., Gouaux, E.

(2010) Proc Natl Acad Sci U S A 107: 8165-8170

Released	2010-05-05
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Staphylococcus aureus
Macromolecule	Alpha-hemolysin (protein)
Unique branched monosaccharides	GLC

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3M4E \| pdb_00003m4e	Download File View File

Crystal structure of the M113N mutant of alpha-hemolysin bound to beta-cyclodextrin

Montoya, M., Gouaux, E.

(2010) Proc Natl Acad Sci U S A 107: 8165-8170

Released	2010-05-05
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Staphylococcus aureus
Macromolecule	Alpha-hemolysin (protein)
Unique branched monosaccharides	GLC

1 to 25 of 43 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1AC0 | pdb_00001ac0

1ACZ | pdb_00001acz

1BFN | pdb_00001bfn

1DMB | pdb_00001dmb

1G1Y | pdb_00001g1y

1GVI | pdb_00001gvi

1JL8 | pdb_00001jl8

1VFO | pdb_00001vfo

1Z0M | pdb_00001z0m

1Z0N | pdb_00001z0n

2V8L | pdb_00002v8l

2Y4S | pdb_00002y4s

2Z1K | pdb_00002z1k

2ZYN | pdb_00002zyn

3C6G | pdb_00003c6g

3CGT | pdb_00003cgt

3CK8 | pdb_00003ck8

3CZH | pdb_00003czh

3DL9 | pdb_00003dl9

3EDJ | pdb_00003edj

3JUS | pdb_00003jus

3JUV | pdb_00003juv

3LD6 | pdb_00003ld6

3M3R | pdb_00003m3r

3M4E | pdb_00003m4e