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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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Search Summary

This query matches 783 Structures.

Refinements

Structure Determination Methodology

experimental (783)

Scientific Name of Source Organism

	Homo sapiens (226)
	Escherichia coli (34)
	Mus musculus (34)
	synthetic construct (28)
	Bos taurus (17)
	Escherichia coli K-12 (17)
	Bacillus thermoproteolyticus (13)
	Mycobacterium tuberculosis H37Rv (13)
	Human immunodeficiency virus 1 (10)
	Pseudomonas aeruginosa (10)

More...

Taxonomy

	Eukaryota (400)
	Bacteria (303)
	Riboviria (45)
	other sequences (28)
	Archaea (26)
	Monodnaviria (8)
	Duplodnaviria (5)
	Eukaryota (eukaryotes) (3)
	Riboviria (RNA viruses and viroids) (3)
	Varidnaviria (1)

More...

Experimental Method

	X-RAY DIFFRACTION (778)
	NEUTRON DIFFRACTION (2)
	ELECTRON CRYSTALLOGRAPHY (1)
	ELECTRON MICROSCOPY (1)
	SOLUTION NMR (1)

Polymer Entity Type

	Protein (778)
	RNA (20)
	DNA (10)
	NA-hybrid (1)

Refinement Resolution (Å)

	0.5 - 1.0 (10)
	1.0 - 1.5 (111)
	1.5 - 2.0 (313)
	2.0 - 2.5 (254)
	2.5 - 3.0 (85)
	3.0 - 3.5 (9)

Release Date

	1990 - 1994 (4)
	1995 - 1999 (12)
	2000 - 2004 (72)
	2005 - 2009 (114)
	2010 - 2014 (193)
	2015 - 2019 (221)
	2020 - 2024 (162)
	2025 - 2029 (5)

Enzyme Classification Name

	Hydrolases (158)
	Transferases (117)
	Isomerases (77)
	Oxidoreductases (50)
	Lyases (46)
	Ligases (11)

Membrane Protein Annotation

	OPM (8)
	mpstruc (2)

Symmetry Type

	Asymmetric (430)
	Cyclic (326)
	Dihedral (62)
	Octahedral (2)
	Helical (1)

SCOP Classification

	Alpha and beta proteins (a+b) (193)
	All beta proteins (103)
	Alpha and beta proteins (a/b) (150)
	Artifacts (69)
	All alpha proteins (66)
	Multi-domain proteins (alpha and beta) (15)
	Designed proteins (5)
	Small proteins (4)
	Coiled coil proteins (1)

AllSelected

1 to 25 of 783 Structures

Page 1 of 32

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1AK9 \| pdb_00001ak9	Download File View File

SUBTILISIN MUTANT 8321

Whitlow, M., Howard, A.J., Wood, J.F.

(1989) Biochemistry 28: 7205-7213

Released	1997-11-12
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Bacillus amyloliquefaciens
Macromolecule	SUBTILISIN 8321 (protein)
Unique Ligands	CA, IPA, NA

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1AM7 \| pdb_00001am7	Download File View File

Lysozyme from bacteriophage lambda

Evrard, C., Fastrez, J., Declercq, J.P.

(1998) J Mol Biology 276: 151-164

Released	1997-12-24
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Lambdavirus lambda
Macromolecule	LYSOZYME (protein)
Unique Ligands	IPA

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1AQN \| pdb_00001aqn	Download File View File

SUBTILISIN MUTANT 8324

Whitlow, M., Howard, A.J., Wood, J.F.

To be published

Released	1998-01-14
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Bacillus amyloliquefaciens
Macromolecule	SUBTILISIN 8324 (protein)
Unique Ligands	CA, IPA, UNX

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1ASW \| pdb_00001asw	Download File View File

AVIAN SARCOMA VIRUS INTEGRASE CATALYTIC CORE DOMAIN CRYSTALLIZED FROM 20% PEG 4000, 10% ISOPROPANOL, HEPES PH 7.5 USING SELENOMETHIONINE SUBSTITUTED PROTEIN; DATA COLLECTED AT-165 DEGREES C

Bujacz, G., Jaskolski, M., Alexandratos, J., Wlodawer, A.

(1995) J Mol Biology 253: 333-346

Released	1995-11-14
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Avian sarcoma virus
Macromolecule	AVIAN SARCOMA VIRUS INTEGRASE (protein)
Unique Ligands	EPE, IPA

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1AU9 \| pdb_00001au9	Download File View File

SUBTILISIN BPN' MUTANT 8324 IN CITRATE

Whitlow, M., Howard, A.J., Wood, J.F.

