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234,136 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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Search Summary

This query matches 189 Structures.

Refinements

Structure Determination Methodology

experimental (189)

Scientific Name of Source Organism

	synthetic construct (28)
	Escherichia coli (23)
	Escherichia coli K-12 (19)
	Homo sapiens (19)
	Bombyx mori cypovirus 1 (11)
	Mycolicibacterium smegmatis MC2 155 (8)
	Archaeoglobus fulgidus (7)
	Geobacillus kaustophilus HTA426 (7)
	Saccharomyces cerevisiae (7)
	Mycobacterium tuberculosis H37Rv (5)

More...

Taxonomy

	Bacteria (103)
	Eukaryota (43)
	other sequences (28)
	Riboviria (24)
	Archaea (19)
	Varidnaviria (2)
	Duplodnaviria (1)
	unclassified sequences (1)

Experimental Method

	X-RAY DIFFRACTION (168)
	ELECTRON MICROSCOPY (21)

Polymer Entity Type

	Protein (189)
	DNA (36)
	RNA (32)
	NA-hybrid (2)

Refinement Resolution (Å)

	1.0 - 1.5 (4)
	1.5 - 2.0 (48)
	2.0 - 2.5 (41)
	2.5 - 3.0 (59)
	3.0 - 3.5 (21)
	3.5 - 4.0 (7)
	4.0 - 4.5 (5)
	> 4.5 (4)

Release Date

	1990 - 1994 (12)
	1995 - 1999 (1)
	2000 - 2004 (12)
	2005 - 2009 (25)
	2010 - 2014 (30)
	2015 - 2019 (47)
	2020 - 2024 (55)
	2025 - 2029 (7)

Enzyme Classification Name

	Transferases (117)
	Ligases (30)
	Lyases (17)
	Hydrolases (8)
	Oxidoreductases (3)
	Isomerases (1)

Membrane Protein Annotation

	MemProtMD (2)
	PDBTM (2)
	OPM (1)
	mpstruc (1)

Symmetry Type

	Asymmetric (86)
	Cyclic (57)
	Dihedral (42)
	Tetrahedral (12)

SCOP Classification

	Alpha and beta proteins (a/b) (53)
	Alpha and beta proteins (a+b) (38)
	Small proteins (23)
	Artifacts (11)
	All alpha proteins (12)
	Multi-domain proteins (alpha and beta) (12)
	All beta proteins (2)

AllSelected

1 to 25 of 189 Structures

Page 1 of 8

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Explore in 3D

1COZ \| pdb_00001coz	Download File View File

CTP:GLYCEROL-3-PHOSPHATE CYTIDYLYLTRANSFERASE FROM BACILLUS SUBTILIS

Weber, C.H., Park, Y.S., Sanker, S., Kent, C., Ludwig, M.L.

(1999) Structure 7: 1113-1124

Released	1999-10-06
Method	X-RAY DIFFRACTION 2 Å
Organisms	Bacillus subtilis
Macromolecule	PROTEIN (GLYCEROL-3-PHOSPHATE CYTIDYLYLTRANSFERASE) (protein)
Unique Ligands	CTP

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1GQ9 \| pdb_00001gq9	Download File View File

THE STRUCTURE OF CMP:2-KETO-3-DEOXY-MANNO-OCTONIC ACID SYNTHETASE COMPLEXED WITH CTP at 100K

Jelakovic, S., Schulz, G.E.

(2002) Biochemistry 41: 1174

Released	2002-02-11
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Escherichia coli
Macromolecule	3-DEOXY-MANNO-OCTULOSONATE CYTIDYLYLTRANSFERASE (protein)
Unique Ligands	CTP, MG

Explore in 3D

1H7G \| pdb_00001h7g	Download File View File

The structure of CMP:2-keto-3-deoxy-manno-octonic acid synthetase and of its complexes with substrates and substrate analogues, CTP MG2+ complex

Jelakovic, S., Schulz, G.E.

(2001) J Mol Biology 312: 143

Released	2001-09-13
Method	X-RAY DIFFRACTION 2.13 Å
Organisms	Escherichia coli
Macromolecule	3-DEOXY-MANNO-OCTULOSONATE CYTIDYLYLTRANSFERASE (protein)
Unique Ligands	CTP, MG

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1I52 \| pdb_00001i52	Download File View File

CRYSTAL STRUCTURE OF 4-DIPHOSPHOCYTIDYL-2-C-METHYLERYTHRITOL (CDP-ME) SYNTHASE (YGBP) INVOLVED IN MEVALONATE INDEPENDENT ISOPRENOID BIOSYNTHESIS

Richard, S.B., Bowman, M.E., Kwiatkowski, W., Kang, I., Chow, C., Lillo, M., Cane, D.E., Noel, J.P.

