RCSB PDB: Search

1EPB \| pdb_00001epb	Download File View File

STRUCTURE OF THE EPIDIDYMAL RETINOIC ACID-BINDING PROTEIN AT 2.1 ANGSTROMS RESOLUTION

Newcomer, M.E.

(1993) Structure 1: 7-18

Released	1994-07-31
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Rattus norvegicus
Macromolecule	EPIDIDYMAL RETINOIC ACID-BINDING PROTEIN (protein)
Unique Ligands	9CR

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1FBY \| pdb_00001fby	Download File View File

CRYSTAL STRUCTURE OF THE HUMAN RXR ALPHA LIGAND BINDING DOMAIN BOUND TO 9-CIS RETINOIC ACID

Egea, P.F., Mitschler, A., Rochel, N., Ruff, M., Chambon, P., Moras, D.

(2000) EMBO J 19: 2592-2601

Released	2000-07-28
Method	X-RAY DIFFRACTION 2.25 Å
Organisms	Homo sapiens
Macromolecule	RETINOIC ACID RECEPTOR RXR-ALPHA (protein)
Unique Ligands	9CR

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1FM6 \| pdb_00001fm6	Download File View File

THE 2.1 ANGSTROM RESOLUTION CRYSTAL STRUCTURE OF THE HETERODIMER OF THE HUMAN RXRALPHA AND PPARGAMMA LIGAND BINDING DOMAINS RESPECTIVELY BOUND WITH 9-CIS RETINOIC ACID AND ROSIGLITAZONE AND CO-ACTIVATOR PEPTIDES.

Gampe Jr., R.T., Montana, V.G., Lambert, M.H., Miller, A.B., Bledsoe, R.K., Milburn, M.V., Kliewer, S.A., Willson, T.M., Xu, H.E.

(2000) Mol Cell 5: 545-555

Released	2001-02-16
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens
Macromolecule	PEROXISOME PROLIFERATOR ACTIVATED RECEPTOR GAMMA (protein) RETINOIC ACID RECEPTOR RXR-ALPHA (protein) STEROID RECEPTOR COACTIVATOR (protein)
Unique Ligands	9CR, BRL

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1FM9 \| pdb_00001fm9	Download File View File

THE 2.1 ANGSTROM RESOLUTION CRYSTAL STRUCTURE OF THE HETERODIMER OF THE HUMAN RXRALPHA AND PPARGAMMA LIGAND BINDING DOMAINS RESPECTIVELY BOUND WITH 9-CIS RETINOIC ACID AND GI262570 AND CO-ACTIVATOR PEPTIDES.

Gampe Jr., R.T., Montana, V.G., Lambert, M.H., Miller, A.B., Bledsoe, R.K., Milburn, M.V., Kliewer, S.A., Willson, T.M., Xu, H.E.

(2000) Mol Cell 5: 545-555

Released	2001-02-16
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens
Macromolecule	PEROXISOME PROLIFERATOR ACTIVATED RECEPTOR GAMMA (protein) RETINOIC ACID RECEPTOR RXR-ALPHA (protein) STEROID RECEPTOR COACTIVATOR (protein)
Unique Ligands	570, 9CR

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1K74 \| pdb_00001k74	Download File View File

The 2.3 Angstrom resolution crystal structure of the heterodimer of the human PPARgamma and RXRalpha ligand binding domains respectively bound with GW409544 and 9-cis retinoic acid and co-activator peptides.

Xu, H.E., Lambert, M.H., Montana, V.G., Moore, L.B., Collins, J.L., Oplinger, J.A., Kliewer, S.A., Gampe Jr., R.T., McKee, D.D., Moore, J.T., Willson, T.M.

(2001) Proc Natl Acad Sci U S A 98: 13919-13924

Released	2001-12-05
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Homo sapiens
Macromolecule	Peroxisome proliferator activated receptor gamma (protein) Retinoic acid receptor RXR-alpha (protein) steroid receptor coactivator (protein)
Unique Ligands	544, 9CR

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1TYR \| pdb_00001tyr	Download File View File

TRANSTHYRETIN COMPLEX WITH RETINOIC ACID

Zanotti, G., D'Acunto, M.R., Malpeli, G., Folli, C., Berni, R.