(1989) Biochemistry 28: 7205-7213

Released	1997-12-31
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Bacillus amyloliquefaciens
Macromolecule	SUBTILISIN BPN' (protein)
Unique Ligands	CA, IPA, UNX

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1BND \| pdb_00001bnd	Download File View File

STRUCTURE OF THE BRAIN-DERIVED NEUROTROPHIC FACTOR(SLASH)NEUROTROPHIN 3 HETERODIMER

Robinson, R.C., Radziejewski, C., Stuart, D.I., Jones, E.Y.

(1995) Biochemistry 34: 4139-4146

Released	1996-04-04
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Homo sapiens
Macromolecule	BRAIN DERIVED NEUROTROPHIC FACTOR (protein) NEUROTROPHIN 3 (protein)
Unique Ligands	IPA

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1BW9 \| pdb_00001bw9	Download File View File

PHENYLALANINE DEHYDROGENASE STRUCTURE IN TERNARY COMPLEX WITH NAD+ AND PHENYLPYRUVATE

Vanhooke, J.L., Thoden, J.B., Brunhuber, N.M.W., Blanchard, J.L., Holden, H.M.

(1999) Biochemistry 38: 2326-2339

Released	1999-05-18
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Rhodococcus sp. (in: high G+C Gram-positive bacteria)
Macromolecule	PHENYLALANINE DEHYDROGENASE (protein)
Unique Ligands	EDO, IPA, K, NA, NAD, PO4, PPY

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1C1D \| pdb_00001c1d	Download File View File

L-PHENYLALANINE DEHYDROGENASE STRUCTURE IN TERNARY COMPLEX WITH NADH AND L-PHENYLALANINE

Vanhooke, J.L., Thoden, J.B.

(2000) Biochemistry 39: 9174-9187

Released	2000-08-30
Method	X-RAY DIFFRACTION 1.25 Å
Organisms	Rhodococcus sp. (in: high G+C Gram-positive bacteria)
Macromolecule	L-PHENYLALANINE DEHYDROGENASE (protein)
Unique Ligands	IPA, K, NA, NAI, PHE, PO4

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1C1X \| pdb_00001c1x	Download File View File

L-PHENYLALANINE DEHYDROGENASE STRUCTURE IN TERNARY COMPLEX WITH NAD+ AND L-3-PHENYLLACTATE

Vanhooke, J.L., Thoden, J.B.

(2000) Biochemistry 39: 9174-9187

Released	2000-08-30
Method	X-RAY DIFFRACTION 1.4 Å
Organisms	Rhodococcus sp. (in: high G+C Gram-positive bacteria)
Macromolecule	L-PHENYLALANINE DEHYDROGENASE (protein) PROTEIN (L-PHENYLALANINE DEHYDROGENASE) (protein)
Unique Ligands	HFA, IPA, K, NA, NAD, PO4

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1CI8 \| pdb_00001ci8	Download File View File

ESTERASE ESTB FROM BURKHOLDERIA GLADIOLI: AN ESTERASE WITH (BETA)-LACTAMASE FOLD.

Wagner, U.G., Petersen, E.I., Schwab, H., Kratky, C.

(2002) Protein Sci 11: 467-478

Released	2001-12-12
Method	X-RAY DIFFRACTION 2 Å
Organisms	Burkholderia gladioli
Macromolecule	PROTEIN (CARBOXYLESTERASE) (protein)
Unique Ligands	IPA

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1CYD \| pdb_00001cyd	Download File View File

CARBONYL REDUCTASE COMPLEXED WITH NADPH AND 2-PROPANOL

Tanaka, N., Nonaka, T., Mitsui, Y.

(1996) Structure 4: 33-45

Released	1996-10-14
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Mus musculus
Macromolecule	CARBONYL REDUCTASE (protein)
Unique Ligands	IPA, NDP

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1DQN \| pdb_00001dqn	Download File View File

CRYSTAL STRUCTURE OF GIARDIA GUANINE PHOSPHORIBOSYLTRANSFERASE COMPLEXED WITH A TRANSITION STATE ANALOGUE

Shi, W., Munagala, N.R., Wang, C.C., Li, C.M., Tyler, P.C., Furneaux, R.H., Grubmeyer, C., Schramm, V.L., Almo, S.C.