(2001) Nat Struct Biol 8: 641-648

Released	2001-07-11
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Escherichia coli K-12
Macromolecule	4-DIPHOSPHOCYTIDYL-2-C-METHYLERYTHRITOL SYNTHASE (protein)
Unique Ligands	CA, CTP, MG

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1KFD \| pdb_00001kfd	Download File View File

CRYSTAL STRUCTURES OF THE KLENOW FRAGMENT OF DNA POLYMERASE I COMPLEXED WITH DEOXYNUCLEOSIDE TRIPHOSPHATE AND PYROPHOSPHATE

Beese, L.S., Friedman, J.M., Steitz, T.A.

(1993) Biochemistry 32: 14095-14101

Released	1994-06-22
Method	X-RAY DIFFRACTION 3.9 Å
Organisms	Escherichia coli
Macromolecule	DNA POLYMERASE I KLENOW FRAGMENT (protein)
Unique Ligands	CTP

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1MIY \| pdb_00001miy	Download File View File

Crystal structure of Bacillus stearothermophilus CCA-adding enzyme in complex with CTP

Li, F., Xiong, Y., Wang, J., Cho, H.D., Weiner, A.M., Steitz, T.A.

(2002) Cell 111: 815-824

Released	2002-12-13
Method	X-RAY DIFFRACTION 3.52 Å
Organisms	Geobacillus stearothermophilus
Macromolecule	tRNA CCA-adding enzyme (protein)
Unique Ligands	CTP, MG

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1R89 \| pdb_00001r89	Download File View File

Crystal Structures of an Archaeal Class I CCA-Adding Enzyme and Its Nucleotide Complexes

Xiong, Y., Li, F., Wang, J., Weiner, A.M., Steitz, T.A.

(2003) Mol Cell 12: 1165-1172

Released	2003-12-16
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Archaeoglobus fulgidus
Macromolecule	tRNA nucleotidyltransferase (protein)
Unique Ligands	CL, CTP, MG, MN, NA

Explore in 3D

1RAA \| pdb_00001raa	Download File View File

CRYSTAL STRUCTURE OF CTP-LIGATED T STATE ASPARTATE TRANSCARBAMOYLASE AT 2.5 ANGSTROMS RESOLUTION: IMPLICATIONS FOR ATCASE MUTANTS AND THE MECHANISM OF NEGATIVE COOPERATIVITY

Kosman, R.P., Gouaux, J.E., Lipscomb, W.N.

(1993) Proteins 15: 147-176

Released	1994-01-31
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Escherichia coli K-12
Macromolecule	Aspartate carbamoyltransferase catalytic chain (protein) Aspartate carbamoyltransferase regulatory chain (protein)
Unique Ligands	CTP, ZN

Explore in 3D

1RAB \| pdb_00001rab	Download File View File

CRYSTAL STRUCTURE OF CTP-LIGATED T STATE ASPARTATE TRANSCARBAMOYLASE AT 2.5 ANGSTROMS RESOLUTION: IMPLICATIONS FOR ATCASE MUTANTS AND THE MECHANISM OF NEGATIVE COOPERATIVITY

Kosman, R.P., Gouaux, J.E., Lipscomb, W.N.

(1993) Proteins 15: 147-176

Released	1994-01-31
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Escherichia coli K-12
Macromolecule	Aspartate carbamoyltransferase catalytic chain (protein) Aspartate carbamoyltransferase regulatory chain (protein)
Unique Ligands	CTP, ZN

Explore in 3D

1RAC \| pdb_00001rac	Download File View File

CRYSTAL STRUCTURE OF CTP-LIGATED T STATE ASPARTATE TRANSCARBAMOYLASE AT 2.5 ANGSTROMS RESOLUTION: IMPLICATIONS FOR ATCASE MUTANTS AND THE MECHANISM OF NEGATIVE COOPERATIVITY

Kosman, R.P., Gouaux, J.E., Lipscomb, W.N.

(1993) Proteins 15: 147-176

Released	1994-01-31
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Escherichia coli K-12
Macromolecule	Aspartate carbamoyltransferase catalytic chain (protein) Aspartate carbamoyltransferase regulatory chain (protein)
Unique Ligands	CTP, ZN

Explore in 3D

1RAD \| pdb_00001rad	Download File View File

CRYSTAL STRUCTURE OF CTP-LIGATED T STATE ASPARTATE TRANSCARBAMOYLASE AT 2.5 ANGSTROMS RESOLUTION: IMPLICATIONS FOR ATCASE MUTANTS AND THE MECHANISM OF NEGATIVE COOPERATIVITY

Kosman, R.P., Gouaux, J.E., Lipscomb, W.N.