(1995) Eur J Biochem 234: 563-569

Released	1995-09-15
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Homo sapiens
Macromolecule	TRANSTHYRETIN (protein)
Unique Ligands	9CR

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1XDK \| pdb_00001xdk	Download File View File

Crystal Structure of the RARbeta/RXRalpha Ligand Binding Domain Heterodimer in Complex with 9-cis Retinoic Acid and a Fragment of the TRAP220 Coactivator

Pogenberg, V., Guichou, J.F., Vivat-Hannah, V., Kammerer, S., Perez, E., Germain, P., De Lera, A.R., Gronemeyer, H., Royer, C.A., Bourguet, W.

(2005) J Biological Chem 280: 1625-1633

Released	2004-11-09
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Mus musculus
Macromolecule	Retinoic acid receptor RXR-alpha (protein) Retinoic acid receptor, beta (protein) Thyroid Receptor Associated Protein 220 (protein)
Unique Ligands	9CR

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1XIU \| pdb_00001xiu	Download File View File

Crystal structure of the agonist-bound ligand-binding domain of Biomphalaria glabrata RXR

De Groot, A., De Rosny, E., Juillan-Binard, C., Ferrer, J.-L., Laudet, V., Pebay-Peroula, E., Fontecilla-Camps, J.-C., Borel, F.

(2005) J Mol Biology 354: 841-853

Released	2005-09-13
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Biomphalaria glabrata Homo sapiens
Macromolecule	Nuclear receptor coactivator 1 (protein) RXR-like protein (protein)
Unique Ligands	9CR

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1XLS \| pdb_00001xls	Download File View File

Crystal structure of the mouse CAR/RXR LBD heterodimer bound to TCPOBOP and 9cRA and a TIF2 peptide containg the third LXXLL motifs

Suino, K., peng, L., Reynolds, R., Li, Y., Cha, J.-Y., Repa, J.J., Kliewer, S.A., Xu, H.E.

(2004) Mol Cell 16: 893-905

Released	2004-12-28
Method	X-RAY DIFFRACTION 2.96 Å
Organisms	Homo sapiens Mus musculus Rattus norvegicus
Macromolecule	Nuclear receptor coactivator 2 (protein) Orphan nuclear receptor NR1I3 (protein) Retinoic acid receptor RXR-alpha (protein)
Unique Ligands	9CR, TCD

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2NNH \| pdb_00002nnh	Download File View File

CYP2C8dH complexed with 2 molecules of 9-cis retinoic acid

Schoch, G.A., Yano, J.K., Stout, C.D., Johnson, E.F.

(2008) J Biological Chem 283: 17227-17237

Released	2007-10-23
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Homo sapiens
Macromolecule	Cytochrome P450 2C8 (protein)
Unique Ligands	9CR, HEM, PLM, SO4

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3DZU \| pdb_00003dzu	Download File View File

Intact PPAR gamma - RXR alpha Nuclear Receptor Complex on DNA bound with BVT.13, 9-cis Retinoic Acid and NCOA2 Peptide

Chandra, V., Huang, P., Hamuro, Y., Raghuram, S., Wang, Y., Burris, T.P., Rastinejad, F.

(2008) Nature 456: 350-356

Released	2008-10-28
Method	X-RAY DIFFRACTION 3.2 Å
Organisms	Homo sapiens
Macromolecule	NCOA2 Peptide (protein) Peroxisome proliferator-activated receptor gamma (protein) Retinoic acid receptor RXR-alpha (protein) DNA (5'-D(DCPDAPDAPDAPDCPDTPDAPDGPDGPDTPDCPDAPDAPDAPDGPDGPDTPDCPDAPDG)-3') (nucleic acid) DNA (5'-D(DCPDTPDGPDAPDCPDCPDTPDTPDTPDGPDAPDCPDCPDTPDAPDGPDTPDTPDTPDG)-3') (nucleic acid)
Unique Ligands	9CR, PLB, ZN

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3DZY \| pdb_00003dzy	Download File View File

Intact PPAR gamma - RXR alpha Nuclear Receptor Complex on DNA bound with Rosiglitazone, 9-cis Retinoic Acid and NCOA2 Peptide

Chandra, V., Huang, P., Hamuro, Y., Raghuram, S., Wang, Y., Burris, T.P., Rastinejad, F.