(2000) Biochemistry 39: 6781-6790

Released	2000-07-26
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Giardia intestinalis
Macromolecule	GUANINE PHOSPHORIBOSYLTRANSFERASE (protein)
Unique Ligands	IMU, IPA, MG, POP

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1DQP \| pdb_00001dqp	Download File View File

CRYSTAL STRUCTURE OF GIARDIA GUANINE PHOSPHORIBOSYLTRANSFERASE COMPLEXED WITH IMMUCILLING

Shi, W., Munagala, N.R., Wang, C.C., Li, C.M., Tyler, P.C., Furneaux, R.H., Grubmeyer, C., Schramm, V.L., Almo, S.C.

(2000) Biochemistry 39: 6781-6790

Released	2000-07-26
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Giardia intestinalis
Macromolecule	GUANINE PHOSPHORIBOSYLTRANSFERASE (protein)
Unique Ligands	IMG, IPA

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1DY5 \| pdb_00001dy5	Download File View File

Deamidated derivative of bovine pancreatic ribonuclease

Esposito, L., Vitagliano, L., Sica, F., Zagari, A., Mazzarella, L.

(2000) J Mol Biology 297: 713

Released	2000-03-28
Method	X-RAY DIFFRACTION 0.87 Å
Organisms	Bos taurus
Macromolecule	RIBONUCLEASE A (protein)
Unique Ligands	ACT, IPA, SO4

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1EC7 \| pdb_00001ec7	Download File View File

E. COLI GLUCARATE DEHYDRATASE NATIVE ENZYME

Gulick, A.M., Hubbard, B.K., Gerlt, J.A., Rayment, I.

(2000) Biochemistry 39: 4590-4602

Released	2000-05-23
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Escherichia coli
Macromolecule	GLUCARATE DEHYDRATASE (protein)
Unique Ligands	IPA, MG

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1EC8 \| pdb_00001ec8	Download File View File

E. COLI GLUCARATE DEHYDRATASE BOUND TO PRODUCT 2,3-DIHYDROXY-5-OXO-HEXANEDIOATE

Gulick, A.M., Hubbard, B.K., Gerlt, J.A., Rayment, I.

(2000) Biochemistry 39: 4590-4602

Released	2000-05-23
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Escherichia coli
Macromolecule	GLUCARATE DEHYDRATASE (protein)
Unique Ligands	GLR, IPA, MG

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1EC9 \| pdb_00001ec9	Download File View File

E. COLI GLUCARATE DEHYDRATASE BOUND TO XYLAROHYDROXAMATE

Gulick, A.M., Hubbard, B.K., Gerlt, J.A., Rayment, I.

(2000) Biochemistry 39: 4590-4602

Released	2000-05-23
Method	X-RAY DIFFRACTION 2 Å
Organisms	Escherichia coli
Macromolecule	GLUCARATE DEHYDRATASE (protein)
Unique Ligands	IPA, MG, XYH

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1ECQ \| pdb_00001ecq	Download File View File

E. COLI GLUCARATE DEHYDRATASE BOUND TO 4-DEOXYGLUCARATE

Gulick, A.M., Hubbard, B.K., Gerlt, J.A., Rayment, I.

(2000) Biochemistry 39: 4590-4602

Released	2000-05-23
Method	X-RAY DIFFRACTION 2 Å
Organisms	Escherichia coli
Macromolecule	GLUCARATE DEHYDRATASE (protein)
Unique Ligands	DXG, IPA, MG

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1ECW \| pdb_00001ecw	Download File View File

CRYSTAL STRUCTURE OF SIMIAN IMMUNODEFICIENCY VIRUS MATRIX ANTIGEN (SIV MA) AT 293K.

Rao, Z., Belyaev, A., Fry, E., Roy, P., Jones, I.M., Stuart, D.I.

(1995) Nature 378: 743-747

Released	2000-02-16
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Simian immunodeficiency virus
Macromolecule	GAG POLYPROTEIN (protein)
Unique Ligands	IPA

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1ED1 \| pdb_00001ed1	Download File View File

CRYSTAL STRUCTURE OF SIMIAN IMMUNODEFICIENCY VIRUS MATRIX ANTIGEN (SIV MA) AT 100K.

Rao, Z., Belyaev, A., Fry, E., Roy, P., Jones, I.M., Stuart, D.I.