(1993) Proteins 15: 147-176

Released	1994-01-31
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Escherichia coli K-12
Macromolecule	Aspartate carbamoyltransferase catalytic chain (protein) Aspartate carbamoyltransferase regulatory chain (protein)
Unique Ligands	CTP, ZN

Explore in 3D

1RAE \| pdb_00001rae	Download File View File

CRYSTAL STRUCTURE OF CTP-LIGATED T STATE ASPARTATE TRANSCARBAMOYLASE AT 2.5 ANGSTROMS RESOLUTION: IMPLICATIONS FOR ATCASE MUTANTS AND THE MECHANISM OF NEGATIVE COOPERATIVITY

Kosman, R.P., Gouaux, J.E., Lipscomb, W.N.

(1993) Proteins 15: 147-176

Released	1994-01-31
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Escherichia coli K-12
Macromolecule	Aspartate carbamoyltransferase catalytic chain (protein) Aspartate carbamoyltransferase regulatory chain (protein)
Unique Ligands	CTP, ZN

Explore in 3D

1RAF \| pdb_00001raf	Download File View File

CRYSTAL STRUCTURE OF CTP-LIGATED T STATE ASPARTATE TRANSCARBAMOYLASE AT 2.5 ANGSTROMS RESOLUTION: IMPLICATIONS FOR ATCASE MUTANTS AND THE MECHANISM OF NEGATIVE COOPERATIVITY

Kosman, R.P., Gouaux, J.E., Lipscomb, W.N.

(1993) Proteins 15: 147-176

Released	1994-01-31
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Escherichia coli K-12
Macromolecule	Aspartate carbamoyltransferase catalytic chain (protein) Aspartate carbamoyltransferase regulatory chain (protein)
Unique Ligands	CTP, ZN

Explore in 3D

1RAG \| pdb_00001rag	Download File View File

CRYSTAL STRUCTURE OF CTP-LIGATED T STATE ASPARTATE TRANSCARBAMOYLASE AT 2.5 ANGSTROMS RESOLUTION: IMPLICATIONS FOR ATCASE MUTANTS AND THE MECHANISM OF NEGATIVE COOPERATIVITY

Kosman, R.P., Gouaux, J.E., Lipscomb, W.N.

(1993) Proteins 15: 147-176

Released	1994-01-31
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Escherichia coli K-12
Macromolecule	Aspartate carbamoyltransferase catalytic chain (protein) Aspartate carbamoyltransferase regulatory chain (protein)
Unique Ligands	CTP, ZN

Explore in 3D

1RAH \| pdb_00001rah	Download File View File

CRYSTAL STRUCTURE OF CTP-LIGATED T STATE ASPARTATE TRANSCARBAMOYLASE AT 2.5 ANGSTROMS RESOLUTION: IMPLICATIONS FOR ATCASE MUTANTS AND THE MECHANISM OF NEGATIVE COOPERATIVITY

Kosman, R.P., Gouaux, J.E., Lipscomb, W.N.

(1993) Proteins 15: 147-176

Released	1994-01-31
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Escherichia coli K-12
Macromolecule	Aspartate carbamoyltransferase catalytic chain (protein) Aspartate carbamoyltransferase regulatory chain (protein)
Unique Ligands	CTP, ZN

Explore in 3D

1RAI \| pdb_00001rai	Download File View File

CRYSTAL STRUCTURE OF CTP-LIGATED T STATE ASPARTATE TRANSCARBAMOYLASE AT 2.5 ANGSTROMS RESOLUTION: IMPLICATIONS FOR ATCASE MUTANTS AND THE MECHANISM OF NEGATIVE COOPERATIVITY

Kosman, R.P., Gouaux, J.E., Lipscomb, W.N.

(1993) Proteins 15: 147-176

Released	1994-01-31
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Escherichia coli K-12
Macromolecule	Aspartate carbamoyltransferase catalytic chain (protein) Aspartate carbamoyltransferase regulatory chain (protein)
Unique Ligands	CTP, ZN

Explore in 3D

1TFY \| pdb_00001tfy	Download File View File

How CCA is added to the 3' end of immature tRNA without the use of an oligonucleotide template

Xiong, Y., Steitz, T.A.

(2004) Nature 430: 640-645

Released	2004-08-10
Method	X-RAY DIFFRACTION 3.2 Å
Organisms	Archaeoglobus fulgidus
Macromolecule	tRNA nucleotidyltransferase (protein) 5'-R(CPGPCPGPGPAPUPC)-3' (nucleic acid) 5'-R(CPGPGPAPUPCPCPGPCPAPC)-3' (nucleic acid) 5'-R(GPCPGPGPAPUPAPUPCPCPGPCPAPC)-3' (nucleic acid) 5'-R(GPCPGPGPAPUPAPUPCPCPGPCPG)-3' (nucleic acid)
Unique Ligands	CTP, MG

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1TUG \| pdb_00001tug	Download File View File

Aspartate Transcarbamoylase Catalytic Chain Mutant E50A Complex with Phosphonoacetamide, Malonate, and Cytidine-5-Prime-Triphosphate (CTP)

Stieglitz, K., Stec, B., Baker, D.P., Kantrowitz, E.R.