(2008) Nature 456: 350-356

Released	2008-10-28
Method	X-RAY DIFFRACTION 3.1 Å
Organisms	Homo sapiens
Macromolecule	NCOA2 Peptide (protein) Peroxisome proliferator-activated receptor gamma (protein) Retinoic acid receptor RXR-alpha (protein) DNA (5'-D(DCPDAPDAPDAPDCPDTPDAPDGPDGPDTPDCPDAPDAPDAPDGPDGPDTPDCPDAPDG)-3') (nucleic acid) DNA (5'-D(DCPDTPDGPDAPDCPDCPDTPDTPDTPDGPDAPDCPDCPDTPDAPDGPDTPDTPDTPDG)-3') (nucleic acid)
Unique Ligands	9CR, BRL, ZN

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3E00 \| pdb_00003e00	Download File View File

Intact PPAR gamma - RXR alpha Nuclear Receptor Complex on DNA bound with GW9662, 9-cis Retinoic Acid and NCOA2 Peptide

Chandra, V., Huang, P., Hamuro, Y., Raghuram, S., Wang, Y., Burris, T.P., Rastinejad, F.

(2008) Nature 456: 350-356

Released	2008-10-28
Method	X-RAY DIFFRACTION 3.1 Å
Organisms	Homo sapiens
Macromolecule	NCOA2 Peptide (protein) Peroxisome proliferator-activated receptor gamma (protein) Retinoic acid receptor RXR-alpha (protein) DNA (5'-D(DCPDAPDAPDAPDCPDTPDAPDGPDGPDTPDCPDAPDAPDAPDGPDGPDTPDCPDAPDG)-3') (nucleic acid) DNA (5'-D(DCPDTPDGPDAPDCPDCPDTPDTPDTPDGPDAPDCPDCPDTPDAPDGPDTPDTPDTPDG)-3') (nucleic acid)
Unique Ligands	9CR, GW9, ZN

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3LBD \| pdb_00003lbd	Download File View File

LIGAND-BINDING DOMAIN OF THE HUMAN RETINOIC ACID RECEPTOR GAMMA BOUND TO 9-CIS RETINOIC ACID

Klaholz, B.P., Renaud, J.-P., Mitschler, A., Moras, D., Structural Proteomics in Europe (SPINE)

(1998) Nat Struct Biol 5: 199-202

Released	1999-03-02
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Homo sapiens
Macromolecule	RETINOIC ACID RECEPTOR GAMMA (protein)
Unique Ligands	9CR

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3OAP \| pdb_00003oap	Download File View File

Crystal structure of human Retinoid X Receptor alpha-ligand binding domain complex with 9-cis retinoic acid and the coactivator peptide GRIP-1

Xia, G., Smith, C.D., Muccio, D.D.

(2011) Biochemistry 50: 93-105

Released	2010-11-17
Method	X-RAY DIFFRACTION 2.05 Å
Organisms	Homo sapiens
Macromolecule	Nuclear receptor coactivator 2 (protein) Retinoic acid receptor RXR-alpha (protein)
Unique Ligands	9CR

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3UVV \| pdb_00003uvv	Download File View File

Crystal Structure of the ligand binding domains of the thyroid receptor:retinoid X receptor complexed with 3,3',5 triiodo-L-thyronine and 9-cis retinoic acid

Fernandez, E.J., Putcha, B.-D.K., Wright, E., Brunzelle, J.S.

(2012) Proc Natl Acad Sci U S A 109: 6084-6087

Released	2012-04-18
Method	X-RAY DIFFRACTION 2.95 Å
Organisms	Gallus gallus Homo sapiens
Macromolecule	Retinoic acid receptor RXR-alpha (protein) Thyroid hormone receptor alpha (protein)
Unique Ligands	9CR, T3

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4NQA \| pdb_00004nqa	Download File View File

Crystal structure of liganded hRXR-alpha/hLXR-beta heterodimer on DNA

Lou, X.H., Toresson, G., Benod, C., Suh, J.H., Phillips, K.J., Webb, P., Gustafsson, J.A.

(2014) Nat Struct Mol Biol 21: 277-281

Released	2014-02-26
Method	X-RAY DIFFRACTION 3.102 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	Liver X nuclear receptor beta (protein) Nuclear receptor coactivator 2 (protein) Retinoic acid receptor RXR-alpha (protein) 5'-D(TPAPAPGPGPTPCPAPCPTPTPCPAPGPGPTPCPA)-3' (nucleic acid) 5'-D(TPAPTPGPAPCPCPTPGPAPAPGPTPGPAPCPCPT)-3' (nucleic acid)
Unique Ligands	965, 9CR, ZN

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5JI0 \| pdb_00005ji0	Download File View File

PPARgamma-RXRalpha(S427F) heterodimer in complex with SRC-1, rosiglitazone, and 9-cis-retanoic acid

Bloudoff, K., Larsen, N.A.