(1995) Nature 378: 743-747

Released	2000-02-16
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Simian immunodeficiency virus - mac
Macromolecule	GAG POLYPROTEIN (protein)
Unique Ligands	IPA

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1EEU \| pdb_00001eeu	Download File View File

M4L/Y(27D)D/Q89D/T94H mutant of LEN

Pokkuluri, P.R., Cai, X., Gu, M., Stevens, F.J., Schiffer, M.

(2002) Protein Sci 11: 1687-1694

Released	2001-02-03
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Homo sapiens
Macromolecule	KAPPA-4 IMMUNOGLOBULIN (LIGHT CHAIN) (protein)
Unique Ligands	IPA

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1F5F \| pdb_00001f5f	Download File View File

CRYSTAL STRUCTURE OF THE N-TERMINAL G-DOMAIN OF SHBG IN COMPLEX WITH ZINC

Avvakumov, V.A., Muller, Y.A., Hammond, G.L.

(2000) J Biological Chem 275: 25920-25925

Released	2000-09-06
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Homo sapiens
Macromolecule	SEX HORMONE-BINDING GLOBULIN (protein)
Unique Ligands	CA, DHT, IPA, ZN

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1FB1 \| pdb_00001fb1	Download File View File

CRYSTAL STRUCTURE OF HUMAN GTP CYCLOHYDROLASE I

Auerbach, G., Herrmann, A., Bracher, A., Bader, G., Gutlich, M., Fischer, M., Neukamm, M., Nar, H., Garrido-Franco, M., Richardson, J., Huber, R., Bacher, A.

(2000) Proc Natl Acad Sci U S A 97: 13567-13572

Released	2000-12-08
Method	X-RAY DIFFRACTION 3.1 Å
Organisms	Homo sapiens
Macromolecule	GTP CYCLOHYDROLASE I (protein)
Unique Ligands	IPA, ZN

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1G9M \| pdb_00001g9m	Download File View File

HIV-1 HXBC2 GP120 ENVELOPE GLYCOPROTEIN COMPLEXED WITH CD4 AND INDUCED NEUTRALIZING ANTIBODY 17B

Kwong, P.D., Wyatt, R., Majeed, S., Robinson, J., Sweet, R.W., Sodroski, J., Hendrickson, W.A.

(2000) Structure 8: 1329-1339

Released	2000-12-27
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Homo sapiens Human immunodeficiency virus 1
Macromolecule	ANTIBODY 17B, HEAVY CHAIN (protein) ANTIBODY 17B, LIGHT CHAIN (protein) ENVELOPE GLYCOPROTEIN GP120 (protein) T-CELL SURFACE GLYCOPROTEIN CD4 (protein)
Unique Ligands	IPA, NAG
Unique branched monosaccharides	FUC, NAG

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1GHA \| pdb_00001gha	Download File View File

A SECOND ACTIVE SITE IN CHYMOTRYPSIN? THE X-RAY CRYSTAL STRUCTURE OF N-ACETYL-D-TRYPTOPHAN BOUND TO GAMMA-CHYMOTRYPSIN

Yennawar, H.P., Yennawar, N.H., Farber, G.K.

(1995) J Am Chem Soc 117: 577-585

Released	1994-06-22
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Bos taurus
Macromolecule	GAMMA-CHYMOTRYPSIN A (protein) PRO GLY VAL TYR PEPTIDE (protein)
Unique Ligands	IPA, SO4

1 to 25 of 783 Structures

Page 1 of 32

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1AK9 | pdb_00001ak9

1AM7 | pdb_00001am7

1AQN | pdb_00001aqn

1ASW | pdb_00001asw

1AU9 | pdb_00001au9

1BND | pdb_00001bnd

1BW9 | pdb_00001bw9

1C1D | pdb_00001c1d

1C1X | pdb_00001c1x

1CI8 | pdb_00001ci8

1CYD | pdb_00001cyd

1DQN | pdb_00001dqn

1DQP | pdb_00001dqp

1DY5 | pdb_00001dy5

1EC7 | pdb_00001ec7

1EC8 | pdb_00001ec8

1EC9 | pdb_00001ec9

1ECQ | pdb_00001ecq

1ECW | pdb_00001ecw

1ED1 | pdb_00001ed1

1EEU | pdb_00001eeu

1F5F | pdb_00001f5f

1FB1 | pdb_00001fb1

1G9M | pdb_00001g9m

1GHA | pdb_00001gha