(2004) J Mol Biology 341: 853-868

Released	2004-07-20
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Escherichia coli
Macromolecule	Aspartate carbamoyltransferase catalytic chain (protein) Aspartate carbamoyltransferase regulatory chain (protein)
Unique Ligands	CTP, MLI, PCT, ZN

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1TWG \| pdb_00001twg	Download File View File

RNA polymerase II complexed with CTP

Westover, K.D., Bushnell, D.A., Kornberg, R.D.

(2004) Cell 119: 481-489

Released	2004-11-16
Method	X-RAY DIFFRACTION 3.3 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	Unique protein chains: 10
Unique Ligands	CTP, MN, ZN

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1U7W \| pdb_00001u7w	Download File View File

Phosphopantothenoylcysteine synthetase from E. coli, CTP-complex

Stanitzek, S., Augustin, M.A., Huber, R., Kupke, T., Steinbacher, S.

(2004) Structure 12: 1977-1988

Released	2004-11-30
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Escherichia coli
Macromolecule	Coenzyme A biosynthesis bifunctional protein coaBC (protein)
Unique Ligands	CA, CTP

Explore in 3D

1UDW \| pdb_00001udw	Download File View File

Crystal structure of human uridine-cytidine kinase 2 complexed with a feedback-inhibitor, CTP

Suzuki, N.N., Koizumi, K., Fukushima, M., Matsuda, A., Inagaki, F.

(2004) Structure 12: 751-764

Released	2004-05-04
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Homo sapiens
Macromolecule	Uridine-cytidine kinase 2 (protein)
Unique Ligands	CTP

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1UEU \| pdb_00001ueu	Download File View File

Divergent evolutions of trinucleotide polymerization revealed by an archaeal CCA-adding enzyme structure

Nureki, O., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

(2003) EMBO J 22: 5918-5927

Released	2003-12-02
Method	X-RAY DIFFRACTION 2 Å
Organisms	Archaeoglobus fulgidus
Macromolecule	tRNA nucleotidyltransferase (protein)
Unique Ligands	ACT, CTP, MG

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1VPA \| pdb_00001vpa	Download File View File

Crystal structure of 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase (TM1393) from Thermotoga maritima at 2.67 A resolution

Joint Center for Structural Genomics (JCSG)

To be published

Released	2004-11-02
Method	X-RAY DIFFRACTION 2.67 Å
Organisms	Thermotoga maritima
Macromolecule	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase (protein)
Unique Ligands	ACY, CTP, MG

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1WVC \| pdb_00001wvc	Download File View File

alpha-D-glucose-1-phosphate cytidylyltransferase complexed with CTP

Koropatkin, N.M., Cleland, W.W., Holden, H.M.

(2005) J Biological Chem 280: 10774-10780

Released	2005-01-11
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Salmonella enterica subsp. enterica serovar Typhi str. CT18
Macromolecule	Glucose-1-phosphate cytidylyltransferase (protein)
Unique Ligands	CTP, MG, NI

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1XTU \| pdb_00001xtu	Download File View File

Sulfolobus solfataricus uracil phosphoribosyltransferase in complex with uridine 5'-monophosphate (UMP) and cytidine 5'-triphosphate (CTP)

Arent, S., Harris, P., Jensen, K.F., Larsen, S.

(2005) Biochemistry 44: 883-892

Released	2005-02-08
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Saccharolobus solfataricus
Macromolecule	Probable uracil phosphoribosyltransferase (protein)
Unique Ligands	CTP, U5P

1 to 25 of 189 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1COZ | pdb_00001coz

1GQ9 | pdb_00001gq9

1H7G | pdb_00001h7g

1I52 | pdb_00001i52

1KFD | pdb_00001kfd

1MIY | pdb_00001miy

1R89 | pdb_00001r89

1RAA | pdb_00001raa

1RAB | pdb_00001rab

1RAC | pdb_00001rac

1RAD | pdb_00001rad

1RAE | pdb_00001rae

1RAF | pdb_00001raf

1RAG | pdb_00001rag

1RAH | pdb_00001rah

1RAI | pdb_00001rai

1TFY | pdb_00001tfy

1TUG | pdb_00001tug

1TWG | pdb_00001twg

1U7W | pdb_00001u7w

1UDW | pdb_00001udw

1UEU | pdb_00001ueu

1VPA | pdb_00001vpa

1WVC | pdb_00001wvc

1XTU | pdb_00001xtu