To be published

Released	2017-04-26
Method	X-RAY DIFFRACTION 1.98 Å
Organisms	Homo sapiens
Macromolecule	Nuclear receptor coactivator 1 (protein) Peroxisome proliferator-activated receptor gamma (protein) Retinoic acid receptor RXR-alpha (protein)
Unique Ligands	9CR, BRL

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5M24 \| pdb_00005m24	Download File View File

RARg mutant-S371E

Rochel, N., Sirigu, S.

(2017) PLoS One 12: e0171043-e0171043

Released	2017-09-20
Method	X-RAY DIFFRACTION 1.69 Å
Organisms	Homo sapiens
Macromolecule	Retinoic acid receptor gamma (protein)
Unique Ligands	9CR, CL, LMU

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5UAN \| pdb_00005uan	Download File View File

Crystal structure of multi-domain RAR-beta-RXR-alpha heterodimer on DNA

Chandra, V., Wu, D., Kim, Y., Rastinejad, F.

(2017) Nat Commun 8: 868-868

Released	2017-10-18
Method	X-RAY DIFFRACTION 3.508 Å
Organisms	Homo sapiens
Macromolecule	Nuclear receptor coactivator 2 (protein) Retinoic acid receptor RXR-alpha (protein) Retinoic acid receptor beta (protein) DNA (5'-D(CPTPAPGPGPTPCPAPAPAPGPGPTPCPAPGPC)-3') (nucleic acid) DNA (5'-D(GPCPTPGPAPCPCPTPTPTPGPAPCPCPTPAPG)-3') (nucleic acid)
Unique Ligands	9CR, REA, ZN

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5Z12 \| pdb_00005z12	Download File View File

A structure of FXR/RXR

Lu, Y., Li, Y.

(2018) J Biological Chem 293: 12535-12541

Released	2018-07-04
Method	X-RAY DIFFRACTION 2.75 Å
Organisms	Homo sapiens
Macromolecule	Bile acid receptor (protein) Peptide from Nuclear receptor coactivator 2 (protein) Retinoic acid receptor RXR-alpha (protein)
Unique Ligands	33Y, 9CR

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6A5Y \| pdb_00006a5y	Download File View File

Crystal structure of human FXR/RXR-LBD heterodimer bound to HNC143 and 9cRA and SRC1

Wang, N., Liu, J.

(2018) J Biological Chem 293: 18180-18191

Released	2018-10-10
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens
Macromolecule	Bile acid receptor (protein) Nuclear receptor coactivator 1 (protein) Retinoic acid receptor RXR-alpha (protein)
Unique Ligands	9CR, 9R0, PO4, SO4

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6A5Z \| pdb_00006a5z	Download File View File

Crystal structure of human FXR/RXR-LBD heterodimer bound to HNC180 and 9cRA and SRC1

Wang, N., Liu, J.

(2018) J Biological Chem 293: 18180-18191

Released	2018-10-10
Method	X-RAY DIFFRACTION 2.95 Å
Organisms	Homo sapiens
Macromolecule	Bile acid receptor (protein) Nuclear receptor coactivator 1 (protein) Retinoic acid receptor RXR-alpha (protein)
Unique Ligands	9CR, 9R3

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6A60 \| pdb_00006a60	Download File View File

Crystal structure of human FXR/RXR-LBD heterodimer bound to GW4064 and 9cRA and SRC1

Wang, N., Liu, J.

(2018) J Biological Chem 293: 18180-18191

Released	2018-10-10
Method	X-RAY DIFFRACTION 3.05 Å
Organisms	Homo sapiens
Macromolecule	Bile acid receptor (protein) Nuclear receptor coactivator 1 (protein) Retinoic acid receptor RXR-alpha (protein)
Unique Ligands	064, 9CR

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1EPB | pdb_00001epb

1FBY | pdb_00001fby

1FM6 | pdb_00001fm6

1FM9 | pdb_00001fm9

1K74 | pdb_00001k74

1TYR | pdb_00001tyr

1XDK | pdb_00001xdk

1XIU | pdb_00001xiu

1XLS | pdb_00001xls

2NNH | pdb_00002nnh

3DZU | pdb_00003dzu

3DZY | pdb_00003dzy

3E00 | pdb_00003e00

3LBD | pdb_00003lbd

3OAP | pdb_00003oap

3UVV | pdb_00003uvv

4NQA | pdb_00004nqa

5JI0 | pdb_00005ji0

5M24 | pdb_00005m24

5UAN | pdb_00005uan

5Z12 | pdb_00005z12

6A5Y | pdb_00006a5y

6A5Z | pdb_00006a5z

6A60 | pdb_00006a60